CellSensReader (Bio-Formats API)

java.lang.Object
- loci.formats.FormatHandler
- - loci.formats.FormatReader
  - - loci.formats.in.CellSensReader

All Implemented Interfaces:

java.io.Closeable, java.lang.AutoCloseable, ICompressedTileReader, IFormatHandler, IFormatReader, IMetadataConfigurable, IPyramidHandler
```
public class CellSensReader
extends FormatReader
```
CellSensReader is the file format reader for cellSens .vsi files.

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

(package private) class CellSensReader.Pyramid

(package private) class CellSensReader.TileCoordinate

Nested Classes
Modifier and Type	Class and Description
`(package private) class`	`CellSensReader.Pyramid`
`(package private) class`	`CellSensReader.TileCoordinate`

Field Summary

Fields
Modifier and Type	Field and Description
`private static int`	`ACCUMULATION`
`private static int`	`ACCUMULATION_MODE`
`private static int`	`ACQUISITION_PROPERTIES`
`private static int`	`ACTIVE_CHANNEL`
`private static int`	`ACTIVE_LAYER_INDEX_VECTOR`
`private static int`	`ACTIVE_LAYER_VECTOR`
`private static int`	`ACTIVE_STACK_DIMENSION`
`private static int`	`ANDOR_SHIFT_SPEED`
`private static int`	`AUTOEXPOSURE`
`private static int`	`AVERAGING`
`private java.util.HashMap<java.lang.Integer,byte[]>`	`backgroundColor`
`private static int`	`BASELINE_OFFSET_CLAMP`
`private boolean[]`	`bgr`
`private static int`	`BGR`
`private static int`	`BIT_DEPTH`
`private static int`	`BLUE_GAIN`
`private static int`	`BLUE_OFFSET`
`private static int`	`BMP`
`private static int`	`BOOLEAN`
`private static int`	`BRIGHTNESS`
`private static int`	`C`
`private static int`	`CAMERA_GAIN`
`private static int`	`CAMERA_GAMMA`
`private static int`	`CAMERA_OFFSET`
`private static int`	`CANVAS_COLOR_1`
`private static int`	`CANVAS_COLOR_2`
`private static int`	`CCD_SENSITIVITY`
`private static int`	`CHAINED_LAYERS`
`private static int`	`CHANNEL_CONTRAST_BRIGHTNESS`
`private static int`	`CHANNEL_DIM`
`private static int`	`CHANNEL_GAMMA_CORRECTION`
`private static int`	`CHANNEL_INFO_PROPERTIES`
`private static int`	`CHANNEL_NAME`
`private static int`	`CHANNEL_OVERFLOW`
`private static int`	`CHANNEL_PROPERTIES`
`private static int`	`CHANNEL_TRANSPARENCY_VALUE`
`private static int`	`CHANNEL_VISIBLE`
`private int`	`channelCount`
`private static int`	`CHAR`
`private static int`	`CLIPPING`
`private static int`	`CLIPPING_STATE`
`private static int`	`COARSE_FRAME_IFD`
`private static int`	`COARSE_PYRAMID_LEVEL`
`private static int`	`COLLECTION_VOLUME`
`private static int`	`COLOR_SPACE`
`private static int`	`COLORSPACE`
`private java.util.ArrayList<java.lang.Integer>`	`cols`
`private static int`	`COMPLEX`
`private java.util.ArrayList<java.lang.Integer>`	`compressionType`
`private static int`	`CONTRAST`
`private static int`	`CONTRAST_BRIGHTNESS`
`private static int`	`CONTRAST_TARGET`
`private static int`	`COOLING_ON`
`private static int`	`CREATION_TIME`
`private static int`	`CUSTOM_GRAYSCALE`
`private static int`	`DATE`
`private static int`	`DEFAULT_BACKGROUND_COLOR`
`private static int`	`DEFAULT_IMAGE`
`private static int`	`DEFAULT_SAMPLE_IFD`
