OmeroMetadata (OMERO (OME Remote Objects) Server)

java.lang.Object
- ome.xml.meta.DummyMetadata
- - loci.formats.meta.DummyMetadata
  - - ome.services.blitz.impl.OmeroMetadata

All Implemented Interfaces:

ome.xml.meta.BaseMetadata, ome.xml.meta.IMetadata, ome.xml.meta.MetadataRetrieve, ome.xml.meta.MetadataStore
```
public class OmeroMetadata
extends loci.formats.meta.DummyMetadata
```
An implementation for MetadataStore and MetadataRetrieve that knows how to read and write the OMERO object model.

Author:

Josh Moore josh at glencoesoftware.com, Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

Constructor Summary

Constructors
Constructor and Description

OmeroMetadata(DatabaseIdentity db)

Constructors
Constructor and Description
`OmeroMetadata(DatabaseIdentity db)`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`addImage(omero.model.Image image)`
`int`	`getBooleanAnnotationCount()`
`String`	`getBooleanAnnotationDescription(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationID(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationNamespace(int booleanAnnotationIndex)`
`Boolean`	`getBooleanAnnotationValue(int booleanAnnotationIndex)`
`ome.xml.model.enums.AcquisitionMode`	`getChannelAcquisitionMode(int imageIndex, int channelIndex)`
`ome.xml.model.primitives.Color`	`getChannelColor(int imageIndex, int channelIndex)`
`ome.xml.model.enums.ContrastMethod`	`getChannelContrastMethod(int imageIndex, int channelIndex)`
`int`	`getChannelCount(int imageIndex)`
`ome.units.quantity.Length`	`getChannelEmissionWavelength(int imageIndex, int channelIndex)`
`ome.units.quantity.Length`	`getChannelExcitationWavelength(int imageIndex, int channelIndex)`
`String`	`getChannelFluor(int imageIndex, int channelIndex)`
`String`	`getChannelID(int imageIndex, int channelIndex)`
`ome.xml.model.enums.IlluminationType`	`getChannelIlluminationType(int imageIndex, int channelIndex)`
`String`	`getChannelName(int imageIndex, int channelIndex)`
`Double`	`getChannelNDFilter(int imageIndex, int channelIndex)`
`ome.units.quantity.Length`	`getChannelPinholeSize(int imageIndex, int channelIndex)`
`Integer`	`getChannelPockelCellSetting(int imageIndex, int channelIndex)`
`ome.xml.model.primitives.PositiveInteger`	`getChannelSamplesPerPixel(int imageIndex, int channelIndex)`
`int`	`getCommentAnnotationCount()`
`String`	`getCommentAnnotationDescription(int commentAnnotationIndex)`
`String`	`getCommentAnnotationID(int commentAnnotationIndex)`
`String`	`getCommentAnnotationNamespace(int commentAnnotationIndex)`
`String`	`getCommentAnnotationValue(int commentAnnotationIndex)`
`int`	`getDoubleAnnotationCount()`
`String`	`getDoubleAnnotationDescription(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationID(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationNamespace(int doubleAnnotationIndex)`
`Double`	`getDoubleAnnotationValue(int doubleAnnotationIndex)`
`omero.model.Image`	`getImage(int i)`
`ome.xml.model.primitives.Timestamp`	`getImageAcquisitionDate(int imageIndex)`
`String`	`getImageAnnotationRef(int imageIndex, int annotationRefIndex)`
`int`	`getImageAnnotationRefCount(int imageIndex)`
`int`	`getImageCount()`
`String`	`getImageDescription(int imageIndex)`
`String`	`getImageID(int imageIndex)`
`String`	`getImageName(int imageIndex)`
`int`	`getLongAnnotationCount()`
`String`	`getLongAnnotationDescription(int longAnnotationIndex)`
`String`	`getLongAnnotationID(int longAnnotationIndex)`
`String`	`getLongAnnotationNamespace(int longAnnotationIndex)`
`Long`	`getLongAnnotationValue(int longAnnotationIndex)`
`Boolean`	`getPixelsBinDataBigEndian(int imageIndex, int binDataIndex)`
`ome.xml.model.enums.DimensionOrder`	`getPixelsDimensionOrder(int imageIndex)`
`String`	`getPixelsID(int imageIndex)`
`ome.units.quantity.Length`	`getPixelsPhysicalSizeX(int imageIndex)`
`ome.units.quantity.Length`	`getPixelsPhysicalSizeY(int imageIndex)`
`ome.units.quantity.Length`	`getPixelsPhysicalSizeZ(int imageIndex)`
`ome.xml.model.primitives.PositiveInteger`	`getPixelsSizeC(int imageIndex)`
`ome.xml.model.primitives.PositiveInteger`	`getPixelsSizeT(int imageIndex)`
`ome.xml.model.primitives.PositiveInteger`	`getPixelsSizeX(int imageIndex)`
`ome.xml.model.primitives.PositiveInteger`	`getPixelsSizeY(int imageIndex)`
`ome.xml.model.primitives.PositiveInteger`	`getPixelsSizeZ(int imageIndex)`
`ome.units.quantity.Time`	`getPixelsTimeIncrement(int imageIndex)`
`ome.xml.model.enums.PixelType`	`getPixelsType(int imageIndex)`
`int`	`getPlaneCount(int imageIndex)`
`ome.units.quantity.Time`	`getPlaneDeltaT(int imageIndex, int planeIndex)`
`ome.units.quantity.Time`	`getPlaneExposureTime(int imageIndex, int planeIndex)`
`ome.units.quantity.Length`	`getPlanePositionX(int imageIndex, int planeIndex)`
`ome.units.quantity.Length`	`getPlanePositionY(int imageIndex, int planeIndex)`
`ome.units.quantity.Length`	`getPlanePositionZ(int imageIndex, int planeIndex)`
`ome.xml.model.primitives.NonNegativeInteger`	`getPlaneTheC(int imageIndex, int planeIndex)`
`ome.xml.model.primitives.NonNegativeInteger`	`getPlaneTheT(int imageIndex, int planeIndex)`
`ome.xml.model.primitives.NonNegativeInteger`	`getPlaneTheZ(int imageIndex, int planeIndex)`
`ome.xml.meta.MetadataRoot`	`getRoot()`
`int`	`getTagAnnotationCount()`
`String`	`getTagAnnotationDescription(int tagAnnotationIndex)`
`String`	`getTagAnnotationID(int tagAnnotationIndex)`
`String`	`getTagAnnotationNamespace(int tagAnnotationIndex)`
`String`	`getTagAnnotationValue(int tagAnnotationIndex)`
`int`	`getTermAnnotationCount()`
`String`	`getTermAnnotationDescription(int termAnnotationIndex)`
`String`	`getTermAnnotationID(int termAnnotationIndex)`
`String`	`getTermAnnotationNamespace(int termAnnotationIndex)`
`String`	`getTermAnnotationValue(int termAnnotationIndex)`
`int`	`getTimestampAnnotationCount()`
`String`	`getTimestampAnnotationDescription(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationID(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationNamespace(int timestampAnnotationIndex)`
`ome.xml.model.primitives.Timestamp`	`getTimestampAnnotationValue(int timestampAnnotationIndex)`
`int`	`getXMLAnnotationCount()`
`String`	`getXMLAnnotationDescription(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationID(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationNamespace(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationValue(int XMLAnnotationIndex)`
`String`	`handleLsid(omero.model.IObject obj)`
`void`	`initialize(org.hibernate.Session session)`
`int`	`sizeImages()`

