Uses of Class
loci.formats.tiff.IFD

Packages that use IFD
Package
Description
loci.formats.in
Package containing Bio-Formats file format readers.
loci.formats.out
Package containing Bio-Formats file format writers.
loci.formats.tiff
Package containing Bio-Formats TIFF code of general utility.

  • Uses of IFD in loci.formats.in

    Fields in loci.formats.in declared as IFD
    Modifier and Type
    Field
    Description
    protected IFD
    DNGReader.original
    The original IFD.
    protected IFD
    NikonReader.original
    The original IFD.
    Methods in loci.formats.in that return IFD
    Modifier and Type
    Method
    Description
    private static IFD
    OMETiffReader.getFirstIFD(String fname)
     
    protected IFD
    SVSReader.getIFD(int no)
    Get the IFD corresponding to the given plane in the current series.
    private IFD
    VentanaReader.splitIFD(IFD ifd, int no)
    Take the real IFD on disk and reshape it into something that represents only the given plane.
    Methods in loci.formats.in with parameters of type IFD
    Modifier and Type
    Method
    Description
    protected byte[]
    MinimalTiffReader.copyTile(IFD ifd, byte[] buf, int x, int y)
     
    protected long
    MinimalTiffReader.getCompressedByteCount(IFD ifd, int x, int y)
     
    private loci.common.RandomAccessInputStream
    ZeissLSMReader.getCZTag(IFD ifd)
     
    private long[]
    NDPIReader.getMarkers(IFD ifd)
    Get the array of restart markers (offsets) for the given IFD.
    private String
    BaseTiffReader.getResolutionUnitFromComment(IFD ifd)
    Extracts the resolution unit symbol from the comment field
    protected int
    MinimalTiffReader.getTileIndex(IFD ifd, int x, int y)
    Get the index of the tile corresponding to given IFD (plane) and tile XY indexes.
    private byte[]
    FlowSightReader.openBitmaskBytes(IFD ifd, int imageWidth, int imageHeight)
    Decode the whole IFD plane using bitmask compression
    private byte[]
    FlowSightReader.openGreyscaleBytes(IFD ifd, int imageWidth, int imageHeight)
    Decode the whole IFD plane using greyscale compression
    protected void
    BaseTiffReader.put(String key, IFD ifd, int tag)
     
    protected void
    BaseTiffReader.putDouble(String key, IFD ifd, int tag)
     
    protected void
    BaseTiffReader.putInt(String key, IFD ifd, int tag)
     
    protected void
    BaseTiffReader.putString(String key, IFD ifd, int tag)
     
    private void
    NDPIReader.resetStream(IFD ifd)
     
    protected void
    MinimalTiffReader.setResolutionLevel(IFD ifd)
    Sets the resolution level when we have JPEG 2000 compressed data.
    private IFD
    VentanaReader.splitIFD(IFD ifd, int no)
    Take the real IFD on disk and reshape it into something that represents only the given plane.
    private boolean
    NDPIReader.useTiffParser(IFD ifd)
     

  • Uses of IFD in loci.formats.out

    Fields in loci.formats.out declared as IFD
    Modifier and Type
    Field
    Description
    private IFD[][]
    DicomWriter.ifds
     
    Methods in loci.formats.out that return IFD
    Modifier and Type
    Method
    Description
    protected IFD
    PyramidOMETiffWriter.makeIFD()
     
    protected IFD
    TiffWriter.makeIFD()
     
    Methods in loci.formats.out with parameters of type IFD
    Modifier and Type
    Method
    Description
    private void
    TiffWriter.formatCompression(IFD ifd)
    Sets the compression code for the specified IFD.
    protected int
    TiffWriter.prepareToWriteImage(int no, byte[] buf, IFD ifd, int x, int y, int w, int h)
    Performs the preparation for work prior to the usage of the TIFF saver.
    void
    OMETiffWriter.saveBytes(int no, byte[] buf, IFD ifd, int x, int y, int w, int h)
     
    void
    PyramidOMETiffWriter.saveBytes(int no, byte[] buf, IFD ifd, int x, int y, int w, int h)
     
    void
    TiffWriter.saveBytes(int no, byte[] buf, IFD ifd)
    Saves the given image to the specified (possibly already open) file.
    void
    TiffWriter.saveBytes(int no, byte[] buf, IFD ifd, int x, int y, int w, int h)
    Saves the given image to the specified series in the current file.

