pojos

Class ChannelData

java.lang.Object

pojos.DataObject

pojos.ChannelData

public class ChannelData
extends DataObject

The data that makes up an OME Channel along with links to its logical channel.

Since:

3.0-Beta4

Version:

3.0 (Internal version: $Revision: $Date: $)

Author:

Jean-Marie Burel j.burel@dundee.ac.uk, Donald MacDonald donald@lifesci.dundee.ac.uk

Field Summary

Fields

Modifier and Type	Field and Description
static String	ANNOTATIONS Identifies the Channel.ANNOTATIONLINKS field.

Constructor Summary

Constructors

Constructor and Description
ChannelData(int index) Creates a new instance.
ChannelData(int index, omero.model.Channel channel) Creates a new instance.

Method Summary

Methods

Modifier and Type	Method and Description
String	getChannelLabeling() Returns the label of the channel.
String	getContrastMethod() Returns the contrast method.
omero.model.ContrastMethod	getContrastMethodAsEnum() Returns the contrast method enumeration value.
double	getEmissionWavelength() Deprecated. Replaced by getEmissionWavelength(UnitsLength)
omero.model.Length	getEmissionWavelength(omero.model.enums.UnitsLength unit) Returns the emission wavelength of the channel.
double	getExcitationWavelength() Deprecated. Replaced by getExcitationWavelength(UnitsLength)
omero.model.Length	getExcitationWavelength(omero.model.enums.UnitsLength unit) Returns the excitation wavelength of the channel.
String	getFluor() Returns the Fluorophore used.
double	getGlobalMax() Returns the global maximum of the channel i.e. the maximum of all maxima.
double	getGlobalMin() Returns the global minimum of the channel i.e. the minimum of all minima.
String	getIllumination() Returns the illumination.
omero.model.Illumination	getIlluminationAsEnum() Returns the illumination enumeration value.
int	getIndex() Returns the channel's index.
String	getMode() Returns the mode.
omero.model.AcquisitionMode	getModeAsEnum() Returns the acquisition enumeration value.
String	getName() Returns the name of the channel.
double	getNDFilter() Returns the ND filter wavelength of the channel.
double	getPinholeSize() Deprecated. Replaced by getPinholeSize(UnitsLength)
omero.model.Length	getPinholeSize(omero.model.enums.UnitsLength unit) Returns the pin hole size of the channel.
int	getPockelCell() Returns the Pockel cell settings.
boolean	hasStats() Returns true if the channel has some channel information false otherwise.
void	setContrastMethod(omero.model.ContrastMethod contrastMethod) Sets the contrast method value.
void	setEmissionWavelength(double value) Deprecated. Replaced by setEmissionWavelength(Length)
void	setEmissionWavelength(omero.model.Length value) Sets the emission wavelength.
void	setExcitationWavelength(double value) Deprecated. Replaced by setExcitationWavelength(Length)
void	setExcitationWavelength(omero.model.Length value) Sets the excitation wavelength.
void	setFluor(String value) Sets the fluor.
void	setIllumination(omero.model.Illumination illumination) Sets the illumination value.
void	setMode(omero.model.AcquisitionMode mode) Sets the acquisition mode value.
void	setName(String name) Sets the name of the logical channel.
void	setNDFilter(double value) Sets the ND filter.
void	setPinholeSize(double value) Deprecated. Replaced by setPinholeSize(Length)
void	setPinholeSize(omero.model.Length value) Sets the pinhole size.
void	setPockelCell(int value) Sets the pockel cell.

Methods inherited from class pojos.DataObject

asAnnotation, asChannel, asDataset, asExperimenter, asGroup, asIAnnotated, asImage, asIObject, asPixels, asPlate, asPojo, asPojos, asPojos, asProject, asScreen, asWell, asWellSample, canAnnotate, canDelete, canEdit, canLink, getCreated, getDetails, getGroupId, getId, getOwner, getPermissions, getUpdated, getVersion, isDirty, isLoaded, nullDetails, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, nullSafe, setDirty, setId, setValue, setVersion, timeOfEvent, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ANNOTATIONS

public static final String ANNOTATIONS

Identifies the Channel.ANNOTATIONLINKS field.

See Also:

Constant Field Values

Constructor Detail

ChannelData

public ChannelData(int index)

Creates a new instance.

Parameters:

index - The index of the channel.

ChannelData

public ChannelData(int index,
           omero.model.Channel channel)

Creates a new instance.

Parameters:

index - The index of the channel.

channel - Back pointer to the Channel model object. Mustn't be null.

Throws:

IllegalArgumentException - If the object is null.

Method Detail

getIndex

public int getIndex()

Returns the channel's index.

Returns:

See above.

getChannelLabeling

public String getChannelLabeling()

Returns the label of the channel. Following the specification: Name>Fluor>Emission wavelength>index.

Returns:

See above.

setName

public void setName(String name)

Sets the name of the logical channel.