Methods inherited from class ome.xml.meta.DummyMetadata
createRoot, getArcAnnotationRef, getArcID, getArcLotNumber, getArcManufacturer, getArcModel, getArcPower, getArcSerialNumber, getArcType, getBinaryFileFileName, getBinaryFileMIMEType, getBinaryFileSize, getBinaryOnlyMetadataFile, getBinaryOnlyUUID, getBooleanAnnotationAnnotationCount, getBooleanAnnotationAnnotationRef, getBooleanAnnotationAnnotator, getChannelAnnotationRef, getChannelAnnotationRefCount, getChannelFilterSetRef, getChannelLightSourceSettingsAttenuation, getChannelLightSourceSettingsID, getChannelLightSourceSettingsWavelength, getCommentAnnotationAnnotationCount, getCommentAnnotationAnnotationRef, getCommentAnnotationAnnotator, getDatasetAnnotationRef, getDatasetAnnotationRefCount, getDatasetCount, getDatasetDescription, getDatasetExperimenterGroupRef, getDatasetExperimenterRef, getDatasetID, getDatasetImageRef, getDatasetImageRefCount, getDatasetName, getDatasetRefCount, getDetectorAmplificationGain, getDetectorAnnotationRef, getDetectorAnnotationRefCount, getDetectorCount, getDetectorGain, getDetectorID, getDetectorLotNumber, getDetectorManufacturer, getDetectorModel, getDetectorOffset, getDetectorSerialNumber, getDetectorSettingsBinning, getDetectorSettingsGain, getDetectorSettingsID, getDetectorSettingsIntegration, getDetectorSettingsOffset, getDetectorSettingsReadOutRate, getDetectorSettingsVoltage, getDetectorSettingsZoom, getDetectorType, getDetectorVoltage, getDetectorZoom, getDichroicAnnotationRef, getDichroicAnnotationRefCount, getDichroicCount, getDichroicID, getDichroicLotNumber, getDichroicManufacturer, getDichroicModel, getDichroicSerialNumber, getDoubleAnnotationAnnotationCount, getDoubleAnnotationAnnotationRef, getDoubleAnnotationAnnotator, getEllipseAnnotationRef, getEllipseFillColor, getEllipseFillRule, getEllipseFontFamily, getEllipseFontSize, getEllipseFontStyle, getEllipseID, getEllipseLineCap, getEllipseLocked, getEllipseRadiusX, getEllipseRadiusY, getEllipseStrokeColor, getEllipseStrokeDashArray, getEllipseStrokeWidth, getEllipseText, getEllipseTheC, getEllipseTheT, getEllipseTheZ, getEllipseTransform, getEllipseVisible, getEllipseX, getEllipseY, getExperimentCount, getExperimentDescription, getExperimenterAnnotationRef, getExperimenterAnnotationRefCount, getExperimenterCount, getExperimenterEmail, getExperimenterFirstName, getExperimenterGroupAnnotationRef, getExperimenterGroupAnnotationRefCount, getExperimenterGroupCount, getExperimenterGroupDescription, getExperimenterGroupExperimenterRef, getExperimenterGroupExperimenterRefCount, getExperimenterGroupID, getExperimenterGroupLeader, getExperimenterGroupName, getExperimenterID, getExperimenterInstitution, getExperimenterLastName, getExperimenterMiddleName, getExperimenterUserName, getExperimentExperimenterRef, getExperimentID, getExperimentType, getFilamentAnnotationRef, getFilamentID, getFilamentLotNumber, getFilamentManufacturer, getFilamentModel, getFilamentPower, getFilamentSerialNumber, getFilamentType, getFileAnnotationAnnotationCount, getFileAnnotationAnnotationRef, getFileAnnotationAnnotator, getFileAnnotationCount, getFileAnnotationDescription, getFileAnnotationID, getFileAnnotationNamespace, getFilterAnnotationRef, getFilterAnnotationRefCount, getFilterCount, getFilterFilterWheel, getFilterID, getFilterLotNumber, getFilterManufacturer, getFilterModel, getFilterSerialNumber, getFilterSetCount, getFilterSetDichroicRef, getFilterSetEmissionFilterRef, getFilterSetEmissionFilterRefCount, getFilterSetExcitationFilterRef, getFilterSetExcitationFilterRefCount, getFilterSetID, getFilterSetLotNumber, getFilterSetManufacturer, getFilterSetModel, getFilterSetSerialNumber, getFilterType, getGenericExcitationSourceAnnotationRef, getGenericExcitationSourceID, getGenericExcitationSourceLotNumber, getGenericExcitationSourceManufacturer, getGenericExcitationSourceMap, getGenericExcitationSourceModel, getGenericExcitationSourcePower, getGenericExcitationSourceSerialNumber, getImageExperimenterGroupRef, getImageExperimenterRef, getImageExperimentRef, getImageInstrumentRef, getImageMicrobeamManipulationRef, getImageROIRef, getImageROIRefCount, getImagingEnvironmentAirPressure, getImagingEnvironmentCO2Percent, getImagingEnvironmentHumidity, getImagingEnvironmentMap, getImagingEnvironmentTemperature, getInstrumentAnnotationRef, getInstrumentAnnotationRefCount, getInstrumentCount, getInstrumentID, getLabelAnnotationRef, getLabelFillColor, getLabelFillRule, getLabelFontFamily, getLabelFontSize, getLabelFontStyle, getLabelID, getLabelLineCap, getLabelLocked, getLabelStrokeColor, getLabelStrokeDashArray, getLabelStrokeWidth, getLabelText, getLabelTheC, getLabelTheT, getLabelTheZ, getLabelTransform, getLabelVisible, getLabelX, getLabelY, getLaserAnnotationRef, getLaserFrequencyMultiplication, getLaserID, getLaserLaserMedium, getLaserLotNumber, getLaserManufacturer, getLaserModel, getLaserPockelCell, getLaserPower, getLaserPulse, getLaserPump, getLaserRepetitionRate, getLaserSerialNumber, getLaserTuneable, getLaserType, getLaserWavelength, getLeaderCount, getLightEmittingDiodeAnnotationRef, getLightEmittingDiodeID, getLightEmittingDiodeLotNumber, getLightEmittingDiodeManufacturer, getLightEmittingDiodeModel, getLightEmittingDiodePower, getLightEmittingDiodeSerialNumber, getLightPathAnnotationRef, getLightPathAnnotationRefCount, getLightPathDichroicRef, getLightPathEmissionFilterRef, getLightPathEmissionFilterRefCount, getLightPathExcitationFilterRef, getLightPathExcitationFilterRefCount, getLightSourceAnnotationRefCount, getLightSourceCount, getLightSourceType, getLineAnnotationRef, getLineFillColor, getLineFillRule, getLineFontFamily, getLineFontSize, getLineFontStyle, getLineID, getLineLineCap, getLineLocked, getLineMarkerEnd, getLineMarkerStart, getLineStrokeColor, getLineStrokeDashArray, getLineStrokeWidth, getLineText, getLineTheC, getLineTheT, getLineTheZ, getLineTransform, getLineVisible, getLineX1, getLineX2, getLineY1, getLineY2, getListAnnotationAnnotationCount, getListAnnotationAnnotationRef, getListAnnotationAnnotator, getListAnnotationCount, getListAnnotationDescription, getListAnnotationID, getListAnnotationNamespace, getLongAnnotationAnnotationCount, getLongAnnotationAnnotationRef, getLongAnnotationAnnotator, getMapAnnotationAnnotationCount, getMapAnnotationAnnotationRef, getMapAnnotationAnnotator, getMapAnnotationCount, getMapAnnotationDescription, getMapAnnotationID, getMapAnnotationNamespace, getMapAnnotationValue, getMaskAnnotationRef, getMaskFillColor, getMaskFillRule, getMaskFontFamily, getMaskFontSize, getMaskFontStyle, getMaskHeight, getMaskID, getMaskLineCap, getMaskLocked, getMaskStrokeColor, getMaskStrokeDashArray, getMaskStrokeWidth, getMaskText, getMaskTheC, getMaskTheT, getMaskTheZ, getMaskTransform, getMaskVisible, getMaskWidth, getMaskX, getMaskY, getMicrobeamManipulationCount, getMicrobeamManipulationDescription, getMicrobeamManipulationExperimenterRef, getMicrobeamManipulationID, getMicrobeamManipulationLightSourceSettingsAttenuation, getMicrobeamManipulationLightSourceSettingsCount, getMicrobeamManipulationLightSourceSettingsID, getMicrobeamManipulationLightSourceSettingsWavelength, getMicrobeamManipulationRefCount, getMicrobeamManipulationROIRef, getMicrobeamManipulationROIRefCount, getMicrobeamManipulationType, getMicroscopeLotNumber, getMicroscopeManufacturer, getMicroscopeModel, getMicroscopeSerialNumber, getMicroscopeType, getObjectiveAnnotationRef, getObjectiveAnnotationRefCount, getObjectiveCalibratedMagnification, getObjectiveCorrection, getObjectiveCount, getObjectiveID, getObjectiveImmersion, getObjectiveIris, getObjectiveLensNA, getObjectiveLotNumber, getObjectiveManufacturer, getObjectiveModel, getObjectiveNominalMagnification, getObjectiveSerialNumber, getObjectiveSettingsCorrectionCollar, getObjectiveSettingsID, getObjectiveSettingsMedium, getObjectiveSettingsRefractiveIndex, getObjectiveWorkingDistance, getPixelsBigEndian, getPixelsBinDataCount, getPixelsInterleaved, getPixelsSignificantBits, getPlaneAnnotationRef, getPlaneAnnotationRefCount, getPlaneHashSHA1, getPlateAcquisitionAnnotationRef, getPlateAcquisitionAnnotationRefCount, getPlateAcquisitionCount, getPlateAcquisitionDescription, getPlateAcquisitionEndTime, getPlateAcquisitionID, getPlateAcquisitionMaximumFieldCount, getPlateAcquisitionName, getPlateAcquisitionStartTime, getPlateAcquisitionWellSampleRef, getPlateAnnotationRef, getPlateAnnotationRefCount, getPlateColumnNamingConvention, getPlateColumns, getPlateCount, getPlateDescription, getPlateExternalIdentifier, getPlateFieldIndex, getPlateID, getPlateName, getPlateRefCount, getPlateRowNamingConvention, getPlateRows, getPlateStatus, getPlateWellOriginX, getPlateWellOriginY, getPointAnnotationRef, getPointFillColor, getPointFillRule, getPointFontFamily, getPointFontSize, getPointFontStyle, getPointID, getPointLineCap, getPointLocked, getPointStrokeColor, getPointStrokeDashArray, getPointStrokeWidth, getPointText, getPointTheC, getPointTheT, getPointTheZ, getPointTransform, getPointVisible, getPointX, getPointY, getPolygonAnnotationRef, getPolygonFillColor, getPolygonFillRule, getPolygonFontFamily, getPolygonFontSize, getPolygonFontStyle, getPolygonID, getPolygonLineCap, getPolygonLocked, getPolygonPoints, getPolygonStrokeColor, getPolygonStrokeDashArray, getPolygonStrokeWidth, getPolygonText, getPolygonTheC, getPolygonTheT, getPolygonTheZ, getPolygonTransform, getPolygonVisible, getPolylineAnnotationRef, getPolylineFillColor, getPolylineFillRule, getPolylineFontFamily, getPolylineFontSize, getPolylineFontStyle, getPolylineID, getPolylineLineCap, getPolylineLocked, getPolylineMarkerEnd, getPolylineMarkerStart, getPolylinePoints, getPolylineStrokeColor, getPolylineStrokeDashArray, getPolylineStrokeWidth, getPolylineText, getPolylineTheC, getPolylineTheT, getPolylineTheZ, getPolylineTransform, getPolylineVisible, getProjectAnnotationRef, getProjectAnnotationRefCount, getProjectCount, getProjectDatasetRef, getProjectDescription, getProjectExperimenterGroupRef, getProjectExperimenterRef, getProjectID, getProjectName, getReagentAnnotationRef, getReagentAnnotationRefCount, getReagentCount, getReagentDescription, getReagentID, getReagentName, getReagentReagentIdentifier, getRectangleAnnotationRef, getRectangleFillColor, getRectangleFillRule, getRectangleFontFamily, getRectangleFontSize, getRectangleFontStyle, getRectangleHeight, getRectangleID, getRectangleLineCap, getRectangleLocked, getRectangleStrokeColor, getRectangleStrokeDashArray, getRectangleStrokeWidth, getRectangleText, getRectangleTheC, getRectangleTheT, getRectangleTheZ, getRectangleTransform, getRectangleVisible, getRectangleWidth, getRectangleX, getRectangleY, getRightsRightsHeld, getRightsRightsHolder, getROIAnnotationRef, getROIAnnotationRefCount, getROICount, getROIDescription, getROIID, getROIName, getROINamespace, getScreenAnnotationRef, getScreenAnnotationRefCount, getScreenCount, getScreenDescription, getScreenID, getScreenName, getScreenPlateRef, getScreenProtocolDescription, getScreenProtocolIdentifier, getScreenReagentSetDescription, getScreenReagentSetIdentifier, getScreenType, getShapeAnnotationRefCount, getShapeCount, getShapeType, getStageLabelName, getStageLabelX, getStageLabelY, getStageLabelZ, getTagAnnotationAnnotationCount, getTagAnnotationAnnotationRef, getTagAnnotationAnnotator, getTermAnnotationAnnotationCount, getTermAnnotationAnnotationRef, getTermAnnotationAnnotator, getTiffDataCount, getTiffDataFirstC, getTiffDataFirstT, getTiffDataFirstZ, getTiffDataIFD, getTiffDataPlaneCount, getTimestampAnnotationAnnotationCount, getTimestampAnnotationAnnotationRef, getTimestampAnnotationAnnotator, getTransmittanceRangeCutIn, getTransmittanceRangeCutInTolerance, getTransmittanceRangeCutOut, getTransmittanceRangeCutOutTolerance, getTransmittanceRangeTransmittance, getUUID, getUUIDFileName, getUUIDValue, getWellAnnotationRef, getWellAnnotationRefCount, getWellColor, getWellColumn, getWellCount, getWellExternalDescription, getWellExternalIdentifier, getWellID, getWellReagentRef, getWellRow, getWellSampleCount, getWellSampleID, getWellSampleImageRef, getWellSampleIndex, getWellSamplePositionX, getWellSamplePositionY, getWellSampleRefCount, getWellSampleTimepoint, getWellType, getXMLAnnotationAnnotationCount, getXMLAnnotationAnnotationRef, getXMLAnnotationAnnotator, setArcAnnotationRef, setArcID, setArcLotNumber, setArcManufacturer, setArcModel, setArcPower, setArcSerialNumber, setArcType, setBinaryFileFileName, setBinaryFileMIMEType, setBinaryFileSize, setBinaryOnlyMetadataFile, setBinaryOnlyUUID, setBooleanAnnotationAnnotationRef, setBooleanAnnotationAnnotator, setBooleanAnnotationDescription, setBooleanAnnotationID, setBooleanAnnotationNamespace, setBooleanAnnotationValue, setChannelAcquisitionMode, setChannelAnnotationRef, setChannelColor, setChannelContrastMethod, setChannelEmissionWavelength, setChannelExcitationWavelength, setChannelFilterSetRef, setChannelFluor, setChannelID, setChannelIlluminationType, setChannelLightSourceSettingsAttenuation, setChannelLightSourceSettingsID, setChannelLightSourceSettingsWavelength, setChannelName, setChannelNDFilter, setChannelPinholeSize, setChannelPockelCellSetting, setChannelSamplesPerPixel, setCommentAnnotationAnnotationRef, setCommentAnnotationAnnotator, setCommentAnnotationDescription, setCommentAnnotationID, setCommentAnnotationNamespace, setCommentAnnotationValue, setDatasetAnnotationRef, setDatasetDescription, setDatasetExperimenterGroupRef, setDatasetExperimenterRef, setDatasetID, setDatasetImageRef, setDatasetName, setDetectorAmplificationGain, setDetectorAnnotationRef, setDetectorGain, setDetectorID, setDetectorLotNumber, setDetectorManufacturer, setDetectorModel, setDetectorOffset, setDetectorSerialNumber, setDetectorSettingsBinning, setDetectorSettingsGain, setDetectorSettingsID, setDetectorSettingsIntegration, setDetectorSettingsOffset, setDetectorSettingsReadOutRate, setDetectorSettingsVoltage, setDetectorSettingsZoom, setDetectorType, setDetectorVoltage, setDetectorZoom, setDichroicAnnotationRef, setDichroicID, setDichroicLotNumber, setDichroicManufacturer, setDichroicModel, setDichroicSerialNumber, setDoubleAnnotationAnnotationRef, setDoubleAnnotationAnnotator, setDoubleAnnotationDescription, setDoubleAnnotationID, setDoubleAnnotationNamespace, setDoubleAnnotationValue, setEllipseAnnotationRef, setEllipseFillColor, setEllipseFillRule, setEllipseFontFamily, setEllipseFontSize, setEllipseFontStyle, setEllipseID, setEllipseLineCap, setEllipseLocked, setEllipseRadiusX, setEllipseRadiusY, setEllipseStrokeColor, setEllipseStrokeDashArray, setEllipseStrokeWidth, setEllipseText, setEllipseTheC, setEllipseTheT, setEllipseTheZ, setEllipseTransform, setEllipseVisible, setEllipseX, setEllipseY, setExperimentDescription, setExperimenterAnnotationRef, setExperimenterEmail, setExperimenterFirstName, setExperimenterGroupAnnotationRef, setExperimenterGroupDescription, setExperimenterGroupExperimenterRef, setExperimenterGroupID, setExperimenterGroupLeader, setExperimenterGroupName, setExperimenterID, setExperimenterInstitution, setExperimenterLastName, setExperimenterMiddleName, setExperimenterUserName, setExperimentExperimenterRef, setExperimentID, setExperimentType, setFilamentAnnotationRef, setFilamentID, setFilamentLotNumber, setFilamentManufacturer, setFilamentModel, setFilamentPower, setFilamentSerialNumber, setFilamentType, setFileAnnotationAnnotationRef, setFileAnnotationAnnotator, setFileAnnotationDescription, setFileAnnotationID, setFileAnnotationNamespace, setFilterAnnotationRef, setFilterFilterWheel, setFilterID, setFilterLotNumber, setFilterManufacturer, setFilterModel, setFilterSerialNumber, setFilterSetDichroicRef, setFilterSetEmissionFilterRef, setFilterSetExcitationFilterRef, setFilterSetID, setFilterSetLotNumber, setFilterSetManufacturer, setFilterSetModel, setFilterSetSerialNumber, setFilterType, setGenericExcitationSourceAnnotationRef, setGenericExcitationSourceID, setGenericExcitationSourceLotNumber, setGenericExcitationSourceManufacturer, setGenericExcitationSourceMap, setGenericExcitationSourceModel, setGenericExcitationSourcePower, setGenericExcitationSourceSerialNumber, setImageAcquisitionDate, setImageAnnotationRef, setImageDescription, setImageExperimenterGroupRef, setImageExperimenterRef, setImageExperimentRef, setImageID, setImageInstrumentRef, setImageMicrobeamManipulationRef, setImageName, setImageROIRef, setImagingEnvironmentAirPressure, setImagingEnvironmentCO2Percent, setImagingEnvironmentHumidity, setImagingEnvironmentMap, setImagingEnvironmentTemperature, setInstrumentAnnotationRef, setInstrumentID, setLabelAnnotationRef, setLabelFillColor, setLabelFillRule, setLabelFontFamily, setLabelFontSize, setLabelFontStyle, setLabelID, setLabelLineCap, setLabelLocked, setLabelStrokeColor, setLabelStrokeDashArray, setLabelStrokeWidth, setLabelText, setLabelTheC, setLabelTheT, setLabelTheZ, setLabelTransform, setLabelVisible, setLabelX, setLabelY, setLaserAnnotationRef, setLaserFrequencyMultiplication, setLaserID, setLaserLaserMedium, setLaserLotNumber, setLaserManufacturer, setLaserModel, setLaserPockelCell, setLaserPower, setLaserPulse, setLaserPump, setLaserRepetitionRate, setLaserSerialNumber, setLaserTuneable, setLaserType, setLaserWavelength, setLightEmittingDiodeAnnotationRef, setLightEmittingDiodeID, setLightEmittingDiodeLotNumber, setLightEmittingDiodeManufacturer, setLightEmittingDiodeModel, setLightEmittingDiodePower, setLightEmittingDiodeSerialNumber, setLightPathAnnotationRef, setLightPathDichroicRef, setLightPathEmissionFilterRef, setLightPathExcitationFilterRef, setLineAnnotationRef, setLineFillColor, setLineFillRule, setLineFontFamily, setLineFontSize, setLineFontStyle, setLineID, setLineLineCap, setLineLocked, setLineMarkerEnd, setLineMarkerStart, setLineStrokeColor, setLineStrokeDashArray, setLineStrokeWidth, setLineText, setLineTheC, setLineTheT, setLineTheZ, setLineTransform, setLineVisible, setLineX1, setLineX2, setLineY1, setLineY2, setListAnnotationAnnotationRef, setListAnnotationAnnotator, setListAnnotationDescription, setListAnnotationID, setListAnnotationNamespace, setLongAnnotationAnnotationRef, setLongAnnotationAnnotator, setLongAnnotationDescription, setLongAnnotationID, setLongAnnotationNamespace, setLongAnnotationValue, setMapAnnotationAnnotationRef, setMapAnnotationAnnotator, setMapAnnotationDescription, setMapAnnotationID, setMapAnnotationNamespace, setMapAnnotationValue, setMaskAnnotationRef, setMaskBinData, setMaskFillColor, setMaskFillRule, setMaskFontFamily, setMaskFontSize, setMaskFontStyle, setMaskHeight, setMaskID, setMaskLineCap, setMaskLocked, setMaskStrokeColor, setMaskStrokeDashArray, setMaskStrokeWidth, setMaskText, setMaskTheC, setMaskTheT, setMaskTheZ, setMaskTransform, setMaskVisible, setMaskWidth, setMaskX, setMaskY, setMicrobeamManipulationDescription, setMicrobeamManipulationExperimenterRef, setMicrobeamManipulationID, setMicrobeamManipulationLightSourceSettingsAttenuation, setMicrobeamManipulationLightSourceSettingsID, setMicrobeamManipulationLightSourceSettingsWavelength, setMicrobeamManipulationROIRef, setMicrobeamManipulationType, setMicroscopeLotNumber, setMicroscopeManufacturer, setMicroscopeModel, setMicroscopeSerialNumber, setMicroscopeType, setObjectiveAnnotationRef, setObjectiveCalibratedMagnification, setObjectiveCorrection, setObjectiveID, setObjectiveImmersion, setObjectiveIris, setObjectiveLensNA, setObjectiveLotNumber, setObjectiveManufacturer, setObjectiveModel, setObjectiveNominalMagnification, setObjectiveSerialNumber, setObjectiveSettingsCorrectionCollar, setObjectiveSettingsID, setObjectiveSettingsMedium, setObjectiveSettingsRefractiveIndex, setObjectiveWorkingDistance, setPixelsBigEndian, setPixelsBinDataBigEndian, setPixelsDimensionOrder, setPixelsID, setPixelsInterleaved, setPixelsPhysicalSizeX, setPixelsPhysicalSizeY, setPixelsPhysicalSizeZ, setPixelsSignificantBits, setPixelsSizeC, setPixelsSizeT, setPixelsSizeX, setPixelsSizeY, setPixelsSizeZ, setPixelsTimeIncrement, setPixelsType, setPlaneAnnotationRef, setPlaneDeltaT, setPlaneExposureTime, setPlaneHashSHA1, setPlanePositionX, setPlanePositionY, setPlanePositionZ, setPlaneTheC, setPlaneTheT, setPlaneTheZ, setPlateAcquisitionAnnotationRef, setPlateAcquisitionDescription, setPlateAcquisitionEndTime, setPlateAcquisitionID, setPlateAcquisitionMaximumFieldCount, setPlateAcquisitionName, setPlateAcquisitionStartTime, setPlateAcquisitionWellSampleRef, setPlateAnnotationRef, setPlateColumnNamingConvention, setPlateColumns, setPlateDescription, setPlateExternalIdentifier, setPlateFieldIndex, setPlateID, setPlateName, setPlateRowNamingConvention, setPlateRows, setPlateStatus, setPlateWellOriginX, setPlateWellOriginY, setPointAnnotationRef, setPointFillColor, setPointFillRule, setPointFontFamily, setPointFontSize, setPointFontStyle, setPointID, setPointLineCap, setPointLocked, setPointStrokeColor, setPointStrokeDashArray, setPointStrokeWidth, setPointText, setPointTheC, setPointTheT, setPointTheZ, setPointTransform, setPointVisible, setPointX, setPointY, setPolygonAnnotationRef, setPolygonFillColor, setPolygonFillRule, setPolygonFontFamily, setPolygonFontSize, setPolygonFontStyle, setPolygonID, setPolygonLineCap, setPolygonLocked, setPolygonPoints, setPolygonStrokeColor, setPolygonStrokeDashArray, setPolygonStrokeWidth, setPolygonText, setPolygonTheC, setPolygonTheT, setPolygonTheZ, setPolygonTransform, setPolygonVisible, setPolylineAnnotationRef, setPolylineFillColor, setPolylineFillRule, setPolylineFontFamily, setPolylineFontSize, setPolylineFontStyle, setPolylineID, setPolylineLineCap, setPolylineLocked, setPolylineMarkerEnd, setPolylineMarkerStart, setPolylinePoints, setPolylineStrokeColor, setPolylineStrokeDashArray, setPolylineStrokeWidth, setPolylineText, setPolylineTheC, setPolylineTheT, setPolylineTheZ, setPolylineTransform, setPolylineVisible, setProjectAnnotationRef, setProjectDatasetRef, setProjectDescription, setProjectExperimenterGroupRef, setProjectExperimenterRef, setProjectID, setProjectName, setReagentAnnotationRef, setReagentDescription, setReagentID, setReagentName, setReagentReagentIdentifier, setRectangleAnnotationRef, setRectangleFillColor, setRectangleFillRule, setRectangleFontFamily, setRectangleFontSize, setRectangleFontStyle, setRectangleHeight, setRectangleID, setRectangleLineCap, setRectangleLocked, setRectangleStrokeColor, setRectangleStrokeDashArray, setRectangleStrokeWidth, setRectangleText, setRectangleTheC, setRectangleTheT, setRectangleTheZ, setRectangleTransform, setRectangleVisible, setRectangleWidth, setRectangleX, setRectangleY, setRightsRightsHeld, setRightsRightsHolder, setROIAnnotationRef, setROIDescription, setROIID, setROIName, setROINamespace, setRoot, setScreenAnnotationRef, setScreenDescription, setScreenID, setScreenName, setScreenPlateRef, setScreenProtocolDescription, setScreenProtocolIdentifier, setScreenReagentSetDescription, setScreenReagentSetIdentifier, setScreenType, setStageLabelName, setStageLabelX, setStageLabelY, setStageLabelZ, setTagAnnotationAnnotationRef, setTagAnnotationAnnotator, setTagAnnotationDescription, setTagAnnotationID, setTagAnnotationNamespace, setTagAnnotationValue, setTermAnnotationAnnotationRef, setTermAnnotationAnnotator, setTermAnnotationDescription, setTermAnnotationID, setTermAnnotationNamespace, setTermAnnotationValue, setTiffDataFirstC, setTiffDataFirstT, setTiffDataFirstZ, setTiffDataIFD, setTiffDataPlaneCount, setTimestampAnnotationAnnotationRef, setTimestampAnnotationAnnotator, setTimestampAnnotationDescription, setTimestampAnnotationID, setTimestampAnnotationNamespace, setTimestampAnnotationValue, setTransmittanceRangeCutIn, setTransmittanceRangeCutInTolerance, setTransmittanceRangeCutOut, setTransmittanceRangeCutOutTolerance, setTransmittanceRangeTransmittance, setUUID, setUUIDFileName, setUUIDValue, setWellAnnotationRef, setWellColor, setWellColumn, setWellExternalDescription, setWellExternalIdentifier, setWellID, setWellReagentRef, setWellRow, setWellSampleID, setWellSampleImageRef, setWellSampleIndex, setWellSamplePositionX, setWellSamplePositionY, setWellSampleTimepoint, setWellType, setXMLAnnotationAnnotationRef, setXMLAnnotationAnnotator, setXMLAnnotationDescription, setXMLAnnotationID, setXMLAnnotationNamespace, setXMLAnnotationValue

