Uses of Interface
ome.util.SqlAction

Packages that use SqlAction

Package	Description
ome.formats
ome.logic	The central repository of implementations which will be accessible through this server.
ome.security.auth
ome.security.basic	Basic OMERO security contextual classes Basic classes that provide security context objects necessary to secure the implementation of the OMERO server on a JBoss platform.
ome.services	Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component.
ome.services.blitz.impl
ome.services.blitz.repo
ome.services.chgrp
ome.services.chown
ome.services.db
ome.services.delete	Implementations of the ome.api.IDelete service.
ome.services.eventlogs
ome.services.export	Helpers for implementing the necessary interfaces from Bio-Formats for mapping OMERO objects (ome.model.*) to OME-XML and OME-TIFF
ome.services.fulltext	All necessary classes for background indexing of metadata and attached binary files.
ome.services.graphs	Server classes for handling complicated graphs of model objects.
ome.services.pixeldata
ome.services.query	facilitates the creation of Hibernate Queries and Criteria.
ome.services.roi
ome.services.scripts
ome.services.sharing	ome.api.IShare support infrastructure.
ome.services.util	Helper classes to support OMERO service beans Instead of abstract classes, IOC methods and dependency injection is used to provide service interception for the Service (binary) bean classes.
ome.tools	OMERO Server Utility and Spring/Hibernate Tools Classes/Interfaces that implement File, Hibernate, Spring, Annotation, Hierarchy, etc. method mechanics for the OMERO server Related Documentation For more information, please see: TODO
ome.tools.hibernate	Hibernate specific tools for the OMERO Server Classes/Interfaces that implement Hibernate method mechanics for the OMERO server Related Documentation For more information, please see: TODO
ome.util	Utilities for all of OMERO.
ome.util.actions
omero.cmd

Uses of SqlAction in ome.formats

Constructors in ome.formats with parameters of type SqlAction

Constructor and Description
OMEROMetadataStore(ServiceFactory factory, SqlAction sql) Creates a new instance.

Uses of SqlAction in ome.logic

Fields in ome.logic declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	AdminImpl.sql

Methods in ome.logic with parameters of type SqlAction

Modifier and Type	Method and Description
void	ConfigImpl.setSqlAction(SqlAction sql) SqlAction setter for dependency injection.
void	RepositoryInfoImpl.setSqlAction(SqlAction sql) Bean injection setter for SQL operations

Constructors in ome.logic with parameters of type SqlAction

Constructor and Description
AdminImpl(SqlAction sql, SessionFactory osf, org.springframework.mail.MailSender mailSender, org.springframework.mail.SimpleMailMessage templateMessage, ACLVoter aclVoter, PasswordProvider passwordProvider, RoleProvider roleProvider, LdapImpl ldapUtil, PasswordUtil passwordUtil, ChmodStrategy chmod, ChecksumProviderFactory cpf)
LdapImpl(org.springframework.ldap.core.ContextSource ctx, org.springframework.ldap.core.LdapOperations ldap, Roles roles, LdapConfig config, RoleProvider roleProvider, SqlAction sql)

Uses of SqlAction in ome.security.auth

Constructors in ome.security.auth with parameters of type SqlAction

Constructor and Description
PasswordUtil(SqlAction sql)
PasswordUtil(SqlAction sql, boolean passwordRequired)
PasswordUtil(SqlAction sql, boolean passwordRequired, Charset encoding)
PasswordUtil(SqlAction sql, Charset encoding)
PasswordUtil(SqlAction sql, Roles roles, boolean passwordRequired)
PasswordUtil(SqlAction sql, Roles roles, boolean passwordRequired, Charset encoding)

Uses of SqlAction in ome.security.basic

Fields in ome.security.basic declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	EventHandler.sql

Constructors in ome.security.basic with parameters of type SqlAction

Constructor and Description
AllGroupsSecurityFilter(SqlAction sql) default constructor which calls all the necessary setters for this FactoryBean.
AllGroupsSecurityFilter(SqlAction sql, Roles roles)
EventHandler(SqlAction sql, BasicSecuritySystem securitySystem, SessionFactory factory, org.springframework.transaction.interceptor.TransactionAttributeSource txSource) only public constructor, used for dependency injection.
EventHandler(SqlAction sql, BasicSecuritySystem securitySystem, SessionFactory factory, org.springframework.transaction.interceptor.TransactionAttributeSource txSource, boolean readOnly)
GroupChmodStrategy(BasicACLVoter voter, SessionFactory osf, SqlAction sql, ExtendedMetadata em)

Uses of SqlAction in ome.services

Fields in ome.services declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	OmeroFilePathResolver.sql SQL action instance for this class.

