ome.formats.importer

Class ImportFixture

java.lang.Object

ome.formats.importer.ImportFixture

public class ImportFixture
extends Object

test fixture for importing files without a GUI.

Since:

3.0-M3

Version:

$Revision: 1167 $, $Date: 2006-12-15 10:39:34 +0000 (Fri, 15 Dec 2006) $

Author:

Josh Moore, josh.moore at gmx.de

See Also:

OMEROMetadataStoreClient, ExampleUnitTest

Constructor Summary

Constructors

Constructor and Description
ImportFixture(OMEROMetadataStoreClient store, OMEROWrapper reader)

Method Summary

Methods

Modifier and Type	Method and Description
void	doImport() runs import by looping through all files and then calling: ImportLibrary#open(String) ImportLibrary#calculateImageCount(String) ImportLibrary#importMetadata() ImportLibrary#importData(long, String)
ImportFixture	put(File file, omero.model.Dataset ds)
ImportFixture	putAll(Map<File,omero.model.Dataset> map)
void	setUp() checks for the necessary fields and initializes the ImportLibrary
void	tearDown() sets ImportLibrary, OMEROMetadataStoreClient, and file array to null.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImportFixture

public ImportFixture(OMEROMetadataStoreClient store,
             OMEROWrapper reader)

Method Detail

put

public ImportFixture put(File file,
                omero.model.Dataset ds)

putAll

public ImportFixture putAll(Map<File,omero.model.Dataset> map)

setUp

public void setUp()
           throws Exception

checks for the necessary fields and initializes the ImportLibrary

Throws:

Exception

tearDown

public void tearDown()

sets ImportLibrary, OMEROMetadataStoreClient, and file array to null. Also attempts to call FormatReader.close().

doImport

public void doImport()
              throws Throwable

runs import by looping through all files and then calling:

• ImportLibrary#open(String)
• ImportLibrary#calculateImageCount(String)
• ImportLibrary#importMetadata()
• ImportLibrary#importData(long, String)

Parameters:

step - an action to take per plane. not null.

Throws:

Exception

Throwable