loci.formats.in

Class JDCEReader.JDCEWell

java.lang.Object

loci.formats.internal.WellContainer

loci.formats.in.JDCEReader.JDCEWell

All Implemented Interfaces:

java.lang.Comparable<WellContainer>

Enclosing class:

JDCEReader

class JDCEReader.JDCEWell
extends WellContainer

Field Summary

Fields

Modifier and Type	Field and Description
(package private) java.util.HashMap<java.lang.String,JDCEReader.PlaneMetadata>	metadataMap
(package private) int	planeCount
(package private) java.util.HashMap<java.lang.String,java.lang.Integer>	posMap

Constructor Summary

Constructors

Constructor and Description
JDCEWell(int row, int col, int planeCount)

Method Summary

Modifier and Type	Method and Description
void	addFile(java.lang.String file, int fieldIndex, int planeIndex) Add file for the given field and plane indexes.
void	addPlaneMetadata(JDCEReader.PlaneMetadata p, int[] position)
java.lang.String[]	getFiles(int fieldIndex)
private int[]	getIndex(java.lang.String key)
JDCEReader.PlaneMetadata	getPlaneMetadata(int field, int[] position)

Methods inherited from class loci.formats.internal.WellContainer

addFile, compareTo, fillMetadataStore, fillMetadataStore, getAllFiles, getColumnIndex, getFieldCount, getFile, getPlateAcquisition, getRowIndex, getWellIndex, setColumnIndex, setFieldCount, setPlateAcquisition, setRowIndex, setWellIndex

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

posMap

java.util.HashMap<java.lang.String,java.lang.Integer> posMap

metadataMap

java.util.HashMap<java.lang.String,JDCEReader.PlaneMetadata> metadataMap

planeCount

int planeCount

Constructor Detail

JDCEWell

public JDCEWell(int row,
                int col,
                int planeCount)

Method Detail

addFile

public void addFile(java.lang.String file,
                    int fieldIndex,
                    int planeIndex)

Add file for the given field and plane indexes.

getIndex

private int[] getIndex(java.lang.String key)

getFiles

public java.lang.String[] getFiles(int fieldIndex)

Specified by:

getFiles in class WellContainer

addPlaneMetadata

public void addPlaneMetadata(JDCEReader.PlaneMetadata p,
                             int[] position)

getPlaneMetadata

public JDCEReader.PlaneMetadata getPlaneMetadata(int field,
                                                 int[] position)