Serialized Form (Bio-Formats API)

Package loci.formats
- Class loci.formats.FormatException extends java.lang.Exception implements Serializable
- Class loci.formats.IllegalBlockException extends java.lang.IllegalArgumentException implements Serializable
- Class loci.formats.MissingLibraryException extends FormatException implements Serializable
- Class loci.formats.UnknownFormatException extends FormatException implements Serializable
- Class loci.formats.UnsupportedCompressionException extends FormatException implements Serializable
Package loci.formats.cache
- Class loci.formats.cache.CacheException extends FormatException implements Serializable
Package loci.formats.gui
- Class loci.formats.gui.CacheComponent extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - cache
```
Cache cache
```
      The cache that this component controls.
    - sourceChooser
```
javax.swing.JComboBox<E> sourceChooser
```
      Combo box for choosing cache source.
    - strategyChooser
```
javax.swing.JComboBox<E> strategyChooser
```
      Combo box for choosing cache strategy.
    - range
```
javax.swing.JSpinner[] range
```
      Spinners for choosing range of slices to cache.
    - priority
```
javax.swing.JComboBox<E>[] priority
```
      Combo boxes for choosing axis priority.
    - order
```
javax.swing.JComboBox<E>[] order
```
      Combo boxes for choosing planar ordering.
    - id
```
java.lang.String id
```
      File name that the cache is working with (debugging only).
    - lengths
```
int[] lengths
```
      Length of each dimensional axis, obtained from cache strategy.
- Class loci.formats.gui.CacheIndicator extends javax.swing.JComponent implements Serializable
  - Serialized Fields
    - cache
```
Cache cache
```
    - axis
```
int axis
```
    - comp
```
java.awt.Component comp
```
    - lPad
```
int lPad
```
    - rPad
```
int rPad
```
- Class loci.formats.gui.DataConverter extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - reader
```
FileStitcher reader
```
    - swap
```
DimensionSwapper swap
```
    - biReader
```
BufferedImageReader biReader
```
    - writer
```
ImageWriter writer
```
    - biWriter
```
BufferedImageWriter biWriter
```
    - rc
```
javax.swing.JFileChooser rc
```
    - wc
```
javax.swing.JFileChooser wc
```
    - shutdown
```
boolean shutdown
```
    - force
```
boolean force
```
    - input
```
javax.swing.JTextField input
```
    - output
```
javax.swing.JTextField output
```
    - forceType
```
javax.swing.JCheckBox forceType
```
    - includeZ
```
javax.swing.JCheckBox includeZ
```
    - includeT
```
javax.swing.JCheckBox includeT
```
    - includeC
```
javax.swing.JCheckBox includeC
```
    - zLabel
```
javax.swing.JLabel zLabel
```
    - tLabel
```
javax.swing.JLabel tLabel
```
    - cLabel
```
javax.swing.JLabel cLabel
```
    - zChoice
```
javax.swing.JComboBox<E> zChoice
```
    - tChoice
```
javax.swing.JComboBox<E> tChoice
```
    - cChoice
```
javax.swing.JComboBox<E> cChoice
```
    - codec
```
javax.swing.JComboBox<E> codec
```
    - fps
```
javax.swing.JSpinner fps
```
    - series
```
javax.swing.JSpinner series
```
    - seriesRow
```
javax.swing.JPanel seriesRow
```
    - progress
```
javax.swing.JProgressBar progress
```
    - convert
```
javax.swing.JButton convert
```
- Class loci.formats.gui.ImageViewer extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - pane
```
javax.swing.JPanel pane
```
    - icon
```
javax.swing.ImageIcon icon
```
    - iconLabel
```
javax.swing.JLabel iconLabel
```
    - sliderPanel
```
javax.swing.JPanel sliderPanel
```
    - nSlider
```
javax.swing.JSlider nSlider
```
    - zSlider
```
javax.swing.JSlider zSlider
```
    - tSlider
```
javax.swing.JSlider tSlider
```
    - cSlider
```
javax.swing.JSlider cSlider
```
    - probeLabel
```
javax.swing.JLabel probeLabel
```
    - fileView
```
javax.swing.JMenuItem fileView
```
    - fileSave
```
javax.swing.JMenuItem fileSave
```
    - omeMeta
```
MetadataStore omeMeta
```
      Attached OME metadata store, if available.
    - myReader
```
BufferedImageReader myReader
```
      Current format reader.
    - myWriter
```
BufferedImageWriter myWriter
```
      Current format writer.
    - fileReader
```
IFormatReader fileReader
```
      Reader for files on disk.
    - fileWriter
```
IFormatWriter fileWriter
```
      Writer for files on disk.
    - filename
```
java.lang.String filename
```
    - in
```
IFormatReader in
```
    - images
```
java.awt.image.BufferedImage[] images
```
    - sizeZ
```
int sizeZ
```
    - sizeT
```
int sizeT
```
    - sizeC
```
int sizeC
```
    - anim
```
boolean anim
```
    - fps
```
int fps
```
    - canCloseReader
```
boolean canCloseReader
```
    - omexmlService
```
OMEXMLService omexmlService
```
      Service for working with OME-XML metadata.
    - sb
```
java.lang.StringBuilder sb
```
- Class loci.formats.gui.PreviewPane extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - reader
```
BufferedImageReader reader
```
      Reader for use when loading thumbnails.
    - loadId
```
java.lang.String loadId
```
      Current ID to load.
    - lastId
```
java.lang.String lastId
```
      Last ID loaded.
    - loader
```
java.lang.Thread loader
```
      Thumbnail loading thread.
    - loaderAlive
```
boolean loaderAlive
```
      Flag indicating whether loader thread should keep running.
    - refresher
```
java.lang.Runnable refresher
```
      Method for syncing the view to the model.
    - iconLabel
```
javax.swing.JLabel iconLabel
```
      Labels containing thumbnail and dimensional information.
    - formatLabel
```
javax.swing.JLabel formatLabel
```
      Labels containing thumbnail and dimensional information.
    - resLabel
```
javax.swing.JLabel resLabel
```
      Labels containing thumbnail and dimensional information.
    - zctLabel
```
javax.swing.JLabel zctLabel
```
      Labels containing thumbnail and dimensional information.
    - typeLabel
```
javax.swing.JLabel typeLabel
```
      Labels containing thumbnail and dimensional information.
    - icon
```
javax.swing.ImageIcon icon
```
    - iconText
```
java.lang.String iconText
```
    - formatText
```
java.lang.String formatText
```
    - resText
```
java.lang.String resText
```
    - zctText
```
java.lang.String zctText
```
    - typeText
```
java.lang.String typeText
```
    - iconTip
```
java.lang.String iconTip
```
    - formatTip
```
java.lang.String formatTip
```
    - resTip
```
java.lang.String resTip
```
    - zctTip
```
java.lang.String zctTip
```
    - typeTip
```
java.lang.String typeTip
```
- Class loci.formats.gui.TwoChannelColorSpace extends java.awt.color.ColorSpace implements Serializable
- Class loci.formats.gui.XMLCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable
- Class loci.formats.gui.XMLWindow extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - doc
```
org.w3c.dom.Document doc
```
Package loci.formats.in
- Class loci.formats.in.PrairieMetadata.ValueTable extends java.util.HashMap<java.lang.String,PrairieMetadata.Value> implements Serializable
Package loci.formats.tiff
- Class loci.formats.tiff.IFD extends java.util.HashMap<java.lang.Integer,java.lang.Object> implements Serializable
- Class loci.formats.tiff.IFDList extends java.util.ArrayList<IFD> implements Serializable
- Class loci.formats.tiff.TiffRational extends java.lang.Number implements Serializable
  - Serialized Fields
    - numer
```
long numer
```
      Components of the rational's fractional representation.
    - denom
```
long denom
```
      Components of the rational's fractional representation.
Package loci.formats.tools
- Class loci.formats.tools.EditTiffG extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - textArea
```
javax.swing.JTextArea textArea
```
    - fileBox
```
javax.swing.JFileChooser fileBox
```
    - file
```
java.io.File file
```