Methods in ome.services with parameters of type SqlAction

Modifier and Type	Method and Description
void	RawPixelsBean.setSqlAction(SqlAction sql) SQL action Bean injector

Constructors in ome.services with parameters of type SqlAction

Constructor and Description
OmeroFilePathResolver(SqlAction sql, String omeroDataDir) Constructor.

Uses of SqlAction in ome.services.blitz.impl

Fields in ome.services.blitz.impl declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	MetadataStoreI.sql
protected SqlAction	RoiI.sql

Constructors in ome.services.blitz.impl with parameters of type SqlAction

Constructor and Description
MetadataStoreI(BlitzExecutor be, PopulateRoiJob popRoi, SqlAction sql, OriginalFilesService filesService, String omeroDataDir)
RoiI(BlitzExecutor be, GeomTool geomTool, SqlAction sql)

Uses of SqlAction in ome.services.blitz.repo

Methods in ome.services.blitz.repo with parameters of type SqlAction

Modifier and Type	Method and Description
protected void	RepositoryDaoImpl.canWriteParentDirectory(ServiceFactory sf, SqlAction sql, String repoUuid, CheckedPath parent) Throw a SecurityViolation if the current context cannot write to the parent directory.
void	RepositoryDao.createOrFixUserDir(String uuid, List<CheckedPath> path, org.hibernate.Session s, ServiceFactory sf, SqlAction sql) Checks that the given CheckedPath objects exist (via RepositoryDao.findRepoFile(String, CheckedPath, String, Ice.Current)) and are in the "user" group.
void	RepositoryDaoImpl.createOrFixUserDir(String repoUuid, List<CheckedPath> checkedPaths, org.hibernate.Session s, ServiceFactory sf, SqlAction sql)
protected List<OriginalFile>	RepositoryDaoImpl.createOriginalFile(ServiceFactory sf, SqlAction sql, String repoUuid, List<CheckedPath> checked, omero.model.ChecksumAlgorithm checksumAlgorithm, String mimetype) Primary location for creating original files from a CheckedPath instance.
OriginalFile	RepositoryDao.findRepoFile(ServiceFactory sf, SqlAction sql, String uuid, CheckedPath checked, String mimetype) As RepositoryDao.findRepoFile(String, CheckedPath, String, Current) but can be called from within a transaction.
OriginalFile	RepositoryDaoImpl.findRepoFile(ServiceFactory sf, SqlAction sql, String uuid, CheckedPath checked, String mimetype)
protected List<OriginalFile>	RepositoryDaoImpl.getOriginalFiles(ServiceFactory sf, SqlAction sql, String repoUuid, CheckedPath checked)
protected void	ManagedRepositoryI.makeCheckedDirs(LinkedList<CheckedPath> paths, boolean parents, org.hibernate.Session s, ServiceFactory sf, SqlAction sql, EventContext effectiveEventContext) Checks for the top-level user directory restriction before calling PublicRepositoryI#makeCheckedDirs(LinkedList, boolean, Current)
protected void	PublicRepositoryI.makeCheckedDirs(LinkedList<CheckedPath> paths, boolean parents, org.hibernate.Session s, ServiceFactory sf, SqlAction sql, EventContext effectiveEventContext) Internal method to be used by subclasses to perform any extra checks on the listed of CheckedPath instances before allowing the creation of directories.
void	PublicRepositoryI.makeDir(CheckedPath checked, boolean parents, org.hibernate.Session s, ServiceFactory sf, SqlAction sql, EventContext effectiveEventContext)
OriginalFile	RepositoryDao.register(String repoUuid, CheckedPath checked, String mimetype, ServiceFactory sf, SqlAction sql) Like {@link #register(String, CheckedPath, String, Ice.Current) but does not create a new transaction.
OriginalFile	RepositoryDaoImpl.register(String repoUuid, CheckedPath checked, String mimetype, ServiceFactory sf, SqlAction sql) Returned original file object is "live" within the Hibernate session.

