loci.formats.internal

Class WellContainer

java.lang.Object

loci.formats.internal.WellContainer

All Implemented Interfaces:

java.lang.Comparable<WellContainer>

Direct Known Subclasses:

JDCEReader.JDCEWell

public abstract class WellContainer
extends java.lang.Object
implements java.lang.Comparable<WellContainer>

Represents a well in a plate.

Field Summary

Fields

Modifier and Type	Field and Description
private int	columnIndex
private int	fieldCount
private java.util.List<java.lang.String>	files
private int	plateAcquisitionIndex
private int	rowIndex
private int	wellIndex

Constructor Summary

Constructors

Constructor and Description
WellContainer()
WellContainer(int pa, int row, int col, int fields)

Method Summary

Modifier and Type	Method and Description
void	addFile(java.lang.String file)
int	compareTo(WellContainer w)
void	fillMetadataStore(MetadataStore store, int plate, int plateAcq, int wellSampleStart, int nextImage)
void	fillMetadataStore(MetadataStore store, int plate, int plateAcq, int well, int wellSampleStart, int nextImage)
java.util.List<java.lang.String>	getAllFiles()
int	getColumnIndex()
int	getFieldCount()
java.lang.String	getFile(int fieldIndex, int planeIndex)
abstract java.lang.String[]	getFiles(int fieldIndex)
int	getPlateAcquisition()
int	getRowIndex()
int	getWellIndex()
void	setColumnIndex(int newColumn)
void	setFieldCount(int fields)
void	setPlateAcquisition(int pa)
void	setRowIndex(int newRow)
void	setWellIndex(int index)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

plateAcquisitionIndex

private int plateAcquisitionIndex

rowIndex

private int rowIndex

columnIndex

private int columnIndex

wellIndex

private transient int wellIndex

fieldCount

private int fieldCount

files

private java.util.List<java.lang.String> files

Constructor Detail

WellContainer

public WellContainer()

WellContainer

public WellContainer(int pa,
                     int row,
                     int col,
                     int fields)

Method Detail

getFile

public java.lang.String getFile(int fieldIndex,
                                int planeIndex)

getFiles

public abstract java.lang.String[] getFiles(int fieldIndex)

getAllFiles

public java.util.List<java.lang.String> getAllFiles()

addFile

public void addFile(java.lang.String file)

getPlateAcquisition

public int getPlateAcquisition()

setPlateAcquisition

public void setPlateAcquisition(int pa)

getRowIndex

public int getRowIndex()

setRowIndex

public void setRowIndex(int newRow)

getColumnIndex

public int getColumnIndex()

setColumnIndex

public void setColumnIndex(int newColumn)

getFieldCount

public int getFieldCount()

setFieldCount

public void setFieldCount(int fields)

getWellIndex

public int getWellIndex()

setWellIndex

public void setWellIndex(int index)

fillMetadataStore

public void fillMetadataStore(MetadataStore store,
                              int plate,
                              int plateAcq,
                              int wellSampleStart,
                              int nextImage)

fillMetadataStore

public void fillMetadataStore(MetadataStore store,
                              int plate,
                              int plateAcq,
                              int well,
                              int wellSampleStart,
                              int nextImage)

compareTo

public int compareTo(WellContainer w)

Specified by:

compareTo in interface java.lang.Comparable<WellContainer>