Parameters:

name - The name of the channel.

getName

public String getName()

Returns the name of the channel.

Returns:

See above.

getEmissionWavelength

public omero.model.Length getEmissionWavelength(omero.model.enums.UnitsLength unit)
                                         throws BigResult

Returns the emission wavelength of the channel. param unit The unit (may be null, in which case no conversion will be performed)

Returns:

See above

Throws:

BigResult - If an arithmetic under-/overflow occurred

getEmissionWavelength

@Deprecated
public double getEmissionWavelength()

Deprecated. Replaced by getEmissionWavelength(UnitsLength)

Returns the emission wavelength of the channel.

Returns:

See above

getExcitationWavelength

public omero.model.Length getExcitationWavelength(omero.model.enums.UnitsLength unit)
                                           throws BigResult

Returns the excitation wavelength of the channel.

Parameters:

unit - The unit (may be null, in which case no conversion will be performed)

Returns:

See above

Throws:

BigResult - If an arithmetic under-/overflow occurred

getExcitationWavelength

@Deprecated
public double getExcitationWavelength()

Deprecated. Replaced by getExcitationWavelength(UnitsLength)

Returns the excitation wavelength of the channel.

Returns:

See above

getPinholeSize

public omero.model.Length getPinholeSize(omero.model.enums.UnitsLength unit)
                                  throws BigResult

Returns the pin hole size of the channel.

Parameters:

unit - The unit (may be null, in which case no conversion will be performed)

Returns:

See above

Throws:

BigResult - If an arithmetic under-/overflow occurred

getPinholeSize

@Deprecated
public double getPinholeSize()

Deprecated. Replaced by getPinholeSize(UnitsLength)

Returns the pin hole size of the channel.

Returns:

See above

getNDFilter

public double getNDFilter()

Returns the ND filter wavelength of the channel.

Returns:

See above

getFluor

public String getFluor()

Returns the Fluorophore used.

Returns:

See above.

getPockelCell

public int getPockelCell()

Returns the Pockel cell settings.

Returns:

See above.

getIllumination

public String getIllumination()

Returns the illumination.

Returns:

See above.

getContrastMethod

public String getContrastMethod()

Returns the contrast method.

Returns:

See above.

getMode

public String getMode()

Returns the mode.

Returns:

See above.

getGlobalMin

public double getGlobalMin()

Returns the global minimum of the channel i.e. the minimum of all minima.

Returns:

See above.

getGlobalMax

public double getGlobalMax()

Returns the global maximum of the channel i.e. the maximum of all maxima.

Returns:

See above.

hasStats

public boolean hasStats()

Returns true if the channel has some channel information false otherwise.

Returns:

See above.

setPinholeSize

public void setPinholeSize(omero.model.Length value)

Sets the pinhole size.

Parameters:

value - The value to set.

setPinholeSize

@Deprecated
public void setPinholeSize(double value)

Deprecated. Replaced by setPinholeSize(Length)

Sets the pinhole size.

Parameters:

value - The value to set.

setNDFilter

public void setNDFilter(double value)

Sets the ND filter.

Parameters:

value - The value to set.

setFluor

public void setFluor(String value)

Sets the fluor.

Parameters:

value - The value to set.

setEmissionWavelength

public void setEmissionWavelength(omero.model.Length value)

Sets the emission wavelength.

Parameters:

value - The value to set.

setEmissionWavelength

@Deprecated
public void setEmissionWavelength(double value)

Deprecated. Replaced by setEmissionWavelength(Length)

Sets the emission wavelength.

Parameters:

value - The value to set.

setExcitationWavelength

public void setExcitationWavelength(omero.model.Length value)

Sets the excitation wavelength.

Parameters:

value - The value to set.

setExcitationWavelength

@Deprecated
public void setExcitationWavelength(double value)

Deprecated. Replaced by setExcitationWavelength(Length)

Sets the excitation wavelength.

Parameters:

value - The value to set.

setPockelCell

public void setPockelCell(int value)

Sets the pockel cell.

Parameters:

value - The value to set.

setIllumination

public void setIllumination(omero.model.Illumination illumination)

Sets the illumination value.

Parameters:

illumination - The value to set.

setMode

public void setMode(omero.model.AcquisitionMode mode)

Sets the acquisition mode value.

Parameters:

mode - The value to set.

setContrastMethod

public void setContrastMethod(omero.model.ContrastMethod contrastMethod)

Sets the contrast method value.

Parameters:

contrastMethod - The value to set.

getModeAsEnum

public omero.model.AcquisitionMode getModeAsEnum()

Returns the acquisition enumeration value.

Returns:

See above.

getIlluminationAsEnum

public omero.model.Illumination getIlluminationAsEnum()

Returns the illumination enumeration value.

Returns:

See above.

getContrastMethodAsEnum

public omero.model.ContrastMethod getContrastMethodAsEnum()

Returns the contrast method enumeration value.

Returns:

See above.