Uses of SqlAction in ome.services.chgrp

Methods in ome.services.chgrp with parameters of type SqlAction

Modifier and Type	Method and Description
void	ChgrpStep.action(GraphStep.Callback cb, org.hibernate.Session session, SqlAction sql, GraphOpts opts) Deprecated.
void	ChgrpStep.validate(GraphState graphState, org.hibernate.Session session, SqlAction sql, GraphOpts opts) Deprecated.

Uses of SqlAction in ome.services.chown

Methods in ome.services.chown with parameters of type SqlAction

Modifier and Type	Method and Description
void	ChownStep.action(GraphStep.Callback cb, org.hibernate.Session session, SqlAction sql, GraphOpts opts) Deprecated.

Uses of SqlAction in ome.services.db

Constructors in ome.services.db with parameters of type SqlAction

Constructor and Description
DatabaseIdentity(String authority, SqlAction sql)

Uses of SqlAction in ome.services.delete

Methods in ome.services.delete with parameters of type SqlAction

Modifier and Type	Method and Description
void	DeleteStep.action(GraphStep.Callback cb, org.hibernate.Session session, SqlAction sql, GraphOpts opts) Deprecated.
int	Deletion.start(EventContext ec, SqlAction sql, org.hibernate.Session session, String type, long id, Map<String,String> options) Deprecated. Returns the number of steps that are available.

Uses of SqlAction in ome.services.eventlogs

Fields in ome.services.eventlogs declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	PersistentEventLogLoader.sql

Methods in ome.services.eventlogs with parameters of type SqlAction

Modifier and Type	Method and Description
void	PersistentEventLogLoader.setSqlAction(SqlAction sql)

Uses of SqlAction in ome.services.export

Methods in ome.services.export with parameters of type SqlAction

Modifier and Type	Method and Description
void	ExporterStep.action(GraphStep.Callback cb, org.hibernate.Session session, SqlAction sql, GraphOpts opts) Deprecated.

Uses of SqlAction in ome.services.fulltext

Methods in ome.services.fulltext with parameters of type SqlAction

Modifier and Type	Method and Description
void	FullTextIndexer.setSqlAction(SqlAction sql) Since these instances are used repeatedly, we need to check for already set SqlAction

Uses of SqlAction in ome.services.graphs

Methods in ome.services.graphs with parameters of type SqlAction

Modifier and Type	Method and Description
abstract void	GraphStep.action(GraphStep.Callback cb, org.hibernate.Session session, SqlAction sql, GraphOpts opts) Deprecated. Primary action which should perform the main modifications required by the step.
ExperimenterGroup	BaseGraphSpec.groupInfo(SqlAction sql) Deprecated.
ExperimenterGroup	GraphSpec.groupInfo(SqlAction sql) Deprecated. Like GraphSpec.load(Session) uses the current table and id information to look up information on the given target.
void	GraphStep.validate(GraphState graphState, org.hibernate.Session session, SqlAction sql, GraphOpts opts) Deprecated. Action performed at the end of the transaction to give all rows the chance to invalidate other actions.

Constructors in ome.services.graphs with parameters of type SqlAction

Constructor and Description
GraphState(EventContext ec, GraphStepFactory factory, SqlAction sql, org.hibernate.Session session, GraphSpec spec) Deprecated.

Uses of SqlAction in ome.services.pixeldata

Methods in ome.services.pixeldata with parameters of type SqlAction

Modifier and Type	Method and Description
void	PixelDataHandler.setSqlAction(SqlAction sql) Since these instances are used repeatedly, we need to check for already set SqlAction

Uses of SqlAction in ome.services.query

Constructors in ome.services.query with parameters of type SqlAction

Constructor and Description
StringQuery(SqlAction sql, Parameters parameters)
StringQuerySource(SqlAction sql)

Uses of SqlAction in ome.services.roi

Fields in ome.services.roi declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	GeomTool.sql

