Serialized Form

Package loci.formats

Exception Class loci.formats.FormatException

class FormatException extends Exception implements Serializable

Exception Class loci.formats.IllegalBlockException

class IllegalBlockException extends IllegalArgumentException implements Serializable

Exception Class loci.formats.MissingLibraryException

class MissingLibraryException extends FormatException implements Serializable

Exception Class loci.formats.UnknownFormatException

class UnknownFormatException extends FormatException implements Serializable

Exception Class loci.formats.UnsupportedCompressionException

class UnsupportedCompressionException extends FormatException implements Serializable

Package loci.formats.cache

Exception Class loci.formats.cache.CacheException

class CacheException extends FormatException implements Serializable

Package loci.formats.gui

Class loci.formats.gui.CacheComponent

class CacheComponent extends JPanel implements Serializable

Serialized Fields

cache

Cache cache

The cache that this component controls.

id

String id

File name that the cache is working with (debugging only).

lengths

int[] lengths

Length of each dimensional axis, obtained from cache strategy.

order

JComboBox[] order

Combo boxes for choosing planar ordering.

priority

JComboBox[] priority

Combo boxes for choosing axis priority.

range

JSpinner[] range

Spinners for choosing range of slices to cache.

sourceChooser

JComboBox sourceChooser

Combo box for choosing cache source.

strategyChooser

JComboBox strategyChooser

Combo box for choosing cache strategy.

Class loci.formats.gui.CacheIndicator

class CacheIndicator extends JComponent implements Serializable

Serialized Fields

axis

int axis

cache

Cache cache

comp

Component comp

lPad

int lPad

rPad

int rPad

Class loci.formats.gui.DataConverter

class DataConverter extends JFrame implements Serializable

Serialized Fields

biReader

BufferedImageReader biReader

biWriter

BufferedImageWriter biWriter

cChoice

JComboBox cChoice

cLabel

JLabel cLabel

codec

JComboBox codec

convert

JButton convert

force

boolean force

forceType

JCheckBox forceType

fps

JSpinner fps

includeC

JCheckBox includeC

includeT

JCheckBox includeT

includeZ

JCheckBox includeZ

input

JTextField input

output

JTextField output

progress

JProgressBar progress

rc

JFileChooser rc

reader

FileStitcher reader

series

JSpinner series

seriesRow

JPanel seriesRow

shutdown

boolean shutdown

swap

DimensionSwapper swap

tChoice

JComboBox tChoice

tLabel

JLabel tLabel

wc

JFileChooser wc

writer

ImageWriter writer

zChoice

JComboBox zChoice

zLabel

JLabel zLabel

Class loci.formats.gui.ImageViewer

class ImageViewer extends JFrame implements Serializable

Serialized Fields

anim

boolean anim

canCloseReader

boolean canCloseReader

cSlider

JSlider cSlider

filename

String filename

fileReader

IFormatReader fileReader

Reader for files on disk.

fileSave

JMenuItem fileSave

fileView

JMenuItem fileView

fileWriter

IFormatWriter fileWriter

Writer for files on disk.

fps

int fps

icon

ImageIcon icon

iconLabel

JLabel iconLabel

images

BufferedImage[] images

in

IFormatReader in

myReader

BufferedImageReader myReader

Current format reader.

myWriter

BufferedImageWriter myWriter

Current format writer.

nSlider

JSlider nSlider

omeMeta

MetadataStore omeMeta

Attached OME metadata store, if available.

omexmlService

OMEXMLService omexmlService

Service for working with OME-XML metadata.

pane

JPanel pane

probeLabel

JLabel probeLabel

sb

StringBuilder sb

sizeC

int sizeC

sizeT

int sizeT

sizeZ

int sizeZ

sliderPanel

JPanel sliderPanel

tSlider

JSlider tSlider

zSlider

JSlider zSlider

Class loci.formats.gui.PreviewPane

class PreviewPane extends JPanel implements Serializable

Serialized Fields

formatLabel

JLabel formatLabel

Labels containing thumbnail and dimensional information.

formatText

String formatText

formatTip

String formatTip

icon

ImageIcon icon

iconLabel

JLabel iconLabel

Labels containing thumbnail and dimensional information.

iconText

String iconText

iconTip

String iconTip

lastId

String lastId

Last ID loaded.

loader

Thread loader

Thumbnail loading thread.

loaderAlive

boolean loaderAlive

Flag indicating whether loader thread should keep running.

loadId

String loadId

Current ID to load.

reader

BufferedImageReader reader

Reader for use when loading thumbnails.

refresher

Runnable refresher

Method for syncing the view to the model.