  • Uses of IFD in loci.formats.tiff

    Fields in loci.formats.tiff declared as IFD
    Modifier and Type
    Field
    Description
    private IFD
    TiffParser.firstIFD
    Cached first IFD in the current file.
    Methods in loci.formats.tiff that return IFD
    Modifier and Type
    Method
    Description
    IFD
    TiffParser.getFirstIFD()
    Gets the first IFD within the TIFF file, or null if the input source is not a valid TIFF file.
    IFD
    TiffParser.getIFD(long offset)
    Gets the IFD stored at the given offset.
    Methods in loci.formats.tiff with parameters of type IFD
    Modifier and Type
    Method
    Description
    static void
    TiffCompression.difference(byte[] input, IFD ifd)
    Performs in-place differencing according to the given predictor value.
    void
    TiffParser.fillInIFD(IFD ifd)
    Fill in IFD entries that are stored at an arbitrary offset.
    int[]
    TiffParser.getColorMap(IFD ifd)
    Retrieve the color map associated with the given IFD.
    CodecOptions
    TiffCompression.getCompressionCodecOptions(IFD ifd)
    Creates a set of codec options for compression.
    CodecOptions
    TiffCompression.getCompressionCodecOptions(IFD ifd, CodecOptions opt)
    Creates a set of codec options for compression.
    byte[]
    TiffParser.getSamples(IFD ifd, byte[] buf)
     
    byte[]
    TiffParser.getSamples(IFD ifd, byte[] buf, int x, int y, long width, long height)
     
    byte[]
    TiffParser.getSamples(IFD ifd, byte[] buf, int x, int y, long width, long height, int overlapX, int overlapY)
     
    IFDList
    TiffParser.getSubIFDs(IFD ifd)
    Returns the SUBIFDS belonging to a given IFD.
    byte[]
    TiffParser.getTile(IFD ifd, byte[] buf, int row, int col)
     
    void
    TiffSaver.makeValidIFD(IFD ifd, int pixelType, int nChannels)
    Makes a valid IFD.
    static void
    TiffCompression.undifference(byte[] input, IFD ifd)
    Undoes in-place differencing according to the given predictor value.
    static void
    TiffParser.unpackBytes(byte[] samples, int startIndex, byte[] bytes, IFD ifd)
    Extracts pixel information from the given byte array according to the bits per sample, photometric interpretation and color map IFD directory entry values, and the specified byte ordering.
    void
    TiffSaver.writeIFD(IFD ifd, long nextOffset)
    Write the given IFD to the open stream.
    void
    TiffSaver.writeIFD(IFD ifd, long nextOffset, boolean calculateOffset)
    Write the given IFD to the open stream.
    private void
    TiffSaver.writeIFDStrips(IFD ifd, int no, byte[][] strips, int nChannels, boolean last, int x, int y, long defaultByteCount)
     
    void
    TiffSaver.writeImage(byte[] buf, IFD ifd, int no, int pixelType, boolean last)
     
    void
    TiffSaver.writeImage(byte[] buf, IFD ifd, int no, int pixelType, int x, int y, int w, int h, boolean last)
    Writes to any rectangle from the passed block.
    void
    TiffSaver.writeImage(byte[] buf, IFD ifd, int no, int pixelType, int x, int y, int w, int h, boolean last, Integer nChannels, boolean copyDirectly)
     
    void
    TiffSaver.writeImageIFD(IFD ifd, int no, byte[][] strips, int nChannels, boolean last, int x, int y)
    Performs the actual work of dealing with IFD data and writing it to the TIFF for a given image or sub-image.
    Constructors in loci.formats.tiff with parameters of type IFD
    Modifier
    Constructor
    Description
     
    IFD(IFD ifd)