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ome.xml.meta.MetadataStore
createRoot, setArcAnnotationRef, setArcID, setArcLotNumber, setArcManufacturer, setArcModel, setArcPower, setArcSerialNumber, setArcType, setBinaryFileFileName, setBinaryFileMIMEType, setBinaryFileSize, setBinaryOnlyMetadataFile, setBinaryOnlyUUID, setBooleanAnnotationAnnotationRef, setBooleanAnnotationAnnotator, setBooleanAnnotationDescription, setBooleanAnnotationID, setBooleanAnnotationNamespace, setBooleanAnnotationValue, setChannelAcquisitionMode, setChannelAnnotationRef, setChannelColor, setChannelContrastMethod, setChannelEmissionWavelength, setChannelExcitationWavelength, setChannelFilterSetRef, setChannelFluor, setChannelID, setChannelIlluminationType, setChannelLightSourceSettingsAttenuation, setChannelLightSourceSettingsID, setChannelLightSourceSettingsWavelength, setChannelName, setChannelNDFilter, setChannelPinholeSize, setChannelPockelCellSetting, setChannelSamplesPerPixel, setCommentAnnotationAnnotationRef, setCommentAnnotationAnnotator, setCommentAnnotationDescription, setCommentAnnotationID, setCommentAnnotationNamespace, setCommentAnnotationValue, setDatasetAnnotationRef, setDatasetDescription, setDatasetExperimenterGroupRef, setDatasetExperimenterRef, setDatasetID, setDatasetImageRef, setDatasetName, setDetectorAmplificationGain, setDetectorAnnotationRef, setDetectorGain, setDetectorID, setDetectorLotNumber, setDetectorManufacturer, setDetectorModel, setDetectorOffset, setDetectorSerialNumber, setDetectorSettingsBinning, setDetectorSettingsGain, setDetectorSettingsID, setDetectorSettingsIntegration, setDetectorSettingsOffset, setDetectorSettingsReadOutRate, setDetectorSettingsVoltage, setDetectorSettingsZoom, setDetectorType, setDetectorVoltage, setDetectorZoom, setDichroicAnnotationRef, setDichroicID, setDichroicLotNumber, setDichroicManufacturer, setDichroicModel, setDichroicSerialNumber, setDoubleAnnotationAnnotationRef, setDoubleAnnotationAnnotator, setDoubleAnnotationDescription, setDoubleAnnotationID, setDoubleAnnotationNamespace, setDoubleAnnotationValue, setEllipseAnnotationRef, setEllipseFillColor, setEllipseFillRule, setEllipseFontFamily, setEllipseFontSize, setEllipseFontStyle, setEllipseID, setEllipseLineCap, setEllipseLocked, setEllipseRadiusX, setEllipseRadiusY, setEllipseStrokeColor, setEllipseStrokeDashArray, setEllipseStrokeWidth, setEllipseText, setEllipseTheC, setEllipseTheT, setEllipseTheZ, setEllipseTransform, setEllipseVisible, setEllipseX, setEllipseY, setExperimentDescription, setExperimenterAnnotationRef, setExperimenterEmail, setExperimenterFirstName, setExperimenterGroupAnnotationRef, setExperimenterGroupDescription, setExperimenterGroupExperimenterRef, setExperimenterGroupID, setExperimenterGroupLeader, setExperimenterGroupName, setExperimenterID, setExperimenterInstitution, setExperimenterLastName, setExperimenterMiddleName, setExperimenterUserName, setExperimentExperimenterRef, setExperimentID, setExperimentType, setFilamentAnnotationRef, setFilamentID, setFilamentLotNumber, setFilamentManufacturer, setFilamentModel, setFilamentPower, setFilamentSerialNumber, setFilamentType, setFileAnnotationAnnotationRef, setFileAnnotationAnnotator, setFileAnnotationDescription, setFileAnnotationID, setFileAnnotationNamespace, setFilterAnnotationRef, setFilterFilterWheel, setFilterID, setFilterLotNumber, setFilterManufacturer, setFilterModel, setFilterSerialNumber, setFilterSetDichroicRef, setFilterSetEmissionFilterRef, setFilterSetExcitationFilterRef, setFilterSetID, setFilterSetLotNumber, setFilterSetManufacturer, setFilterSetModel, setFilterSetSerialNumber, setFilterType, setGenericExcitationSourceAnnotationRef, setGenericExcitationSourceID, setGenericExcitationSourceLotNumber, setGenericExcitationSourceManufacturer, setGenericExcitationSourceMap, setGenericExcitationSourceModel, setGenericExcitationSourcePower, setGenericExcitationSourceSerialNumber, setImageAcquisitionDate, setImageAnnotationRef, setImageDescription, setImageExperimenterGroupRef, setImageExperimenterRef, setImageExperimentRef, setImageID, setImageInstrumentRef, setImageMicrobeamManipulationRef, setImageName, setImageROIRef, setImagingEnvironmentAirPressure, setImagingEnvironmentCO2Percent, setImagingEnvironmentHumidity, setImagingEnvironmentMap, setImagingEnvironmentTemperature, setInstrumentAnnotationRef, setInstrumentID, setLabelAnnotationRef, setLabelFillColor, setLabelFillRule, setLabelFontFamily, setLabelFontSize, setLabelFontStyle, setLabelID, setLabelLineCap, setLabelLocked, setLabelStrokeColor, setLabelStrokeDashArray, setLabelStrokeWidth, setLabelText, setLabelTheC, setLabelTheT, setLabelTheZ, setLabelTransform, setLabelVisible, setLabelX, setLabelY, setLaserAnnotationRef, setLaserFrequencyMultiplication, setLaserID, setLaserLaserMedium, setLaserLotNumber, setLaserManufacturer, setLaserModel, setLaserPockelCell, setLaserPower, setLaserPulse, setLaserPump, setLaserRepetitionRate, setLaserSerialNumber, setLaserTuneable, setLaserType, setLaserWavelength, setLightEmittingDiodeAnnotationRef, setLightEmittingDiodeID, setLightEmittingDiodeLotNumber, setLightEmittingDiodeManufacturer, setLightEmittingDiodeModel, setLightEmittingDiodePower, setLightEmittingDiodeSerialNumber, setLightPathAnnotationRef, setLightPathDichroicRef, setLightPathEmissionFilterRef, setLightPathExcitationFilterRef, setLineAnnotationRef, setLineFillColor, setLineFillRule, setLineFontFamily, setLineFontSize, setLineFontStyle, setLineID, setLineLineCap, setLineLocked, setLineMarkerEnd, setLineMarkerStart, setLineStrokeColor, setLineStrokeDashArray, setLineStrokeWidth, setLineText, setLineTheC, setLineTheT, setLineTheZ, setLineTransform, setLineVisible, setLineX1, setLineX2, setLineY1, setLineY2, setListAnnotationAnnotationRef, setListAnnotationAnnotator, setListAnnotationDescription, setListAnnotationID, setListAnnotationNamespace, setLongAnnotationAnnotationRef, setLongAnnotationAnnotator, setLongAnnotationDescription, setLongAnnotationID, setLongAnnotationNamespace, setLongAnnotationValue, setMapAnnotationAnnotationRef, setMapAnnotationAnnotator, setMapAnnotationDescription, setMapAnnotationID, setMapAnnotationNamespace, setMapAnnotationValue, setMaskAnnotationRef, setMaskBinData, setMaskFillColor, setMaskFillRule, setMaskFontFamily, setMaskFontSize, setMaskFontStyle, setMaskHeight, setMaskID, setMaskLineCap, setMaskLocked, setMaskStrokeColor, setMaskStrokeDashArray, setMaskStrokeWidth, setMaskText, setMaskTheC, setMaskTheT, setMaskTheZ, setMaskTransform, setMaskVisible, setMaskWidth, setMaskX, setMaskY, setMicrobeamManipulationDescription, setMicrobeamManipulationExperimenterRef, setMicrobeamManipulationID, setMicrobeamManipulationLightSourceSettingsAttenuation, setMicrobeamManipulationLightSourceSettingsID, setMicrobeamManipulationLightSourceSettingsWavelength, setMicrobeamManipulationROIRef, setMicrobeamManipulationType, setMicroscopeLotNumber, setMicroscopeManufacturer, setMicroscopeModel, setMicroscopeSerialNumber, setMicroscopeType, setObjectiveAnnotationRef, setObjectiveCalibratedMagnification, setObjectiveCorrection, setObjectiveID, setObjectiveImmersion, setObjectiveIris, setObjectiveLensNA, setObjectiveLotNumber, setObjectiveManufacturer, setObjectiveModel, setObjectiveNominalMagnification, setObjectiveSerialNumber, setObjectiveSettingsCorrectionCollar, setObjectiveSettingsID, setObjectiveSettingsMedium, setObjectiveSettingsRefractiveIndex, setObjectiveWorkingDistance, setPixelsBigEndian, setPixelsBinDataBigEndian, setPixelsDimensionOrder, setPixelsID, setPixelsInterleaved, setPixelsPhysicalSizeX, setPixelsPhysicalSizeY, setPixelsPhysicalSizeZ, setPixelsSignificantBits, setPixelsSizeC, setPixelsSizeT, setPixelsSizeX, setPixelsSizeY, setPixelsSizeZ, setPixelsTimeIncrement, setPixelsType, setPlaneAnnotationRef, setPlaneDeltaT, setPlaneExposureTime, setPlaneHashSHA1, setPlanePositionX, setPlanePositionY, setPlanePositionZ, setPlaneTheC, setPlaneTheT, setPlaneTheZ, setPlateAcquisitionAnnotationRef, setPlateAcquisitionDescription, setPlateAcquisitionEndTime, setPlateAcquisitionID, setPlateAcquisitionMaximumFieldCount, setPlateAcquisitionName, setPlateAcquisitionStartTime, setPlateAcquisitionWellSampleRef, setPlateAnnotationRef, setPlateColumnNamingConvention, setPlateColumns, setPlateDescription, setPlateExternalIdentifier, setPlateFieldIndex, setPlateID, setPlateName, setPlateRowNamingConvention, setPlateRows, setPlateStatus, setPlateWellOriginX, setPlateWellOriginY, setPointAnnotationRef, setPointFillColor, setPointFillRule, setPointFontFamily, setPointFontSize, setPointFontStyle, setPointID, setPointLineCap, setPointLocked, setPointStrokeColor, setPointStrokeDashArray, setPointStrokeWidth, setPointText, setPointTheC, setPointTheT, setPointTheZ, setPointTransform, setPointVisible, setPointX, setPointY, setPolygonAnnotationRef, setPolygonFillColor, setPolygonFillRule, setPolygonFontFamily, setPolygonFontSize, setPolygonFontStyle, setPolygonID, setPolygonLineCap, setPolygonLocked, setPolygonPoints, setPolygonStrokeColor, setPolygonStrokeDashArray, setPolygonStrokeWidth, setPolygonText, setPolygonTheC, setPolygonTheT, setPolygonTheZ, setPolygonTransform, setPolygonVisible, setPolylineAnnotationRef, setPolylineFillColor, setPolylineFillRule, setPolylineFontFamily, setPolylineFontSize, setPolylineFontStyle, setPolylineID, setPolylineLineCap, setPolylineLocked, setPolylineMarkerEnd, setPolylineMarkerStart, setPolylinePoints, setPolylineStrokeColor, setPolylineStrokeDashArray, setPolylineStrokeWidth, setPolylineText, setPolylineTheC, setPolylineTheT, setPolylineTheZ, setPolylineTransform, setPolylineVisible, setProjectAnnotationRef, setProjectDatasetRef, setProjectDescription, setProjectExperimenterGroupRef, setProjectExperimenterRef, setProjectID, setProjectName, setReagentAnnotationRef, setReagentDescription, setReagentID, setReagentName, setReagentReagentIdentifier, setRectangleAnnotationRef, setRectangleFillColor, setRectangleFillRule, setRectangleFontFamily, setRectangleFontSize, setRectangleFontStyle, setRectangleHeight, setRectangleID, setRectangleLineCap, setRectangleLocked, setRectangleStrokeColor, setRectangleStrokeDashArray, setRectangleStrokeWidth, setRectangleText, setRectangleTheC, setRectangleTheT, setRectangleTheZ, setRectangleTransform, setRectangleVisible, setRectangleWidth, setRectangleX, setRectangleY, setRightsRightsHeld, setRightsRightsHolder, setROIAnnotationRef, setROIDescription, setROIID, setROIName, setROINamespace, setRoot, setScreenAnnotationRef, setScreenDescription, setScreenID, setScreenName, setScreenPlateRef, setScreenProtocolDescription, setScreenProtocolIdentifier, setScreenReagentSetDescription, setScreenReagentSetIdentifier, setScreenType, setStageLabelName, setStageLabelX, setStageLabelY, setStageLabelZ, setTagAnnotationAnnotationRef, setTagAnnotationAnnotator, setTagAnnotationDescription, setTagAnnotationID, setTagAnnotationNamespace, setTagAnnotationValue, setTermAnnotationAnnotationRef, setTermAnnotationAnnotator, setTermAnnotationDescription, setTermAnnotationID, setTermAnnotationNamespace, setTermAnnotationValue, setTiffDataFirstC, setTiffDataFirstT, setTiffDataFirstZ, setTiffDataIFD, setTiffDataPlaneCount, setTimestampAnnotationAnnotationRef, setTimestampAnnotationAnnotator, setTimestampAnnotationDescription, setTimestampAnnotationID, setTimestampAnnotationNamespace, setTimestampAnnotationValue, setTransmittanceRangeCutIn, setTransmittanceRangeCutInTolerance, setTransmittanceRangeCutOut, setTransmittanceRangeCutOutTolerance, setTransmittanceRangeTransmittance, setUUID, setUUIDFileName, setUUIDValue, setWellAnnotationRef, setWellColor, setWellColumn, setWellExternalDescription, setWellExternalIdentifier, setWellID, setWellReagentRef, setWellRow, setWellSampleID, setWellSampleImageRef, setWellSampleIndex, setWellSamplePositionX, setWellSamplePositionY, setWellSampleTimepoint, setWellType, setXMLAnnotationAnnotationRef, setXMLAnnotationAnnotator, setXMLAnnotationDescription, setXMLAnnotationID, setXMLAnnotationNamespace, setXMLAnnotationValue

