pojos

Class ImageData

java.lang.Object

pojos.DataObject

pojos.ImageData

public class ImageData
extends DataObject

The data that makes up an OME Image along with links to its Pixels, enclosing Datasets, and the Experimenter that owns this Image.

Since:

OME2.2

Version:

2.2 (Internal version: $Revision$ $Date: 2005/05/09 19:50:41 $)

Author:

Jean-Marie Burel j.burel@dundee.ac.uk,
Andrea Falconi a.falconi@dundee.ac.uk

Field Summary

Fields

Modifier and Type	Field and Description
static String	ANNOTATIONS Identifies the Image#ANNOTATIONLINKS field.
static String	DATASET_LINKS Identifies the Image#DATASETLINKS field.
static String	DESCRIPTION Identifies the Image#DESCRIPTION field.
static String	NAME Identifies the Image#NAME field.
static String	PIXELS Identifies the Image#PIXELS field.

Constructor Summary

Constructors

Constructor and Description
ImageData() Creates a new instance.
ImageData(omero.model.Image image) Creates a new instance.

Method Summary

Methods

Modifier and Type	Method and Description
Timestamp	getAcquisitionDate() Returns the acquisition date.
List<PixelsData>	getAllPixels() Returns all the sets of pixels related to this image.
Set	getAnnotations() Returns the annotations
Map<Long,Long>	getAnnotationsCounts() Returns the number of annotations linked to the object, key: id of the user, value: number of annotation.
Set	getDatasets() Returns the datasets containing this image.
PixelsData	getDefaultPixels() Returns the default set of pixels.
String	getDescription() Returns the description of the image.
long	getFilesetId() Returns the ID of the fileset to which this image belongs.
String	getFormat() Returns the format of the image.
int	getIndex() Returns the index of the image within the multi-images file.
Timestamp	getInserted() Returns the insertion time of the image.
long	getInstrumentId() Returns the id of the instrument if any.
String	getName() Returns the name of the image.
String	getParentFilePath() Returns the path to the file hosting the image.
String	getPathToFile() Returns the path to the file.
omero.model.OriginalFile	getReference() Returns the reference to the file to register.
int	getSeries() Returns the series.
boolean	isArchived() Returns true if the image has been archived, false otherwise.
boolean	isFSImage() Returns true is the image has been imported the new import strategy known as FS import, false if imported using the previous import approach (data duplication).
boolean	isLifetime() Returns true if the image is a lifetime image, false otherwise.
void	setAllPixels(List<PixelsData> newValue) Sets the set of pixels related to this image.
void	setAnnotations(Set newValue) Sets the image's annotations.
void	setDatasets(Set newValue) Sets the datasets containing the image.
void	setDefaultPixels(PixelsData defaultPixels) Sets the default set of pixels.
void	setDescription(String description) Sets the description of the image.
void	setName(String name) Sets the name of the image.
void	setParentFilePath(String path, int index) Sets the path to the file hosting the image.
void	setPathToFile(String path) Sets the path to the file.
void	setReference(omero.model.OriginalFile reference) Sets the reference to the file to register.
void	setRegisteredFile(omero.model.Image object) Sets the registered file.

Methods inherited from class pojos.DataObject

asAnnotation, asChannel, asDataset, asExperimenter, asGroup, asIAnnotated, asImage, asIObject, asPixels, asPlate, asPojo, asPojos, asPojos, asProject, asScreen, asWell, asWellSample, canAnnotate, canDelete, canEdit, canLink, getCreated, getDetails, getGroupId, getId, getOwner, getPermissions, getUpdated, getVersion, isDirty, isLoaded, nullDetails, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, setDirty, setId, setValue, setVersion, timeOfEvent, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

NAME

public static final String NAME

Identifies the Image#NAME field.

See Also:

Constant Field Values

DESCRIPTION

public static final String DESCRIPTION

Identifies the Image#DESCRIPTION field.

See Also:

Constant Field Values

PIXELS

public static final String PIXELS

Identifies the Image#PIXELS field.

See Also:

Constant Field Values

ANNOTATIONS

public static final String ANNOTATIONS

Identifies the Image#ANNOTATIONLINKS field.

See Also:

Constant Field Values

DATASET_LINKS

public static final String DATASET_LINKS

Identifies the Image#DATASETLINKS field.