resLabel

JLabel resLabel

Labels containing thumbnail and dimensional information.

resText

String resText

resTip

String resTip

typeLabel

JLabel typeLabel

Labels containing thumbnail and dimensional information.

typeText

String typeText

typeTip

String typeTip

zctLabel

JLabel zctLabel

Labels containing thumbnail and dimensional information.

zctText

String zctText

zctTip

String zctTip

Class loci.formats.gui.TwoChannelColorSpace

class TwoChannelColorSpace extends ColorSpace implements Serializable

Class loci.formats.gui.XMLCellRenderer

class XMLCellRenderer extends DefaultTreeCellRenderer implements Serializable

Class loci.formats.gui.XMLWindow

class XMLWindow extends JFrame implements Serializable

Serialized Fields

doc

Document doc

Package loci.formats.in

Class loci.formats.in.PrairieMetadata.ValueTable

class ValueTable extends HashMap<String,PrairieMetadata.Value> implements Serializable

Package loci.formats.tiff

Class loci.formats.tiff.IFD

class IFD extends HashMap<Integer,Object> implements Serializable

Class loci.formats.tiff.IFDList

class IFDList extends ArrayList<IFD> implements Serializable

Class loci.formats.tiff.TiffRational

class TiffRational extends Number implements Serializable

Serialized Fields

denom

long denom

Components of the rational's fractional representation.

numer

long numer

Components of the rational's fractional representation.

Package loci.formats.tools

Class loci.formats.tools.EditTiffG

class EditTiffG extends JFrame implements Serializable

Serialized Fields

file

File file

fileBox

JFileChooser fileBox

textArea

JTextArea textArea

Package loci.plugins.config

Class loci.plugins.config.ConfigWindow

class ConfigWindow extends JFrame implements Serializable

Serialized Fields

enabledBox

JCheckBox enabledBox

extensions

JTextField extensions

formatInfo

JPanel formatInfo

formatsList

JList formatsList

formatsListModel

DefaultListModel formatsListModel

installButton

JButton installButton

libsList

JList libsList

libsListModel

DefaultListModel libsListModel

license

JTextField license

log

PrintWriter log

notes

JTextArea notes

path

JTextField path

resetSliceLabelButton

JButton resetSliceLabelButton

setSliceLabelButton

JButton setSliceLabelButton

sliceLabel

JTextField sliceLabel

status

JTextField status

type

JTextField type

upgradeBox

JCheckBox upgradeBox

url

JTextField url

version

JTextField version

windowlessBox

JCheckBox windowlessBox

Class loci.plugins.config.InstallWizard

class InstallWizard extends JFrame implements Serializable

Package loci.plugins.in

Class loci.plugins.in.ImporterMetadata

class ImporterMetadata extends HashMap<String,Object> implements Serializable

Package loci.plugins.shortcut

Class loci.plugins.shortcut.ShortcutPanel

class ShortcutPanel extends JPanel implements Serializable

Class loci.plugins.shortcut.ShortcutTransferHandler

class ShortcutTransferHandler extends TransferHandler implements Serializable

Serialized Fields

shortcutPanel

ShortcutPanel shortcutPanel

Associated shortcut panel.

Package loci.plugins.util

Class loci.plugins.util.BrowserOptionsWindow

class BrowserOptionsWindow extends JFrame implements Serializable

Class loci.plugins.util.DataBrowser

class DataBrowser extends ij.gui.StackWindow implements Serializable

Serialized Fields

allowShow

boolean allowShow

anim

boolean anim

animate

Button animate

cIndex

int[] cIndex

cLengths

int[] cLengths

cScroll

Scrollbar cScroll

cSliders

Scrollbar[] cSliders

fpsSpin

JSpinner fpsSpin

metadata

Button metadata

metaWindow

XMLWindow metaWindow

options

Button options

optionsWindow

BrowserOptionsWindow optionsWindow

tScroll

Scrollbar tScroll

xml

String xml

zScroll

Scrollbar zScroll

Class loci.plugins.util.SearchableWindow

class SearchableWindow extends ij.text.TextWindow implements Serializable

Serialized Fields

index

int index

panel

ij.text.TextPanel panel

Package org.libjpegturbo.turbojpeg

Class org.libjpegturbo.turbojpeg.TJTransform

class TJTransform extends Rectangle implements Serializable

serialVersionUID:

-127367705761430371L

Serialized Fields

cf

TJCustomFilter cf

Custom filter instance

op

int op

Transform operation (one of OP_*)

options

int options

Transform options (bitwise OR of one or more of OPT_*)