Methods inherited from interface ome.xml.meta.MetadataRetrieve
getArcAnnotationRef, getArcID, getArcLotNumber, getArcManufacturer, getArcModel, getArcPower, getArcSerialNumber, getArcType, getBinaryFileFileName, getBinaryFileMIMEType, getBinaryFileSize, getBinaryOnlyMetadataFile, getBinaryOnlyUUID, getBooleanAnnotationAnnotationCount, getBooleanAnnotationAnnotationRef, getBooleanAnnotationAnnotator, getChannelAnnotationRef, getChannelAnnotationRefCount, getChannelFilterSetRef, getChannelLightSourceSettingsAttenuation, getChannelLightSourceSettingsID, getChannelLightSourceSettingsWavelength, getCommentAnnotationAnnotationCount, getCommentAnnotationAnnotationRef, getCommentAnnotationAnnotator, getDatasetAnnotationRef, getDatasetAnnotationRefCount, getDatasetCount, getDatasetDescription, getDatasetExperimenterGroupRef, getDatasetExperimenterRef, getDatasetID, getDatasetImageRef, getDatasetImageRefCount, getDatasetName, getDatasetRefCount, getDetectorAmplificationGain, getDetectorAnnotationRef, getDetectorAnnotationRefCount, getDetectorCount, getDetectorGain, getDetectorID, getDetectorLotNumber, getDetectorManufacturer, getDetectorModel, getDetectorOffset, getDetectorSerialNumber, getDetectorSettingsBinning, getDetectorSettingsGain, getDetectorSettingsID, getDetectorSettingsIntegration, getDetectorSettingsOffset, getDetectorSettingsReadOutRate, getDetectorSettingsVoltage, getDetectorSettingsZoom, getDetectorType, getDetectorVoltage, getDetectorZoom, getDichroicAnnotationRef, getDichroicAnnotationRefCount, getDichroicCount, getDichroicID, getDichroicLotNumber, getDichroicManufacturer, getDichroicModel, getDichroicSerialNumber, getDoubleAnnotationAnnotationCount, getDoubleAnnotationAnnotationRef, getDoubleAnnotationAnnotator, getEllipseAnnotationRef, getEllipseFillColor, getEllipseFillRule, getEllipseFontFamily, getEllipseFontSize, getEllipseFontStyle, getEllipseID, getEllipseLineCap, getEllipseLocked, getEllipseRadiusX, getEllipseRadiusY, getEllipseStrokeColor, getEllipseStrokeDashArray, getEllipseStrokeWidth, getEllipseText, getEllipseTheC, getEllipseTheT, getEllipseTheZ, getEllipseTransform, getEllipseVisible, getEllipseX, getEllipseY, getExperimentCount, getExperimentDescription, getExperimenterAnnotationRef, getExperimenterAnnotationRefCount, getExperimenterCount, getExperimenterEmail, getExperimenterFirstName, getExperimenterGroupAnnotationRef, getExperimenterGroupAnnotationRefCount, getExperimenterGroupCount, getExperimenterGroupDescription, getExperimenterGroupExperimenterRef, getExperimenterGroupExperimenterRefCount, getExperimenterGroupID, getExperimenterGroupLeader, getExperimenterGroupName, getExperimenterID, getExperimenterInstitution, getExperimenterLastName, getExperimenterMiddleName, getExperimenterUserName, getExperimentExperimenterRef, getExperimentID, getExperimentType, getFilamentAnnotationRef, getFilamentID, getFilamentLotNumber, getFilamentManufacturer, getFilamentModel, getFilamentPower, getFilamentSerialNumber, getFilamentType, getFileAnnotationAnnotationCount, getFileAnnotationAnnotationRef, getFileAnnotationAnnotator, getFileAnnotationCount, getFileAnnotationDescription, getFileAnnotationID, getFileAnnotationNamespace, getFilterAnnotationRef, getFilterAnnotationRefCount, getFilterCount, getFilterFilterWheel, getFilterID, getFilterLotNumber, getFilterManufacturer, getFilterModel, getFilterSerialNumber, getFilterSetCount, getFilterSetDichroicRef, getFilterSetEmissionFilterRef, getFilterSetEmissionFilterRefCount, getFilterSetExcitationFilterRef, getFilterSetExcitationFilterRefCount, getFilterSetID, getFilterSetLotNumber, getFilterSetManufacturer, getFilterSetModel, getFilterSetSerialNumber, getFilterType, getGenericExcitationSourceAnnotationRef, getGenericExcitationSourceID, getGenericExcitationSourceLotNumber, getGenericExcitationSourceManufacturer, getGenericExcitationSourceMap, getGenericExcitationSourceModel, getGenericExcitationSourcePower, getGenericExcitationSourceSerialNumber, getImageExperimenterGroupRef, getImageExperimenterRef, getImageExperimentRef, getImageInstrumentRef, getImageMicrobeamManipulationRef, getImageROIRef, getImageROIRefCount, getImagingEnvironmentAirPressure, getImagingEnvironmentCO2Percent, getImagingEnvironmentHumidity, getImagingEnvironmentMap, getImagingEnvironmentTemperature, getInstrumentAnnotationRef, getInstrumentAnnotationRefCount, getInstrumentCount, getInstrumentID, getLabelAnnotationRef, getLabelFillColor, getLabelFillRule, getLabelFontFamily, getLabelFontSize, getLabelFontStyle, getLabelID, getLabelLineCap, getLabelLocked, getLabelStrokeColor, getLabelStrokeDashArray, getLabelStrokeWidth, getLabelText, getLabelTheC, getLabelTheT, getLabelTheZ, getLabelTransform, getLabelVisible, getLabelX, getLabelY, getLaserAnnotationRef, getLaserFrequencyMultiplication, getLaserID, getLaserLaserMedium, getLaserLotNumber, getLaserManufacturer, getLaserModel, getLaserPockelCell, getLaserPower, getLaserPulse, getLaserPump, getLaserRepetitionRate, getLaserSerialNumber, getLaserTuneable, getLaserType, getLaserWavelength, getLeaderCount, getLightEmittingDiodeAnnotationRef, getLightEmittingDiodeID, getLightEmittingDiodeLotNumber, getLightEmittingDiodeManufacturer, getLightEmittingDiodeModel, getLightEmittingDiodePower, getLightEmittingDiodeSerialNumber, getLightPathAnnotationRef, getLightPathAnnotationRefCount, getLightPathDichroicRef, getLightPathEmissionFilterRef, getLightPathEmissionFilterRefCount, getLightPathExcitationFilterRef, getLightPathExcitationFilterRefCount, getLightSourceAnnotationRefCount, getLightSourceCount, getLightSourceType, getLineAnnotationRef, getLineFillColor, getLineFillRule, getLineFontFamily, getLineFontSize, getLineFontStyle, getLineID, getLineLineCap, getLineLocked, getLineMarkerEnd, getLineMarkerStart, getLineStrokeColor, getLineStrokeDashArray, getLineStrokeWidth, getLineText, getLineTheC, getLineTheT, getLineTheZ, getLineTransform, getLineVisible, getLineX1, getLineX2, getLineY1, getLineY2, getListAnnotationAnnotationCount, getListAnnotationAnnotationRef, getListAnnotationAnnotator, getListAnnotationCount, getListAnnotationDescription, getListAnnotationID, getListAnnotationNamespace, getLongAnnotationAnnotationCount, getLongAnnotationAnnotationRef, getLongAnnotationAnnotator, getMapAnnotationAnnotationCount, getMapAnnotationAnnotationRef, getMapAnnotationAnnotator, getMapAnnotationCount, getMapAnnotationDescription, getMapAnnotationID, getMapAnnotationNamespace, getMapAnnotationValue, getMaskAnnotationRef, getMaskFillColor, getMaskFillRule, getMaskFontFamily, getMaskFontSize, getMaskFontStyle, getMaskHeight, getMaskID, getMaskLineCap, getMaskLocked, getMaskStrokeColor, getMaskStrokeDashArray, getMaskStrokeWidth, getMaskText, getMaskTheC, getMaskTheT, getMaskTheZ, getMaskTransform, getMaskVisible, getMaskWidth, getMaskX, getMaskY, getMicrobeamManipulationCount, getMicrobeamManipulationDescription, getMicrobeamManipulationExperimenterRef, getMicrobeamManipulationID, getMicrobeamManipulationLightSourceSettingsAttenuation, getMicrobeamManipulationLightSourceSettingsCount, getMicrobeamManipulationLightSourceSettingsID, getMicrobeamManipulationLightSourceSettingsWavelength, getMicrobeamManipulationRefCount, getMicrobeamManipulationROIRef, getMicrobeamManipulationROIRefCount, getMicrobeamManipulationType, getMicroscopeLotNumber, getMicroscopeManufacturer, getMicroscopeModel, getMicroscopeSerialNumber, getMicroscopeType, getObjectiveAnnotationRef, getObjectiveAnnotationRefCount, getObjectiveCalibratedMagnification, getObjectiveCorrection, getObjectiveCount, getObjectiveID, getObjectiveImmersion, getObjectiveIris, getObjectiveLensNA, getObjectiveLotNumber, getObjectiveManufacturer, getObjectiveModel, getObjectiveNominalMagnification, getObjectiveSerialNumber, getObjectiveSettingsCorrectionCollar, getObjectiveSettingsID, getObjectiveSettingsMedium, getObjectiveSettingsRefractiveIndex, getObjectiveWorkingDistance, getPixelsBigEndian, getPixelsBinDataCount, getPixelsInterleaved, getPixelsSignificantBits, getPlaneAnnotationRef, getPlaneAnnotationRefCount, getPlaneHashSHA1, getPlateAcquisitionAnnotationRef, getPlateAcquisitionAnnotationRefCount, getPlateAcquisitionCount, getPlateAcquisitionDescription, getPlateAcquisitionEndTime, getPlateAcquisitionID, getPlateAcquisitionMaximumFieldCount, getPlateAcquisitionName, getPlateAcquisitionStartTime, getPlateAcquisitionWellSampleRef, getPlateAnnotationRef, getPlateAnnotationRefCount, getPlateColumnNamingConvention, getPlateColumns, getPlateCount, getPlateDescription, getPlateExternalIdentifier, getPlateFieldIndex, getPlateID, getPlateName, getPlateRefCount, getPlateRowNamingConvention, getPlateRows, getPlateStatus, getPlateWellOriginX, getPlateWellOriginY, getPointAnnotationRef, getPointFillColor, getPointFillRule, getPointFontFamily, getPointFontSize, getPointFontStyle, getPointID, getPointLineCap, getPointLocked, getPointStrokeColor, getPointStrokeDashArray, getPointStrokeWidth, getPointText, getPointTheC, getPointTheT, getPointTheZ, getPointTransform, getPointVisible, getPointX, getPointY, getPolygonAnnotationRef, getPolygonFillColor, getPolygonFillRule, getPolygonFontFamily, getPolygonFontSize, getPolygonFontStyle, getPolygonID, getPolygonLineCap, getPolygonLocked, getPolygonPoints, getPolygonStrokeColor, getPolygonStrokeDashArray, getPolygonStrokeWidth, getPolygonText, getPolygonTheC, getPolygonTheT, getPolygonTheZ, getPolygonTransform, getPolygonVisible, getPolylineAnnotationRef, getPolylineFillColor, getPolylineFillRule, getPolylineFontFamily, getPolylineFontSize, getPolylineFontStyle, getPolylineID, getPolylineLineCap, getPolylineLocked, getPolylineMarkerEnd, getPolylineMarkerStart, getPolylinePoints, getPolylineStrokeColor, getPolylineStrokeDashArray, getPolylineStrokeWidth, getPolylineText, getPolylineTheC, getPolylineTheT, getPolylineTheZ, getPolylineTransform, getPolylineVisible, getProjectAnnotationRef, getProjectAnnotationRefCount, getProjectCount, getProjectDatasetRef, getProjectDescription, getProjectExperimenterGroupRef, getProjectExperimenterRef, getProjectID, getProjectName, getReagentAnnotationRef, getReagentAnnotationRefCount, getReagentCount, getReagentDescription, getReagentID, getReagentName, getReagentReagentIdentifier, getRectangleAnnotationRef, getRectangleFillColor, getRectangleFillRule, getRectangleFontFamily, getRectangleFontSize, getRectangleFontStyle, getRectangleHeight, getRectangleID, getRectangleLineCap, getRectangleLocked, getRectangleStrokeColor, getRectangleStrokeDashArray, getRectangleStrokeWidth, getRectangleText, getRectangleTheC, getRectangleTheT, getRectangleTheZ, getRectangleTransform, getRectangleVisible, getRectangleWidth, getRectangleX, getRectangleY, getRightsRightsHeld, getRightsRightsHolder, getROIAnnotationRef, getROIAnnotationRefCount, getROICount, getROIDescription, getROIID, getROIName, getROINamespace, getScreenAnnotationRef, getScreenAnnotationRefCount, getScreenCount, getScreenDescription, getScreenID, getScreenName, getScreenPlateRef, getScreenProtocolDescription, getScreenProtocolIdentifier, getScreenReagentSetDescription, getScreenReagentSetIdentifier, getScreenType, getShapeAnnotationRefCount, getShapeCount, getShapeType, getStageLabelName, getStageLabelX, getStageLabelY, getStageLabelZ, getTagAnnotationAnnotationCount, getTagAnnotationAnnotationRef, getTagAnnotationAnnotator, getTermAnnotationAnnotationCount, getTermAnnotationAnnotationRef, getTermAnnotationAnnotator, getTiffDataCount, getTiffDataFirstC, getTiffDataFirstT, getTiffDataFirstZ, getTiffDataIFD, getTiffDataPlaneCount, getTimestampAnnotationAnnotationCount, getTimestampAnnotationAnnotationRef, getTimestampAnnotationAnnotator, getTransmittanceRangeCutIn, getTransmittanceRangeCutInTolerance, getTransmittanceRangeCutOut, getTransmittanceRangeCutOutTolerance, getTransmittanceRangeTransmittance, getUUID, getUUIDFileName, getUUIDValue, getWellAnnotationRef, getWellAnnotationRefCount, getWellColor, getWellColumn, getWellCount, getWellExternalDescription, getWellExternalIdentifier, getWellID, getWellReagentRef, getWellRow, getWellSampleCount, getWellSampleID, getWellSampleImageRef, getWellSampleIndex, getWellSamplePositionX, getWellSamplePositionY, getWellSampleRefCount, getWellSampleTimepoint, getWellType, getXMLAnnotationAnnotationCount, getXMLAnnotationAnnotationRef, getXMLAnnotationAnnotator

