Uses of Class
ome.model.annotations.Annotation

Packages that use Annotation

Package	Description
ome.api	Contains the central verbs of the Omero System.
ome.logic	The central repository of implementations which will be accessible through this server.
ome.model	Central interfaces in the Omero object model.
ome.model.acquisition
ome.model.annotations
ome.model.containers
ome.model.core
ome.model.fs
ome.model.meta
ome.model.roi
ome.model.screen
ome.services	Base services package for OMERO API services This includes classes that implement OMERO API services described as interfaces in the OMERO Common component.
ome.services.fulltext.bridges	Custom FieldBridge implementations which can be configured to be run on each indexing activity.
ome.services.graphs	Server classes for handling complicated graphs of model objects.
ome.services.search	Internal search implementation classes.
ome.services.sharing	ome.api.IShare support infrastructure.
ome.tools.hibernate	Hibernate specific tools for the OMERO Server Classes/Interfaces that implement Hibernate method mechanics for the OMERO server Related Documentation For more information, please see: TODO

Uses of Annotation in ome.api

Methods in ome.api with type parameters of type Annotation

Modifier and Type	Method and Description
<A extends Annotation> Set<A>	IMetadata.loadAnnotation(Set<Long> annotationIds) Loads the specified annotations.
<T extends IObject,A extends Annotation> Map<Long,Set<A>>	IMetadata.loadAnnotations(Class<T> nodeType, Set<Long> rootNodeIds, Set<String> annotationType, Set<Long> annotatorIds, Parameters options) Loads all the annotations of given types, that have been attached to the specified rootNodes for the specified annotatorIds.
<A extends Annotation> Set<A>	IMetadata.loadSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, Parameters options) Loads all the annotations of a given type.
<A extends Annotation> Map<Long,Set<A>>	IMetadata.loadSpecifiedAnnotationsLinkedTo(Class type, Set<String> include, Set<String> exclude, Class rootNodeType, Set<Long> rootNodeIds, Parameters options) Loads the annotations of a given type linked to the specified objects.

Methods in ome.api that return types with arguments of type Annotation

Modifier and Type	Method and Description
Map<String,Annotation>	Search.currentMetadata() Provides access to the extra query information (for example Lucene score and boost values) for a single call to Search.next().
List<Map<String,Annotation>>	Search.currentMetadataList() Provides access to the extra query information (for example Lucene score and boost values) for a single call to Search.results().
List<Annotation>	IShare.getComments(long shareId) Looks up all comments which belong to the share.

Methods in ome.api with parameters of type Annotation

Modifier and Type	Method and Description
void	Search.byAnnotatedWith(Annotation... examples) Finds entities annotated with an Annotation similar to the example.
void	IShare.deleteComment(Annotation comment) Deletes comment from the database.

Uses of Annotation in ome.logic

Methods in ome.logic with type parameters of type Annotation

Modifier and Type	Method and Description
<A extends Annotation> Set<A>	MetadataImpl.loadAnnotation(Set<Long> annotationIds) Implemented as specified by the IMetadata I/F
<T extends IObject,A extends Annotation> Map<Long,Set<A>>	MetadataImpl.loadAnnotations(Class<T> rootNodeType, Set<Long> rootNodeIds, Set<String> annotationTypes, Set<Long> annotatorIds, Parameters options) Implemented as specified by the IMetadata I/F
<A extends Annotation> Set<A>	MetadataImpl.loadSpecifiedAnnotations(Class type, Set<String> include, Set<String> exclude, Parameters options) Implemented as specified by the IMetadata I/F
<A extends Annotation> Map<Long,Set<A>>	MetadataImpl.loadSpecifiedAnnotationsLinkedTo(Class type, Set<String> include, Set<String> exclude, Class rootNodeType, Set<Long> rootNodeIds, Parameters options) Implemented as specified by the IMetadata I/F

Uses of Annotation in ome.model

Methods in ome.model that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	IAnnotated.linkedAnnotationIterator()
List<Annotation>	IAnnotated.linkedAnnotationList()

Methods in ome.model with parameters of type Annotation

Modifier and Type	Method and Description
<T> T	IAnnotated.linkAnnotation(Annotation addition)
void	IAnnotated.unlinkAnnotation(Annotation removal)

Uses of Annotation in ome.model.acquisition

Methods in ome.model.acquisition that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Detector.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Dichroic.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Filter.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Instrument.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	LightPath.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	LightSource.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Objective.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Detector.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Dichroic.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Filter.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Instrument.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	LightPath.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	LightSource.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Objective.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.acquisition with parameters of type Annotation