Constructors in ome.services.roi with parameters of type SqlAction

Constructor and Description
GeomTool(PixelData data, SqlAction sql, SessionFactory factory)
GeomTool(PixelData data, SqlAction sql, SessionFactory factory, Executor ex, String uuid)

Uses of SqlAction in ome.services.scripts

Methods in ome.services.scripts with parameters of type SqlAction

Modifier and Type	Method and Description
protected OriginalFile	ScriptRepoHelper.addOrReplace(org.hibernate.Session session, SqlAction sqlAction, ServiceFactory sf, RepoFile repoFile, Long old)
int	ScriptRepoHelper.countInDb(SqlAction sql)
Long	ScriptRepoHelper.findInDb(SqlAction sql, RepoFile repoFile, boolean scriptsOnly) Looks to see if a path is contained in the repository.
List<Long>	ScriptRepoHelper.idsInDb(SqlAction sql)
boolean	ScriptRepoHelper.isInRepo(SqlAction sql, long id)
OriginalFile	ScriptRepoHelper.load(long id, org.hibernate.Session s, SqlAction sqlAction, boolean check)
long	ScriptRepoHelper.removeMissingFilesFromDb(SqlAction sqlAction, org.hibernate.Session session, List<OriginalFile> filesOnDisk) Given the current files on disk, #unregister(Long, Session) all files which have been removed from disk.
protected void	ScriptRepoHelper.unregister(Long old, SqlAction sqlAction) Unregisters a given file from the script repository by setting its Repo uuid to null.

Uses of SqlAction in ome.services.sharing

Fields in ome.services.sharing declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	BlobShareStore.sqlAction

Methods in ome.services.sharing with parameters of type SqlAction

Modifier and Type	Method and Description
void	BlobShareStore.setSqlAction(SqlAction sqlAction)

Uses of SqlAction in ome.services.util

Fields in ome.services.util declared as SqlAction

Modifier and Type	Field and Description
protected SqlAction	Executor.Impl.sqlAction

Methods in ome.services.util that return SqlAction

Modifier and Type	Method and Description
SqlAction	Executor.SimpleWork.getSqlAction()

Methods in ome.services.util with parameters of type SqlAction

Modifier and Type	Method and Description
Object	Executor.SqlWork.doWork(SqlAction sql)
void	Executor.SimpleWork.setSqlAction(SqlAction sql)

Constructors in ome.services.util with parameters of type SqlAction

Constructor and Description
DBPatchCheck(SqlAction sql, PreferenceContext prefs)
DBUserCheck(SqlAction sql, PreferenceContext prefs)
Executor.Impl(CurrentDetails principalHolder, SessionFactory factory, SqlAction sqlAction, String[] proxyNames)
Executor.Impl(CurrentDetails principalHolder, SessionFactory factory, SqlAction sqlAction, String[] proxyNames, ExecutorService service)

Uses of SqlAction in ome.tools

Constructors in ome.tools with parameters of type SqlAction

Constructor and Description
RepositoryTask(SqlAction sql) Constructor

Uses of SqlAction in ome.tools.hibernate

Constructors in ome.tools.hibernate with parameters of type SqlAction

Constructor and Description
SessionFactory(org.hibernate.SessionFactory factory, SqlAction isolatedSqlAction)

Uses of SqlAction in ome.util

Classes in ome.util that implement SqlAction

Modifier and Type	Class and Description
static class	SqlAction.Impl Base implementation which can be used

Methods in ome.util with parameters of type SqlAction

Modifier and Type	Method and Description
void	TableIdGenerator.setSqlAction(SqlAction sql)

Uses of SqlAction in ome.util.actions

Classes in ome.util.actions that implement SqlAction

Modifier and Type	Class and Description
class	PostgresSqlAction

Uses of SqlAction in omero.cmd

Methods in omero.cmd that return SqlAction

Modifier and Type	Method and Description
SqlAction	Helper.getSql()

Methods in omero.cmd with parameters of type SqlAction

Modifier and Type	Method and Description
List<Object>	HandleI.steps(SqlAction sql, org.hibernate.Session session, ServiceFactory sf)

Constructors in omero.cmd with parameters of type SqlAction

Constructor and Description
Helper(omero.cmd.Request request, omero.cmd.Status status, SqlAction sql, org.hibernate.Session session, ServiceFactory sf)