- Constructor Detail
  - OmeroMetadata
```
public OmeroMetadata(DatabaseIdentity db)
```
- Method Detail
  - getRoot
```
public ome.xml.meta.MetadataRoot getRoot()
```
    Specified by:
    
    getRoot in interface ome.xml.meta.MetadataStore
    
    Overrides:
    
    getRoot in class ome.xml.meta.DummyMetadata
  - addImage
```
public void addImage(omero.model.Image image)
```
  - getImage
```
public omero.model.Image getImage(int i)
```
  - sizeImages
```
public int sizeImages()
```
  - handleLsid
```
public String handleLsid(omero.model.IObject obj)
```
  - initialize
```
public void initialize(org.hibernate.Session session)
```
  - getImageAcquisitionDate
```
public ome.xml.model.primitives.Timestamp getImageAcquisitionDate(int imageIndex)
```
    Specified by:
    
    getImageAcquisitionDate in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getImageAcquisitionDate in class ome.xml.meta.DummyMetadata
  - getImageAnnotationRef
```
public String getImageAnnotationRef(int imageIndex,
                           int annotationRefIndex)
```
    Specified by:
    
    getImageAnnotationRef in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getImageAnnotationRef in class ome.xml.meta.DummyMetadata
  - getImageAnnotationRefCount
```
public int getImageAnnotationRefCount(int imageIndex)
```
    Specified by:
    
    getImageAnnotationRefCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getImageAnnotationRefCount in class ome.xml.meta.DummyMetadata
  - getImageCount
```
public int getImageCount()
```
    Specified by:
    
    getImageCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getImageCount in class ome.xml.meta.DummyMetadata
  - getImageDescription
```
public String getImageDescription(int imageIndex)
```
    Specified by:
    
    getImageDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getImageDescription in class ome.xml.meta.DummyMetadata
  - getImageID
```
public String getImageID(int imageIndex)
```
    Specified by:
    
    getImageID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getImageID in class ome.xml.meta.DummyMetadata
  - getImageName
```
public String getImageName(int imageIndex)
```
    Specified by:
    
    getImageName in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getImageName in class ome.xml.meta.DummyMetadata
  - getPixelsBinDataBigEndian
```
public Boolean getPixelsBinDataBigEndian(int imageIndex,
                                int binDataIndex)
```
    Specified by:
    
    getPixelsBinDataBigEndian in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsBinDataBigEndian in class ome.xml.meta.DummyMetadata
  - getPixelsDimensionOrder
```
public ome.xml.model.enums.DimensionOrder getPixelsDimensionOrder(int imageIndex)
```
    Specified by:
    
    getPixelsDimensionOrder in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsDimensionOrder in class ome.xml.meta.DummyMetadata
  - getPixelsID
```
public String getPixelsID(int imageIndex)
```
    Specified by:
    
    getPixelsID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsID in class ome.xml.meta.DummyMetadata
  - getPixelsPhysicalSizeX
```
public ome.units.quantity.Length getPixelsPhysicalSizeX(int imageIndex)
```
    Specified by:
    
    getPixelsPhysicalSizeX in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsPhysicalSizeX in class ome.xml.meta.DummyMetadata
  - getPixelsPhysicalSizeY
```
public ome.units.quantity.Length getPixelsPhysicalSizeY(int imageIndex)
```
    Specified by:
    
    getPixelsPhysicalSizeY in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsPhysicalSizeY in class ome.xml.meta.DummyMetadata
  - getPixelsPhysicalSizeZ
```
public ome.units.quantity.Length getPixelsPhysicalSizeZ(int imageIndex)
```
    Specified by:
    
    getPixelsPhysicalSizeZ in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsPhysicalSizeZ in class ome.xml.meta.DummyMetadata
  - getPixelsSizeC
```
public ome.xml.model.primitives.PositiveInteger getPixelsSizeC(int imageIndex)
```
    Specified by:
    
    getPixelsSizeC in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsSizeC in class ome.xml.meta.DummyMetadata
  - getPixelsSizeT
```
public ome.xml.model.primitives.PositiveInteger getPixelsSizeT(int imageIndex)
```
    Specified by:
    
    getPixelsSizeT in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsSizeT in class ome.xml.meta.DummyMetadata
  - getPixelsSizeX
```
public ome.xml.model.primitives.PositiveInteger getPixelsSizeX(int imageIndex)
```
    Specified by:
    
    getPixelsSizeX in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsSizeX in class ome.xml.meta.DummyMetadata
  - getPixelsSizeY
```
public ome.xml.model.primitives.PositiveInteger getPixelsSizeY(int imageIndex)
```
    Specified by:
    
    getPixelsSizeY in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsSizeY in class ome.xml.meta.DummyMetadata
  - getPixelsSizeZ
```
public ome.xml.model.primitives.PositiveInteger getPixelsSizeZ(int imageIndex)
```
    Specified by:
    
    getPixelsSizeZ in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsSizeZ in class ome.xml.meta.DummyMetadata
  - getPixelsTimeIncrement
```
public ome.units.quantity.Time getPixelsTimeIncrement(int imageIndex)
```
    Specified by:
    
    getPixelsTimeIncrement in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsTimeIncrement in class ome.xml.meta.DummyMetadata
  - getPixelsType
```
public ome.xml.model.enums.PixelType getPixelsType(int imageIndex)
```
    Specified by:
    
    getPixelsType in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPixelsType in class ome.xml.meta.DummyMetadata
  - getChannelAcquisitionMode
```
public ome.xml.model.enums.AcquisitionMode getChannelAcquisitionMode(int imageIndex,
                                                            int channelIndex)
```
    Specified by:
    
    getChannelAcquisitionMode in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelAcquisitionMode in class ome.xml.meta.DummyMetadata
  - getChannelColor
```
public ome.xml.model.primitives.Color getChannelColor(int imageIndex,
                                             int channelIndex)
```
    Specified by:
    
    getChannelColor in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelColor in class ome.xml.meta.DummyMetadata
  - getChannelContrastMethod
```
public ome.xml.model.enums.ContrastMethod getChannelContrastMethod(int imageIndex,
                                                          int channelIndex)
```
    Specified by:
    
    getChannelContrastMethod in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelContrastMethod in class ome.xml.meta.DummyMetadata
  - getChannelCount
```
public int getChannelCount(int imageIndex)
```
    Specified by:
    
    getChannelCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelCount in class ome.xml.meta.DummyMetadata
  - getChannelEmissionWavelength
```
public ome.units.quantity.Length getChannelEmissionWavelength(int imageIndex,
                                                     int channelIndex)
```
    Specified by:
    
    getChannelEmissionWavelength in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelEmissionWavelength in class ome.xml.meta.DummyMetadata
  - getChannelExcitationWavelength
```
public ome.units.quantity.Length getChannelExcitationWavelength(int imageIndex,
                                                       int channelIndex)
```
    Specified by:
    
    getChannelExcitationWavelength in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelExcitationWavelength in class ome.xml.meta.DummyMetadata
  - getChannelFluor
```
public String getChannelFluor(int imageIndex,
                     int channelIndex)
```
    Specified by:
    
    getChannelFluor in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelFluor in class ome.xml.meta.DummyMetadata
  - getChannelID
```
public String getChannelID(int imageIndex,
                  int channelIndex)
```
    Specified by:
    
    getChannelID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelID in class ome.xml.meta.DummyMetadata
  - getChannelIlluminationType
```
public ome.xml.model.enums.IlluminationType getChannelIlluminationType(int imageIndex,
                                                              int channelIndex)
```
    Specified by:
    
    getChannelIlluminationType in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelIlluminationType in class ome.xml.meta.DummyMetadata
  - getChannelName
```
public String getChannelName(int imageIndex,
                    int channelIndex)
```
    Specified by:
    
    getChannelName in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelName in class ome.xml.meta.DummyMetadata
  - getChannelNDFilter
```
public Double getChannelNDFilter(int imageIndex,
                        int channelIndex)
```
    Specified by:
    
    getChannelNDFilter in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelNDFilter in class ome.xml.meta.DummyMetadata
  - getChannelPinholeSize
```
public ome.units.quantity.Length getChannelPinholeSize(int imageIndex,
                                              int channelIndex)
```
    Specified by:
    
    getChannelPinholeSize in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelPinholeSize in class ome.xml.meta.DummyMetadata
  - getChannelPockelCellSetting
```
public Integer getChannelPockelCellSetting(int imageIndex,
                                  int channelIndex)
```
    Specified by:
    
    getChannelPockelCellSetting in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelPockelCellSetting in class ome.xml.meta.DummyMetadata
  - getChannelSamplesPerPixel
```
public ome.xml.model.primitives.PositiveInteger getChannelSamplesPerPixel(int imageIndex,
                                                                 int channelIndex)
```
    Specified by:
    
    getChannelSamplesPerPixel in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getChannelSamplesPerPixel in class ome.xml.meta.DummyMetadata
  - getPlaneCount
```
public int getPlaneCount(int imageIndex)
```
    Specified by:
    
    getPlaneCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlaneCount in class ome.xml.meta.DummyMetadata
  - getPlaneDeltaT
```
public ome.units.quantity.Time getPlaneDeltaT(int imageIndex,
                                     int planeIndex)
```
    Specified by:
    
    getPlaneDeltaT in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlaneDeltaT in class ome.xml.meta.DummyMetadata
  - getPlaneExposureTime
```
public ome.units.quantity.Time getPlaneExposureTime(int imageIndex,
                                           int planeIndex)
```
    Specified by:
    
    getPlaneExposureTime in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlaneExposureTime in class ome.xml.meta.DummyMetadata
  - getPlanePositionX
```
public ome.units.quantity.Length getPlanePositionX(int imageIndex,
                                          int planeIndex)
```
    Specified by:
    
    getPlanePositionX in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlanePositionX in class ome.xml.meta.DummyMetadata
  - getPlanePositionY
```
public ome.units.quantity.Length getPlanePositionY(int imageIndex,
                                          int planeIndex)
```
    Specified by:
    
    getPlanePositionY in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlanePositionY in class ome.xml.meta.DummyMetadata
  - getPlanePositionZ
```
public ome.units.quantity.Length getPlanePositionZ(int imageIndex,
                                          int planeIndex)
```
    Specified by:
    
    getPlanePositionZ in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlanePositionZ in class ome.xml.meta.DummyMetadata
  - getPlaneTheC
```
public ome.xml.model.primitives.NonNegativeInteger getPlaneTheC(int imageIndex,
                                                       int planeIndex)
```
    Specified by:
    