Modifier and Type	Method and Description
Set<DetectorAnnotationLink>	Detector.findDetectorAnnotationLink(Annotation target) find all ome.model.annotations.DetectorAnnotationLink which have the argument as their child.
Set<DichroicAnnotationLink>	Dichroic.findDichroicAnnotationLink(Annotation target) find all ome.model.annotations.DichroicAnnotationLink which have the argument as their child.
Set<FilterAnnotationLink>	Filter.findFilterAnnotationLink(Annotation target) find all ome.model.annotations.FilterAnnotationLink which have the argument as their child.
Set<InstrumentAnnotationLink>	Instrument.findInstrumentAnnotationLink(Annotation target) find all ome.model.annotations.InstrumentAnnotationLink which have the argument as their child.
Set<LightPathAnnotationLink>	LightPath.findLightPathAnnotationLink(Annotation target) find all ome.model.annotations.LightPathAnnotationLink which have the argument as their child.
Set<LightSourceAnnotationLink>	LightSource.findLightSourceAnnotationLink(Annotation target) find all ome.model.annotations.LightSourceAnnotationLink which have the argument as their child.
Set<ObjectiveAnnotationLink>	Objective.findObjectiveAnnotationLink(Annotation target) find all ome.model.annotations.ObjectiveAnnotationLink which have the argument as their child.
DetectorAnnotationLink	Detector.linkAnnotation(Annotation addition) Adds a ome.model.annotations.DetectorAnnotationLink to annotationLinks .
DichroicAnnotationLink	Dichroic.linkAnnotation(Annotation addition) Adds a ome.model.annotations.DichroicAnnotationLink to annotationLinks .
FilterAnnotationLink	Filter.linkAnnotation(Annotation addition) Adds a ome.model.annotations.FilterAnnotationLink to annotationLinks .
InstrumentAnnotationLink	Instrument.linkAnnotation(Annotation addition) Adds a ome.model.annotations.InstrumentAnnotationLink to annotationLinks .
LightPathAnnotationLink	LightPath.linkAnnotation(Annotation addition) Adds a ome.model.annotations.LightPathAnnotationLink to annotationLinks .
LightSourceAnnotationLink	LightSource.linkAnnotation(Annotation addition) Adds a ome.model.annotations.LightSourceAnnotationLink to annotationLinks .
ObjectiveAnnotationLink	Objective.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ObjectiveAnnotationLink to annotationLinks .
void	Detector.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Dichroic.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Filter.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Instrument.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	LightPath.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	LightSource.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Objective.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.model.annotations

Subclasses of Annotation in ome.model.annotations

Modifier and Type	Class and Description
class	BasicAnnotation
class	BooleanAnnotation
class	CommentAnnotation
class	DoubleAnnotation
class	FileAnnotation
class	ListAnnotation
class	LongAnnotation
class	MapAnnotation
class	NumericAnnotation
class	TagAnnotation
class	TermAnnotation
class	TextAnnotation
class	TimestampAnnotation
class	TypeAnnotation
class	XmlAnnotation

Methods in ome.model.annotations that return Annotation

Modifier and Type	Method and Description
Annotation	AnnotationAnnotationLink.child()
Annotation	ChannelAnnotationLink.child()
Annotation	DatasetAnnotationLink.child()
Annotation	DetectorAnnotationLink.child()
Annotation	DichroicAnnotationLink.child()
Annotation	ExperimenterAnnotationLink.child()
Annotation	ExperimenterGroupAnnotationLink.child()
Annotation	FilesetAnnotationLink.child()
Annotation	FilterAnnotationLink.child()
Annotation	ImageAnnotationLink.child()
Annotation	InstrumentAnnotationLink.child()
Annotation	LightPathAnnotationLink.child()
Annotation	LightSourceAnnotationLink.child()
Annotation	NamespaceAnnotationLink.child()
Annotation	NodeAnnotationLink.child()
Annotation	ObjectiveAnnotationLink.child()
Annotation	OriginalFileAnnotationLink.child()
Annotation	PlaneInfoAnnotationLink.child()
Annotation	PlateAcquisitionAnnotationLink.child()
Annotation	PlateAnnotationLink.child()
Annotation	ProjectAnnotationLink.child()
Annotation	ReagentAnnotationLink.child()
Annotation	RoiAnnotationLink.child()
Annotation	ScreenAnnotationLink.child()
Annotation	SessionAnnotationLink.child()
Annotation	ShapeAnnotationLink.child()
Annotation	WellAnnotationLink.child()
Annotation	AnnotationAnnotationLink.parent()

