ome.services.delete

Class DeleteBean

java.lang.Object

ome.logic.AbstractLevel2Service

ome.services.delete.DeleteBean

All Implemented Interfaces:

IDelete, ServiceInterface, SelfConfigurableService

@Transactional
public class DeleteBean
extends AbstractLevel2Service
implements IDelete

Strict implementation of the IDelete service interface which will use the SecuritySystem via SecuritySystem.runAsAdmin(AdminAction) to forcibly delete instances.

Since:

3.0-Beta3

Author:

Josh Moore, josh at glencoesoftware.com

See Also:

IDelete

Field Summary

Fields

Modifier and Type	Field and Description
protected LocalAdmin	admin
static String	CHANNELID_QUERY
static String	IMAGE_QUERY Loads an Image graph including: Pixels, Channel, LogicalChannel, StatsInfo, PlaneInfo, Thumbnails, file maps, OriginalFiles, and Settings
static org.slf4j.Logger	log
static String	PLATEIMAGES_QUERY
static String	SETTINGSID_QUERY
protected SessionFactory	sf

Fields inherited from class ome.logic.AbstractLevel2Service

iQuery, iUpdate, metadata, queryFactory, sec

Constructor Summary

Constructors

Constructor and Description
DeleteBean(LocalAdmin admin, SessionFactory sf)

Method Summary

Methods

Modifier and Type	Method and Description
List<IObject>	checkImageDelete(long id, boolean force) Returns all entities which would prevent the given Image id from being deleted.
protected void	collect(ome.services.delete.UnloadedCollector delete, Image i) Walks the Image graph collecting unloaded instances of all entities for later delete.
void	deleteChannels(long imageId)
void	deleteImage(long id, boolean force) Deletes an Image and all related (subordinate) metadata as defined below.
void	deleteImages(Set<Long> ids, boolean force) Deletes several Image instances within a single transaction via the IDelete.deleteImage(long, boolean) method.
void	deleteImagesByDataset(long datasetId, boolean force) Deletes the user-visible Image instances of the given Dataset within a single transaction via the IDelete.deleteImage(long, boolean).
void	deletePlate(long plateId) Deletes all the images contained in a plate as if deleted by: deleteImage(id, true) so that all Dataset and Annotation links are broken, with WellSamples removed first.
void	deleteSettings(long imageId) Deletes all rendering settings for the given Pixel id.
protected void	getImageAndCount(Image[] images, long id, ome.services.delete.UnloadedCollector delete) Uses the locally defined query to load an Image and calls collect(UnloadedCollector, Image) in order to define a list of what will be deleted.
Class<? extends ServiceInterface>	getServiceInterface()
List<IObject>	previewImageDelete(long id, boolean force) This uses IMAGE_QUERY to load all the subordinate metadata of the Image which will be deleted.

Methods inherited from class ome.logic.AbstractLevel2Service

getBeanHelper, getExtendedMetadata, getQueryFactory, getSecuritySystem, selfConfigure, setExtendedMetadata, setQueryFactory, setQueryService, setSecuritySystem, setUpdateService

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

public static final org.slf4j.Logger log

IMAGE_QUERY

public static final String IMAGE_QUERY

Loads an Image graph including: Pixels, Channel, LogicalChannel, StatsInfo, PlaneInfo, Thumbnails, file maps, OriginalFiles, and Settings

See Also:

Constant Field Values

SETTINGSID_QUERY

public static final String SETTINGSID_QUERY

See Also:

Constant Field Values

CHANNELID_QUERY

public static final String CHANNELID_QUERY

See Also:

Constant Field Values

PLATEIMAGES_QUERY

public static final String PLATEIMAGES_QUERY

See Also:

Constant Field Values

admin

protected final LocalAdmin admin

sf

protected final SessionFactory sf

Constructor Detail

DeleteBean

public DeleteBean(LocalAdmin admin,
          SessionFactory sf)

Method Detail

getServiceInterface

public final Class<? extends ServiceInterface> getServiceInterface()

Specified by:

getServiceInterface in interface SelfConfigurableService

checkImageDelete

public List<IObject> checkImageDelete(long id,
                             boolean force)

Description copied from interface: IDelete

Returns all entities which would prevent the given Image id from being deleted. The force boolean determines whether or not the user's collections should be removed in order to facilitate the delete. Currently this only includes datasets. The force boolean determines if Dataset instances from the same user will be considered as constraints. Regardless of force, datasets from other users are considered constraints.

Specified by:

checkImageDelete in interface IDelete

Parameters:

id - of the Image to be deleted.

force - return value will be included

Returns:

unloaded entity list

previewImageDelete

public List<IObject> previewImageDelete(long id,
                               boolean force)

This uses IMAGE_QUERY to load all the subordinate metadata of the Image which will be deleted.

Specified by:

previewImageDelete in interface IDelete

Returns:

unloaded entity list

deleteImage

public void deleteImage(long id,
               boolean force)
                 throws SecurityViolation,
                        ValidationException

Description copied from interface: IDelete

Deletes an Image and all related (subordinate) metadata as defined below. This method calls IDelete.checkImageDelete(long, boolean) and throws a ConstraintViolation exception with the results of that call are not empty; then it forcibly deletes all objects returned by IDelete.previewImageDelete(long, boolean)

The deleted metadata includes all of the following types which belong to the current user:

• Pixels
• PixelsDimensions
• PlaneInfo
• RenderingDef
• OriginalFile
• ImageAnnotationLink

If any of these types do not belong to the current user, the Image data graph will be considered corrupted and a ValidationException will be thrown.

For the types:

• Thumbnail

a forced deletion will take place even if the user information does not match the current user.

If the Image is not owned by the current user, then SecurityViolation is thrown, unless the user is root or the group leader.

An image will not be deleted if it is contained in a Dataset owned by another user. If the Image is contained in other datasets belonging to the same user, then the force parameter decides what will happen. A force value of true implies that the Image will be removed as well as the related links. The Pixels.getRelatedTo() field will be set to null for all Pixels pointing to a Pixels instance which is about to be deleted.

Specified by:

deleteImage in interface IDelete

Parameters:

id - id of the Image to be deleted

force - Image will be removed even if contained in other datasets. If false, a ConstraintViolation will be raised.

Throws:

SecurityViolation - If the Image does not belong to the current user.

ValidationException - throws an exception if there is any unexpected object which prevents this object from being deleted, i.e. not in IDelete.checkImageDelete(long, boolean) (check first)

deleteImages

public void deleteImages(Set<Long> ids,
                boolean force)
                  throws SecurityViolation,
                         ValidationException,
                         ApiUsageException

Description copied from interface: IDelete

Deletes several Image instances within a single transaction via the IDelete.deleteImage(long, boolean) method.

Specified by:

deleteImages in interface IDelete

force - As IDelete.deleteImage(long, boolean)

Throws:

SecurityViolation - As IDelete.deleteImage(long, boolean)

ValidationException - As IDelete.deleteImage(long, boolean)

ApiUsageException - As IDelete.deleteImage(long, boolean)

deleteImagesByDataset

public void deleteImagesByDataset(long datasetId,
                         boolean force)
                           throws SecurityViolation,
                                  ValidationException,
                                  ApiUsageException

Description copied from interface: IDelete

Deletes the user-visible Image instances of the given Dataset within a single transaction via the IDelete.deleteImage(long, boolean). In addition, before Image deletion is attempted, the links to the given Dataset are first removed, otherwise this method would always require a "force" argument of true.

Specified by:

deleteImagesByDataset in interface IDelete

force - As IDelete.deleteImage(long, boolean)

Throws:

ValidationException - As IDelete.deleteImage(long, boolean)

ApiUsageException - As IDelete.deleteImage(long, boolean)

SecurityViolation

deleteSettings

public void deleteSettings(long imageId)

Description copied from interface: IDelete

Deletes all rendering settings for the given Pixel id. This removes all the same objects that deleteImage() would delete below the given Pixels

Specified by:

deleteSettings in interface IDelete

deleteChannels

public void deleteChannels(long imageId)

deletePlate

public void deletePlate(long plateId)

Description copied from interface: IDelete

Deletes all the images contained in a plate as if deleted by: deleteImage(id, true) so that all Dataset and Annotation links are broken, with WellSamples removed first. Then all Wells in the Plate and the Plate itself are removed. WellAnnotationLinks, and PlateAnnotationLinks are deleted as necessary.

Specified by:

deletePlate in interface IDelete

getImageAndCount

protected void getImageAndCount(Image[] images,
                    long id,
                    ome.services.delete.UnloadedCollector delete)

Uses the locally defined query to load an Image and calls collect(UnloadedCollector, Image) in order to define a list of what will be deleted. This method fulfills the previewImageDelete(long, boolean) contract and as such is used by deleteImage(long, boolean) in order to fulfill its contract.

collect

protected void collect(ome.services.delete.UnloadedCollector delete,
           Image i)

Walks the Image graph collecting unloaded instances of all entities for later delete.