Uses of Interface
loci.formats.ome.OMEXMLMetadata

Packages that use OMEXMLMetadata

Package	Description
loci.formats.in	Package containing Bio-Formats file format readers.
loci.formats.meta	Package containing core Bio-Formats metadata interfaces for the OME data model.
loci.formats.ome	Package containing Bio-Formats OME-related logic for OME-XML metadata, and database import, upload and download.
loci.formats.out	Package containing Bio-Formats file format writers.
loci.formats.services

Uses of OMEXMLMetadata in loci.formats.in

Fields in loci.formats.in declared as OMEXMLMetadata

Modifier and Type	Field	Description
protected OMEXMLMetadata	OMETiffReader.meta	Represents OME-XML stored in the current OME-TIFF file(s).
private OMEXMLMetadata	OBFReader.ome_meta_data
private OMEXMLMetadata	FakeReader.omeXmlMetadata

Methods in loci.formats.in that return OMEXMLMetadata

Modifier and Type	Method	Description
OMEXMLMetadata	FakeReader.getOmeXmlMetadata()

Methods in loci.formats.in with parameters of type OMEXMLMetadata

Modifier and Type	Method	Description
protected void	OMETiffReader.convertMetadata(OMEXMLMetadata meta, MetadataStore store)	Convert metadata contained within an OMEXMLMetadata object to a separate MetadataStore.

Uses of OMEXMLMetadata in loci.formats.meta

Methods in loci.formats.meta with parameters of type OMEXMLMetadata

Modifier and Type	Method	Description
void	ModuloAnnotation.setModulo(OMEXMLMetadata meta, Modulo m)	Set the value of this annotation using the given Modulo object

Uses of OMEXMLMetadata in loci.formats.ome

Classes in loci.formats.ome that implement OMEXMLMetadata

Modifier and Type	Class	Description
class	AbstractOMEXMLMetadata
class	OMEPyramidStore	Extension of OMEXMLMetadataImpl that allows for pyramid resolution storage and retrieval.
class	OMEXMLMetadataImpl

Uses of OMEXMLMetadata in loci.formats.out

Fields in loci.formats.out declared as OMEXMLMetadata

Modifier and Type	Field	Description
private OMEXMLMetadata	OMETiffWriter.omeMeta

Methods in loci.formats.out with parameters of type OMEXMLMetadata

Modifier and Type	Method	Description
private void	OMETiffWriter.populateImage(OMEXMLMetadata omeMeta, int series)
private void	OMETiffWriter.populateTiffData(OMEXMLMetadata omeMeta, int[] zct, int ifd, int series, int plane)

Uses of OMEXMLMetadata in loci.formats.services

Methods in loci.formats.services that return OMEXMLMetadata

Modifier and Type	Method	Description
OMEXMLMetadata	OMEXMLService.createOMEXMLMetadata()	Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package.
OMEXMLMetadata	OMEXMLService.createOMEXMLMetadata(String xml)	Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.
OMEXMLMetadata	OMEXMLService.createOMEXMLMetadata(String xml, String version)	Creates an OME-XML metadata object using reflection, to avoid direct dependencies on the optional loci.formats.ome package, wrapping a DOM representation of the given OME-XML string.
OMEXMLMetadata	OMEXMLServiceImpl.createOMEXMLMetadata()
OMEXMLMetadata	OMEXMLServiceImpl.createOMEXMLMetadata(String xml)
OMEXMLMetadata	OMEXMLServiceImpl.createOMEXMLMetadata(String xml, String version)
OMEXMLMetadata	OMEXMLService.getOMEMetadata(MetadataRetrieve src)	Returns a OMEXMLMetadata object with the same contents as the given MetadataRetrieve, converting it if necessary.
OMEXMLMetadata	OMEXMLServiceImpl.getOMEMetadata(MetadataRetrieve src)