Methods in ome.model.annotations that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Annotation.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Annotation.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.annotations with parameters of type Annotation

Modifier and Type	Method and Description
Set<AnnotationAnnotationLink>	Annotation.findAnnotationAnnotationLink(Annotation target) find all ome.model.annotations.AnnotationAnnotationLink which have the argument as their child.
void	AnnotationAnnotationLink.link(Annotation parent, Annotation child)
void	ChannelAnnotationLink.link(Channel parent, Annotation child)
void	DatasetAnnotationLink.link(Dataset parent, Annotation child)
void	DetectorAnnotationLink.link(Detector parent, Annotation child)
void	DichroicAnnotationLink.link(Dichroic parent, Annotation child)
void	ExperimenterAnnotationLink.link(Experimenter parent, Annotation child)
void	ExperimenterGroupAnnotationLink.link(ExperimenterGroup parent, Annotation child)
void	FilesetAnnotationLink.link(Fileset parent, Annotation child)
void	FilterAnnotationLink.link(Filter parent, Annotation child)
void	ImageAnnotationLink.link(Image parent, Annotation child)
void	InstrumentAnnotationLink.link(Instrument parent, Annotation child)
void	LightPathAnnotationLink.link(LightPath parent, Annotation child)
void	LightSourceAnnotationLink.link(LightSource parent, Annotation child)
void	NamespaceAnnotationLink.link(Namespace parent, Annotation child)
void	NodeAnnotationLink.link(Node parent, Annotation child)
void	ObjectiveAnnotationLink.link(Objective parent, Annotation child)
void	OriginalFileAnnotationLink.link(OriginalFile parent, Annotation child)
void	PlaneInfoAnnotationLink.link(PlaneInfo parent, Annotation child)
void	PlateAcquisitionAnnotationLink.link(PlateAcquisition parent, Annotation child)
void	PlateAnnotationLink.link(Plate parent, Annotation child)
void	ProjectAnnotationLink.link(Project parent, Annotation child)
void	ReagentAnnotationLink.link(Reagent parent, Annotation child)
void	RoiAnnotationLink.link(Roi parent, Annotation child)
void	ScreenAnnotationLink.link(Screen parent, Annotation child)
void	SessionAnnotationLink.link(Session parent, Annotation child)
void	ShapeAnnotationLink.link(Shape parent, Annotation child)
void	WellAnnotationLink.link(Well parent, Annotation child)
AnnotationAnnotationLink	Annotation.linkAnnotation(Annotation addition) Adds a ome.model.annotations.AnnotationAnnotationLink to annotationLinks .
void	Annotation.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.model.containers

Methods in ome.model.containers that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Dataset.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Project.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Dataset.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Project.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.containers with parameters of type Annotation

Modifier and Type	Method and Description
Set<DatasetAnnotationLink>	Dataset.findDatasetAnnotationLink(Annotation target) find all ome.model.annotations.DatasetAnnotationLink which have the argument as their child.
Set<ProjectAnnotationLink>	Project.findProjectAnnotationLink(Annotation target) find all ome.model.annotations.ProjectAnnotationLink which have the argument as their child.
DatasetAnnotationLink	Dataset.linkAnnotation(Annotation addition) Adds a ome.model.annotations.DatasetAnnotationLink to annotationLinks .
ProjectAnnotationLink	Project.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ProjectAnnotationLink to annotationLinks .
void	Dataset.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Project.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.model.core

Methods in ome.model.core that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Channel.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Image.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	OriginalFile.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	PlaneInfo.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Channel.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Image.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	OriginalFile.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	PlaneInfo.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.core with parameters of type Annotation