Package loci.plugins.config

Class loci.plugins.config.ConfigWindow extends javax.swing.JFrame implements Serializable

Serialized Fields

formatsListModel

javax.swing.DefaultListModel<E> formatsListModel

formatsList
```
javax.swing.JList<E> formatsList
```
formatInfo
```
javax.swing.JPanel formatInfo
```
extensions
```
javax.swing.JTextField extensions
```
sliceLabel
```
javax.swing.JTextField sliceLabel
```
enabledBox
```
javax.swing.JCheckBox enabledBox
```
windowlessBox
```
javax.swing.JCheckBox windowlessBox
```
upgradeBox
```
javax.swing.JCheckBox upgradeBox
```

libsListModel

javax.swing.DefaultListModel<E> libsListModel

libsList
```
javax.swing.JList<E> libsList
```
type
```
javax.swing.JTextField type
```
status
```
javax.swing.JTextField status
```
version
```
javax.swing.JTextField version
```
path
```
javax.swing.JTextField path
```
url
```
javax.swing.JTextField url
```
license
```
javax.swing.JTextField license
```
notes
```
javax.swing.JTextArea notes
```
installButton
```
javax.swing.JButton installButton
```
setSliceLabelButton
```
javax.swing.JButton setSliceLabelButton
```

resetSliceLabelButton

javax.swing.JButton resetSliceLabelButton

log
```
java.io.PrintWriter log
```

Class loci.plugins.config.InstallWizard extends javax.swing.JFrame implements Serializable