See Also:

Constant Field Values

Constructor Detail

ImageData

public ImageData()

Creates a new instance.

ImageData

public ImageData(omero.model.Image image)

Creates a new instance.

Parameters:

image - Back pointer to the Image model object. Mustn't be null.

Throws:

IllegalArgumentException - If the object is null.

Method Detail

setPathToFile

public void setPathToFile(String path)

Sets the path to the file.

Parameters:

path - The value to set.

setReference

public void setReference(omero.model.OriginalFile reference)

Sets the reference to the file to register.

Parameters:

reference - The value to set.

getReference

public omero.model.OriginalFile getReference()

Returns the reference to the file to register.

Returns:

See above.

getPathToFile

public String getPathToFile()

Returns the path to the file.

Returns:

See above.

setParentFilePath

public void setParentFilePath(String path,
                     int index)

Sets the path to the file hosting the image. This should only be used to handle multi-images file e.g. some Leica files. Sets the index of the image within that file.

Parameters:

path - The path to set.

index - The index to set.

getParentFilePath

public String getParentFilePath()

Returns the path to the file hosting the image. This should only be used to handle multi-images file e.g. some Leica files.

Returns:

See above.

getIndex

public int getIndex()

Returns the index of the image within the multi-images file.

Returns:

See above.

getSeries

public int getSeries()

Returns the series.

Returns:

See above.

getFormat

public String getFormat()

Returns the format of the image.

Returns:

See above.

setRegisteredFile

public void setRegisteredFile(omero.model.Image object)

Sets the registered file.

Parameters:

object - The object to store.

setName

public void setName(String name)

Sets the name of the image.

Parameters:

name - The name of the image. Mustn't be null.

Throws:

IllegalArgumentException - If the name is null.

getName

public String getName()

Returns the name of the image.

Returns:

See above.

setDescription

public void setDescription(String description)

Sets the description of the image.

Parameters:

description - The description of the image.

getDescription

public String getDescription()

Returns the description of the image.

Returns:

See above.

isArchived

public boolean isArchived()

Returns true if the image has been archived, false otherwise.

Returns:

See above.

getAnnotationsCounts

public Map<Long,Long> getAnnotationsCounts()

Returns the number of annotations linked to the object, key: id of the user, value: number of annotation. The map may be null if no annotation.

Returns:

See above.

getInserted

public Timestamp getInserted()

Returns the insertion time of the image.

Returns:

See above.

getAcquisitionDate

public Timestamp getAcquisitionDate()

Returns the acquisition date.

Returns:

See above.

getDefaultPixels

public PixelsData getDefaultPixels()

Returns the default set of pixels.

Returns:

See above.

setDefaultPixels

public void setDefaultPixels(PixelsData defaultPixels)

Sets the default set of pixels.

Parameters:

defaultPixels - The default set of pixels.

getAllPixels

public List<PixelsData> getAllPixels()

Returns all the sets of pixels related to this image.

Returns:

See above.

setAllPixels

public void setAllPixels(List<PixelsData> newValue)

Sets the set of pixels related to this image.

Parameters:

newValue - The set of pixels' set.

getDatasets

public Set getDatasets()

Returns the datasets containing this image.

Returns:

See above.

setDatasets

public void setDatasets(Set newValue)

Sets the datasets containing the image.

Parameters:

newValue - The set of datasets.

getAnnotations

public Set getAnnotations()

Returns the annotations

Returns:

See above.

setAnnotations

public void setAnnotations(Set newValue)

Sets the image's annotations.

Parameters:

newValue - The set of annotations.

isLifetime

public boolean isLifetime()

Returns true if the image is a lifetime image, false otherwise.

Returns:

See above.

getInstrumentId

public long getInstrumentId()

Returns the id of the instrument if any.

Returns:

See above.

isFSImage

public boolean isFSImage()

Returns true is the image has been imported the new import strategy known as FS import, false if imported using the previous import approach (data duplication).

Returns:

See above.

getFilesetId

public long getFilesetId()

Returns the ID of the fileset to which this image belongs. Similar to isFSImage(), for images imported pre-FS (data duplication) -1 will be returned. Else - the long value of the fileset ID.

Returns:

See above.