Modifier and Type	Method and Description
Set<ChannelAnnotationLink>	Channel.findChannelAnnotationLink(Annotation target) find all ome.model.annotations.ChannelAnnotationLink which have the argument as their child.
Set<ImageAnnotationLink>	Image.findImageAnnotationLink(Annotation target) find all ome.model.annotations.ImageAnnotationLink which have the argument as their child.
Set<OriginalFileAnnotationLink>	OriginalFile.findOriginalFileAnnotationLink(Annotation target) find all ome.model.annotations.OriginalFileAnnotationLink which have the argument as their child.
Set<PlaneInfoAnnotationLink>	PlaneInfo.findPlaneInfoAnnotationLink(Annotation target) find all ome.model.annotations.PlaneInfoAnnotationLink which have the argument as their child.
ChannelAnnotationLink	Channel.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ChannelAnnotationLink to annotationLinks .
ImageAnnotationLink	Image.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ImageAnnotationLink to annotationLinks .
OriginalFileAnnotationLink	OriginalFile.linkAnnotation(Annotation addition) Adds a ome.model.annotations.OriginalFileAnnotationLink to annotationLinks .
PlaneInfoAnnotationLink	PlaneInfo.linkAnnotation(Annotation addition) Adds a ome.model.annotations.PlaneInfoAnnotationLink to annotationLinks .
void	Channel.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Image.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	OriginalFile.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	PlaneInfo.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.model.fs

Methods in ome.model.fs that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Fileset.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Fileset.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.fs with parameters of type Annotation

Modifier and Type	Method and Description
Set<FilesetAnnotationLink>	Fileset.findFilesetAnnotationLink(Annotation target) find all ome.model.annotations.FilesetAnnotationLink which have the argument as their child.
FilesetAnnotationLink	Fileset.linkAnnotation(Annotation addition) Adds a ome.model.annotations.FilesetAnnotationLink to annotationLinks .
void	Fileset.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.model.meta

Methods in ome.model.meta that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Experimenter.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	ExperimenterGroup.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Namespace.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Node.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Session.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Experimenter.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	ExperimenterGroup.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Namespace.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Node.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Session.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.meta with parameters of type Annotation

Modifier and Type	Method and Description
Set<ExperimenterAnnotationLink>	Experimenter.findExperimenterAnnotationLink(Annotation target) find all ome.model.annotations.ExperimenterAnnotationLink which have the argument as their child.
Set<ExperimenterGroupAnnotationLink>	ExperimenterGroup.findExperimenterGroupAnnotationLink(Annotation target) find all ome.model.annotations.ExperimenterGroupAnnotationLink which have the argument as their child.
Set<NamespaceAnnotationLink>	Namespace.findNamespaceAnnotationLink(Annotation target) find all ome.model.annotations.NamespaceAnnotationLink which have the argument as their child.
Set<NodeAnnotationLink>	Node.findNodeAnnotationLink(Annotation target) find all ome.model.annotations.NodeAnnotationLink which have the argument as their child.
Set<SessionAnnotationLink>	Session.findSessionAnnotationLink(Annotation target) find all ome.model.annotations.SessionAnnotationLink which have the argument as their child.
ExperimenterAnnotationLink	Experimenter.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ExperimenterAnnotationLink to annotationLinks .
ExperimenterGroupAnnotationLink	ExperimenterGroup.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ExperimenterGroupAnnotationLink to annotationLinks .
NamespaceAnnotationLink	Namespace.linkAnnotation(Annotation addition) Adds a ome.model.annotations.NamespaceAnnotationLink to annotationLinks .
NodeAnnotationLink	Node.linkAnnotation(Annotation addition) Adds a ome.model.annotations.NodeAnnotationLink to annotationLinks .
SessionAnnotationLink	Session.linkAnnotation(Annotation addition) Adds a ome.model.annotations.SessionAnnotationLink to annotationLinks .
void	Experimenter.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	ExperimenterGroup.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Namespace.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Node.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Session.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.model.roi

Methods in ome.model.roi that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Roi.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Shape.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Roi.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Shape.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.roi with parameters of type Annotation

Modifier and Type	Method and Description
Set<RoiAnnotationLink>	Roi.findRoiAnnotationLink(Annotation target) find all ome.model.annotations.RoiAnnotationLink which have the argument as their child.
Set<ShapeAnnotationLink>	Shape.findShapeAnnotationLink(Annotation target) find all ome.model.annotations.ShapeAnnotationLink which have the argument as their child.
RoiAnnotationLink	Roi.linkAnnotation(Annotation addition) Adds a ome.model.annotations.RoiAnnotationLink to annotationLinks .
ShapeAnnotationLink	Shape.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ShapeAnnotationLink to annotationLinks .
void	Roi.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Shape.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.model.screen

Methods in ome.model.screen that return types with arguments of type Annotation

Modifier and Type	Method and Description
Iterator<Annotation>	Plate.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	PlateAcquisition.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Reagent.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Screen.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
Iterator<Annotation>	Well.linkedAnnotationIterator() provides an iterator over the parent values of the annotationLinks.
List<Annotation>	Plate.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	PlateAcquisition.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Reagent.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Screen.linkedAnnotationList() produces a List-copy of the underlying collection.
List<Annotation>	Well.linkedAnnotationList() produces a List-copy of the underlying collection.