Methods in loci.formats.services with parameters of type OMEXMLMetadata

Modifier and Type	Method	Description
void	OMEXMLService.addMetadataOnly(OMEXMLMetadata omexmlMeta, int image)	Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.
void	OMEXMLService.addMetadataOnly(OMEXMLMetadata omexmlMeta, int image, boolean resolve)	Insert a MetadataOnly element under the Image specified by 'index' in the given OME-XML metadata object.
void	OMEXMLServiceImpl.addMetadataOnly(OMEXMLMetadata omexmlMeta, int image)
void	OMEXMLServiceImpl.addMetadataOnly(OMEXMLMetadata omexmlMeta, int image, boolean resolve)
void	OMEXMLService.addModuloAlong(OMEXMLMetadata omexmlMeta, CoreMetadata core, int image)	Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.
void	OMEXMLServiceImpl.addModuloAlong(OMEXMLMetadata meta, CoreMetadata core, int imageIdx)
private void	OMEXMLServiceImpl.createModulo(OMEXMLMetadata meta, Modulo modulo, ome.xml.model.StructuredAnnotations annotations, ome.xml.model.Image image, int imageIdx, int annotationIndex, int imageAnnotation)	Create a ModuloAlong* annotation corresponding to the given Modulo.
private Modulo	OMEXMLServiceImpl.getModuloAlong(OMEXMLMetadata omexml, String tag, int image)	Create a Modulo corresponding to the given ModuloAlong* tag.
Modulo	OMEXMLService.getModuloAlongC(OMEXMLMetadata omexmlMeta, int image)	Retrieve the ModuloAlongC annotation in the given Image in the given OME-XML metadata object.
Modulo	OMEXMLServiceImpl.getModuloAlongC(OMEXMLMetadata omexml, int image)
Modulo	OMEXMLService.getModuloAlongT(OMEXMLMetadata omexmlMeta, int image)	Retrieve the ModuloAlongT annotation in the given Image in the given OME-XML metadata object.
Modulo	OMEXMLServiceImpl.getModuloAlongT(OMEXMLMetadata omexml, int image)
Modulo	OMEXMLService.getModuloAlongZ(OMEXMLMetadata omexmlMeta, int image)	Retrieve the ModuloAlongZ annotation in the given Image in the given OME-XML metadata object.
Modulo	OMEXMLServiceImpl.getModuloAlongZ(OMEXMLMetadata omexml, int image)
Hashtable	OMEXMLService.getOriginalMetadata(OMEXMLMetadata omexmlMeta)	Parse any OriginalMetadata annotations from the given OME-XML metadata object and store them in a Hashtable.
Hashtable	OMEXMLServiceImpl.getOriginalMetadata(OMEXMLMetadata omexmlMeta)
boolean	OMEXMLService.isEqual(OMEXMLMetadata src1, OMEXMLMetadata src2)	Determine whether or not two OMEXMLMetadata objects are equal.
boolean	OMEXMLServiceImpl.isEqual(OMEXMLMetadata src1, OMEXMLMetadata src2)
void	OMEXMLService.populateOriginalMetadata(OMEXMLMetadata omexmlMeta, String key, String value)	Adds the specified key/value pair as a new OriginalMetadata node to the given OME-XML metadata object.
void	OMEXMLService.populateOriginalMetadata(OMEXMLMetadata omexmlMeta, Hashtable<String,Object> metadata)	Adds the key/value pairs in the specified Hashtable as new OriginalMetadata annotations in the given OME-XML metadata object.
void	OMEXMLServiceImpl.populateOriginalMetadata(OMEXMLMetadata omexmlMeta, String key, String value)
void	OMEXMLServiceImpl.populateOriginalMetadata(OMEXMLMetadata omexmlMeta, Hashtable<String,Object> metadata)
void	OMEXMLService.removeBinData(OMEXMLMetadata omexmlMeta)	Remove all of the BinData elements from the given OME-XML metadata object.
void	OMEXMLServiceImpl.removeBinData(OMEXMLMetadata omexmlMeta)
void	OMEXMLService.removeChannels(OMEXMLMetadata omexmlMeta, int image, int sizeC)	Remove all but the first sizeC valid Channel elements from the given OME-XML metadata object.
void	OMEXMLServiceImpl.removeChannels(OMEXMLMetadata omexmlMeta, int image, int sizeC)
void	OMEXMLService.removeTiffData(OMEXMLMetadata omexmlMeta)	Remove all of the TiffData elements from the given OME-XML metadata object.
void	OMEXMLServiceImpl.removeTiffData(OMEXMLMetadata omexmlMeta)