Package loci.plugins.in
- Class loci.plugins.in.ImporterMetadata extends java.util.HashMap<java.lang.String,java.lang.Object> implements Serializable
Package loci.plugins.shortcut
- Class loci.plugins.shortcut.ShortcutPanel extends javax.swing.JPanel implements Serializable
- Class loci.plugins.shortcut.ShortcutTransferHandler extends javax.swing.TransferHandler implements Serializable
  - Serialized Fields
    - shortcutPanel
```
ShortcutPanel shortcutPanel
```
      Associated shortcut panel.
Package loci.plugins.util
- Class loci.plugins.util.BrowserOptionsWindow extends javax.swing.JFrame implements Serializable
- Class loci.plugins.util.DataBrowser extends ij.gui.StackWindow implements Serializable
  - Serialized Fields
    - fpsSpin
```
javax.swing.JSpinner fpsSpin
```
    - animate
```
java.awt.Button animate
```
    - options
```
java.awt.Button options
```
    - metadata
```
java.awt.Button metadata
```
    - anim
```
boolean anim
```
    - allowShow
```
boolean allowShow
```
    - metaWindow
```
XMLWindow metaWindow
```
    - optionsWindow
```
BrowserOptionsWindow optionsWindow
```
    - xml
```
java.lang.String xml
```
    - zScroll
```
java.awt.Scrollbar zScroll
```
    - cScroll
```
java.awt.Scrollbar cScroll
```
    - tScroll
```
java.awt.Scrollbar tScroll
```
    - cSliders
```
java.awt.Scrollbar[] cSliders
```
    - cLengths
```
int[] cLengths
```
    - cIndex
```
int[] cIndex
```
- Class loci.plugins.util.SearchableWindow extends ij.text.TextWindow implements Serializable
  - Serialized Fields
    - panel
```
ij.text.TextPanel panel
```
    - index
```
int index
```
Package org.libjpegturbo.turbojpeg
- Class org.libjpegturbo.turbojpeg.TJTransform extends java.awt.Rectangle implements Serializable
  
  serialVersionUID:
  
  -127367705761430371L
  - Serialized Fields
    - op
```
int op
```
      Transform operation (one of OP_*)
    - options
```
int options
```
      Transform options (bitwise OR of one or more of OPT_*)
    - cf
```
TJCustomFilter cf
```
      Custom filter instance

Serialized Form

Package loci.formats

Class loci.formats.FormatException extends java.lang.Exception implements Serializable

Class loci.formats.IllegalBlockException extends java.lang.IllegalArgumentException implements Serializable

Class loci.formats.MissingLibraryException extends FormatException implements Serializable

Class loci.formats.UnknownFormatException extends FormatException implements Serializable

Class loci.formats.UnsupportedCompressionException extends FormatException implements Serializable

Package loci.formats.cache

Class loci.formats.cache.CacheException extends FormatException implements Serializable

Package loci.formats.gui

Class loci.formats.gui.CacheComponent extends javax.swing.JPanel implements Serializable

Serialized Fields

cache

sourceChooser

strategyChooser

range

priority

order

id

lengths

Class loci.formats.gui.CacheIndicator extends javax.swing.JComponent implements Serializable

Serialized Fields

cache

axis

comp

lPad

rPad

Class loci.formats.gui.DataConverter extends javax.swing.JFrame implements Serializable

Serialized Fields

reader

swap

biReader

writer

biWriter

rc

wc

shutdown

force

input

output

forceType

includeZ

includeT

includeC

zLabel

tLabel

cLabel

zChoice

tChoice

cChoice

codec

fps

series

seriesRow

progress

convert

Class loci.formats.gui.ImageViewer extends javax.swing.JFrame implements Serializable

Serialized Fields

pane

icon

iconLabel

sliderPanel

nSlider

zSlider

tSlider

cSlider

probeLabel

fileView

fileSave

omeMeta

myReader

myWriter

fileReader

fileWriter

filename

in

images

sizeZ

sizeT

sizeC