Methods in ome.model.screen with parameters of type Annotation

Modifier and Type	Method and Description
Set<PlateAcquisitionAnnotationLink>	PlateAcquisition.findPlateAcquisitionAnnotationLink(Annotation target) find all ome.model.annotations.PlateAcquisitionAnnotationLink which have the argument as their child.
Set<PlateAnnotationLink>	Plate.findPlateAnnotationLink(Annotation target) find all ome.model.annotations.PlateAnnotationLink which have the argument as their child.
Set<ReagentAnnotationLink>	Reagent.findReagentAnnotationLink(Annotation target) find all ome.model.annotations.ReagentAnnotationLink which have the argument as their child.
Set<ScreenAnnotationLink>	Screen.findScreenAnnotationLink(Annotation target) find all ome.model.annotations.ScreenAnnotationLink which have the argument as their child.
Set<WellAnnotationLink>	Well.findWellAnnotationLink(Annotation target) find all ome.model.annotations.WellAnnotationLink which have the argument as their child.
PlateAnnotationLink	Plate.linkAnnotation(Annotation addition) Adds a ome.model.annotations.PlateAnnotationLink to annotationLinks .
PlateAcquisitionAnnotationLink	PlateAcquisition.linkAnnotation(Annotation addition) Adds a ome.model.annotations.PlateAcquisitionAnnotationLink to annotationLinks .
ReagentAnnotationLink	Reagent.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ReagentAnnotationLink to annotationLinks .
ScreenAnnotationLink	Screen.linkAnnotation(Annotation addition) Adds a ome.model.annotations.ScreenAnnotationLink to annotationLinks .
WellAnnotationLink	Well.linkAnnotation(Annotation addition) Adds a ome.model.annotations.WellAnnotationLink to annotationLinks .
void	Plate.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	PlateAcquisition.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Reagent.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Screen.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.
void	Well.unlinkAnnotation(Annotation removal) unlinks all ome.model.annotations.Annotation instances from this instance.

Uses of Annotation in ome.services

Methods in ome.services that return types with arguments of type Annotation

Modifier and Type	Method and Description
Map<String,Annotation>	SearchBean.currentMetadata()
List<Map<String,Annotation>>	SearchBean.currentMetadataList()

Methods in ome.services with parameters of type Annotation

Modifier and Type	Method and Description
void	SearchBean.byAnnotatedWith(Annotation... examples)

Uses of Annotation in ome.services.fulltext.bridges

Methods in ome.services.fulltext.bridges with parameters of type Annotation

Modifier and Type	Method and Description
protected void	TablesBridge.handleAnnotation(Annotation annotation, ome.services.fulltext.bridges.TablesBridge.RowProcessor proc) Detects if the given annotation contains an OMERO.table and if so, passes it off for further processing.

Uses of Annotation in ome.services.graphs

Methods in ome.services.graphs that return types with arguments of type Annotation

Modifier and Type	Method and Description
protected Set<Class<Annotation>>	AnnotationGraphSpec.getTypes(ExtendedMetadata em) Deprecated.

Uses of Annotation in ome.services.search

Constructors in ome.services.search with parameters of type Annotation

Constructor and Description
AnnotatedWith(SearchValues values, Annotation[] annotation, boolean useNamespace, boolean useLike)

Uses of Annotation in ome.services.sharing

Methods in ome.services.sharing that return types with arguments of type Annotation

Modifier and Type	Method and Description
List<Annotation>	ShareBean.getComments(long shareId)

Methods in ome.services.sharing with parameters of type Annotation

Modifier and Type	Method and Description
void	ShareBean.deleteComment(Annotation comment)

Uses of Annotation in ome.tools.hibernate

Methods in ome.tools.hibernate that return types with arguments of type Annotation

Modifier and Type	Method and Description
Set<Class<Annotation>>	ExtendedMetadata.getAnnotationTypes() Returns all the classes which subclass Annotation
Set<Class<Annotation>>	ExtendedMetadata.Impl.getAnnotationTypes()