    getPlaneTheC in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlaneTheC in class ome.xml.meta.DummyMetadata
  - getPlaneTheT
```
public ome.xml.model.primitives.NonNegativeInteger getPlaneTheT(int imageIndex,
                                                       int planeIndex)
```
    Specified by:
    
    getPlaneTheT in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlaneTheT in class ome.xml.meta.DummyMetadata
  - getPlaneTheZ
```
public ome.xml.model.primitives.NonNegativeInteger getPlaneTheZ(int imageIndex,
                                                       int planeIndex)
```
    Specified by:
    
    getPlaneTheZ in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getPlaneTheZ in class ome.xml.meta.DummyMetadata
  - getXMLAnnotationCount
```
public int getXMLAnnotationCount()
```
    Specified by:
    
    getXMLAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getXMLAnnotationCount in class ome.xml.meta.DummyMetadata
  - getXMLAnnotationDescription
```
public String getXMLAnnotationDescription(int XMLAnnotationIndex)
```
    Specified by:
    
    getXMLAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getXMLAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getXMLAnnotationID
```
public String getXMLAnnotationID(int XMLAnnotationIndex)
```
    Specified by:
    
    getXMLAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getXMLAnnotationID in class ome.xml.meta.DummyMetadata
  - getXMLAnnotationNamespace
```
public String getXMLAnnotationNamespace(int XMLAnnotationIndex)
```
    Specified by:
    
    getXMLAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getXMLAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getXMLAnnotationValue
```
public String getXMLAnnotationValue(int XMLAnnotationIndex)
```
    Specified by:
    
    getXMLAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getXMLAnnotationValue in class ome.xml.meta.DummyMetadata
  - getLongAnnotationCount
```
public int getLongAnnotationCount()
```
    Specified by:
    
    getLongAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getLongAnnotationCount in class ome.xml.meta.DummyMetadata
  - getLongAnnotationDescription
```
public String getLongAnnotationDescription(int longAnnotationIndex)
```
    Specified by:
    
    getLongAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getLongAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getLongAnnotationID
```
public String getLongAnnotationID(int longAnnotationIndex)
```
    Specified by:
    
    getLongAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getLongAnnotationID in class ome.xml.meta.DummyMetadata
  - getLongAnnotationNamespace
```
public String getLongAnnotationNamespace(int longAnnotationIndex)
```
    Specified by:
    
    getLongAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getLongAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getLongAnnotationValue
```
public Long getLongAnnotationValue(int longAnnotationIndex)
```
    Specified by:
    
    getLongAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getLongAnnotationValue in class ome.xml.meta.DummyMetadata
  - getBooleanAnnotationCount
```
public int getBooleanAnnotationCount()
```
    Specified by:
    
    getBooleanAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getBooleanAnnotationCount in class ome.xml.meta.DummyMetadata
  - getBooleanAnnotationDescription
```
public String getBooleanAnnotationDescription(int booleanAnnotationIndex)
```
    Specified by:
    
    getBooleanAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getBooleanAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getBooleanAnnotationID
```
public String getBooleanAnnotationID(int booleanAnnotationIndex)
```
    Specified by:
    
    getBooleanAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getBooleanAnnotationID in class ome.xml.meta.DummyMetadata
  - getBooleanAnnotationNamespace
```
public String getBooleanAnnotationNamespace(int booleanAnnotationIndex)
```
    Specified by:
    
    getBooleanAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getBooleanAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getBooleanAnnotationValue
```
public Boolean getBooleanAnnotationValue(int booleanAnnotationIndex)
```
    Specified by:
    
    getBooleanAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getBooleanAnnotationValue in class ome.xml.meta.DummyMetadata
  - getDoubleAnnotationCount
```
public int getDoubleAnnotationCount()
```
    Specified by:
    
    getDoubleAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getDoubleAnnotationCount in class ome.xml.meta.DummyMetadata
  - getDoubleAnnotationDescription
```
public String getDoubleAnnotationDescription(int doubleAnnotationIndex)
```
    Specified by:
    
    getDoubleAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getDoubleAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getDoubleAnnotationID
```
public String getDoubleAnnotationID(int doubleAnnotationIndex)
```
    Specified by:
    
    getDoubleAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getDoubleAnnotationID in class ome.xml.meta.DummyMetadata
  - getDoubleAnnotationNamespace
```
public String getDoubleAnnotationNamespace(int doubleAnnotationIndex)
```
    Specified by:
    
    getDoubleAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getDoubleAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getDoubleAnnotationValue
```
public Double getDoubleAnnotationValue(int doubleAnnotationIndex)
```
    Specified by:
    
    getDoubleAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getDoubleAnnotationValue in class ome.xml.meta.DummyMetadata
  - getCommentAnnotationCount
```
public int getCommentAnnotationCount()
```
    Specified by:
    
    getCommentAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getCommentAnnotationCount in class ome.xml.meta.DummyMetadata
  - getCommentAnnotationDescription
```
public String getCommentAnnotationDescription(int commentAnnotationIndex)
```
    Specified by:
    
    getCommentAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getCommentAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getCommentAnnotationID
```
public String getCommentAnnotationID(int commentAnnotationIndex)
```
    Specified by:
    
    getCommentAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getCommentAnnotationID in class ome.xml.meta.DummyMetadata
  - getCommentAnnotationNamespace
```
public String getCommentAnnotationNamespace(int commentAnnotationIndex)
```
    Specified by:
    
    getCommentAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getCommentAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getCommentAnnotationValue
```
public String getCommentAnnotationValue(int commentAnnotationIndex)
```
    Specified by:
    
    getCommentAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getCommentAnnotationValue in class ome.xml.meta.DummyMetadata
  - getTimestampAnnotationCount
```
public int getTimestampAnnotationCount()
```
    Specified by:
    
    getTimestampAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTimestampAnnotationCount in class ome.xml.meta.DummyMetadata
  - getTimestampAnnotationDescription
```
public String getTimestampAnnotationDescription(int timestampAnnotationIndex)
```
    Specified by:
    
    getTimestampAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTimestampAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getTimestampAnnotationID
```
public String getTimestampAnnotationID(int timestampAnnotationIndex)
```
    Specified by:
    
    getTimestampAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTimestampAnnotationID in class ome.xml.meta.DummyMetadata
  - getTimestampAnnotationNamespace
```
public String getTimestampAnnotationNamespace(int timestampAnnotationIndex)
```
    Specified by:
    
    getTimestampAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTimestampAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getTimestampAnnotationValue
```
public ome.xml.model.primitives.Timestamp getTimestampAnnotationValue(int timestampAnnotationIndex)
```
    Specified by:
    
    getTimestampAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTimestampAnnotationValue in class ome.xml.meta.DummyMetadata
  - getTagAnnotationCount
```
public int getTagAnnotationCount()
```
    Specified by:
    
    getTagAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTagAnnotationCount in class ome.xml.meta.DummyMetadata
  - getTagAnnotationDescription
```
public String getTagAnnotationDescription(int tagAnnotationIndex)
```
    Specified by:
    
    getTagAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTagAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getTagAnnotationID
```
public String getTagAnnotationID(int tagAnnotationIndex)
```
    Specified by:
    
    getTagAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTagAnnotationID in class ome.xml.meta.DummyMetadata
  - getTagAnnotationNamespace
```
public String getTagAnnotationNamespace(int tagAnnotationIndex)
```
    Specified by:
    
    getTagAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTagAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getTagAnnotationValue
```
public String getTagAnnotationValue(int tagAnnotationIndex)
```
    Specified by:
    
    getTagAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTagAnnotationValue in class ome.xml.meta.DummyMetadata
  - getTermAnnotationCount
```
public int getTermAnnotationCount()
```
    Specified by:
    
    getTermAnnotationCount in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTermAnnotationCount in class ome.xml.meta.DummyMetadata
  - getTermAnnotationDescription
```
public String getTermAnnotationDescription(int termAnnotationIndex)
```
    Specified by:
    
    getTermAnnotationDescription in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTermAnnotationDescription in class ome.xml.meta.DummyMetadata
  - getTermAnnotationID
```
public String getTermAnnotationID(int termAnnotationIndex)
```
    Specified by:
    
    getTermAnnotationID in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTermAnnotationID in class ome.xml.meta.DummyMetadata
  - getTermAnnotationNamespace
```
public String getTermAnnotationNamespace(int termAnnotationIndex)
```
    Specified by:
    
    getTermAnnotationNamespace in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTermAnnotationNamespace in class ome.xml.meta.DummyMetadata
  - getTermAnnotationValue
```
public String getTermAnnotationValue(int termAnnotationIndex)
```
    Specified by:
    
    getTermAnnotationValue in interface ome.xml.meta.MetadataRetrieve
    
    Overrides:
    
    getTermAnnotationValue in class ome.xml.meta.DummyMetadata

Class OmeroMetadata

Constructor Summary

Method Summary

Methods inherited from class ome.xml.meta.DummyMetadata

Methods inherited from class java.lang.Object

Methods inherited from interface ome.xml.meta.MetadataStore

Methods inherited from interface ome.xml.meta.MetadataRetrieve

Constructor Detail

OmeroMetadata

Method Detail

getRoot

addImage

getImage

sizeImages

handleLsid

initialize

getImageAcquisitionDate

getImageAnnotationRef

getImageAnnotationRefCount

getImageCount

getImageDescription

getImageID

getImageName

getPixelsBinDataBigEndian

getPixelsDimensionOrder

getPixelsID

getPixelsPhysicalSizeX

getPixelsPhysicalSizeY

getPixelsPhysicalSizeZ

getPixelsSizeC

getPixelsSizeT

getPixelsSizeX

getPixelsSizeY

getPixelsSizeZ

getPixelsTimeIncrement

getPixelsType

getChannelAcquisitionMode

getChannelColor

getChannelContrastMethod

getChannelCount

getChannelEmissionWavelength

getChannelExcitationWavelength

getChannelFluor

getChannelID

getChannelIlluminationType

getChannelName

getChannelNDFilter

getChannelPinholeSize

getChannelPockelCellSetting

getChannelSamplesPerPixel

getPlaneCount

getPlaneDeltaT

getPlaneExposureTime

getPlanePositionX

getPlanePositionY

getPlanePositionZ

getPlaneTheC

getPlaneTheT

getPlaneTheZ

getXMLAnnotationCount

getXMLAnnotationDescription

getXMLAnnotationID

getXMLAnnotationNamespace

getXMLAnnotationValue

getLongAnnotationCount

getLongAnnotationDescription

getLongAnnotationID

getLongAnnotationNamespace

getLongAnnotationValue

getBooleanAnnotationCount

getBooleanAnnotationDescription

getBooleanAnnotationID

getBooleanAnnotationNamespace

getBooleanAnnotationValue

getDoubleAnnotationCount

getDoubleAnnotationDescription

getDoubleAnnotationID

getDoubleAnnotationNamespace

getDoubleAnnotationValue

getCommentAnnotationCount