`private static int`	`DEVICE_ID`
`private static int`	`DEVICE_MANUFACTURER`
`private static int`	`DEVICE_NAME`
`private static int`	`DEVICE_SUBTYPE`
`private static int`	`DIM_INDEX_1`
`private static int`	`DIM_INDEX_2`
`private static int`	`DIMENSION_DESCRIPTION_VOLUME`
`private static int`	`DIMENSION_INCREMENT_ID`
`private static int`	`DIMENSION_MEANING`
`private static int`	`DIMENSION_NAME`
`private static int`	`DIMENSION_SIZE`
`private static int`	`DIMENSION_START_ID`
`private static int`	`DIMENSION_VALUE_ID`
`private int`	`dimensionTag`
`private static int`	`DISPLAY_COLOR`
`private static int`	`DISPLAY_CONTRAST_BRIGHTNESS`
`private static int`	`DISPLAY_GAMMA_CORRECTION`
`private static int`	`DISPLAY_LIMITS`
`private static int`	`DISPLAY_LUT`
`private static int`	`DISPLAY_MAPPING_VOLUME`
`private static int`	`DISPLAY_PROCESSOR_TYPE`
`private static int`	`DISPLAY_STACK_ID`
`private static int`	`DISPLAY_STACK_INDEX`
`private static int`	`DISPLAY_VISIBLE`
`private static int`	`DISPLAYED_LUT_ID`
`private static int`	`DOCUMENT_AUTHOR`
`private static int`	`DOCUMENT_COMPANY`
`private static int`	`DOCUMENT_CREATOR_BUILD_NUMBER`
`private static int`	`DOCUMENT_CREATOR_MAJOR_VERSION`
`private static int`	`DOCUMENT_CREATOR_MINOR_VERSION`
`private static int`	`DOCUMENT_CREATOR_NAME`
`private static int`	`DOCUMENT_CREATOR_PACKAGE`
`private static int`	`DOCUMENT_CREATOR_SUB_VERSION`
`private static int`	`DOCUMENT_NAME`
`private static int`	`DOCUMENT_NOTE`
`private static int`	`DOCUMENT_PRODUCT`
`private static int`	`DOCUMENT_PRODUCT_NAME`
`private static int`	`DOCUMENT_PRODUCT_VERSION`
`private static int`	`DOCUMENT_PROPERTIES`
`private static int`	`DOCUMENT_THUMB`
`private static int`	`DOCUMENT_TIME`
`private static int`	`DOCUMENT_TYPE_HINT`
`private static int`	`DOUBLE`
`private static int`	`DOUBLE_2`
`private static int`	`DOUBLE_2_2`
`private static int`	`DOUBLE_3`
`private static int`	`DOUBLE_3_3`
`private static int`	`DOUBLE_4`
`private static int`	`DOUBLE_4_4`
`private static int`	`DOUBLE_ARRAY_2`
`private static int`	`DOUBLE_ARRAY_3`
`private static int`	`DOUBLE_INTERVAL`
`private static int`	`DOUBLE_RECT`
`private static int`	`DP80_FRAME_CENTERING`
`private static int`	`DWORD`
`private static int`	`DYNAMIC_PROPERTIES`
`private static int`	`EFI_HEIGHT_MAP`
`private static int`	`EFI_SHARPNESS_MAP`
`private static int`	`EFI_STACK`
`private static int`	`EFI_TEXTURE_MAP`
`private static int`	`EM_GAIN`
`private static int`	`ENHANCED_DYNAMIC_RANGE`
`private boolean`	`expectETS`
`private static int`	`EXPOSURE_METERING_MODE`
`private static int`	`EXPOSURE_TIME`
`private static int`	`EXTERNAL_DATA_VOLUME`
`private static int`	`EXTERNAL_FILE_PROPERTIES`
`private static int`	`EXTRA_SAMPLES`
`private static int`	`EXTRA_SAMPLES_PROPERTIES`
`private java.util.ArrayList<java.lang.String>`	`extraFiles`
`static boolean`	`FAIL_ON_MISSING_DEFAULT`
`static java.lang.String`	`FAIL_ON_MISSING_KEY`
`private static int`	`FAN_SPEED`
`private static int`	`FIELD_TYPE`
`private java.util.HashMap<java.lang.Integer,java.lang.String>`	`fileMap`
`private static int`	`FLOAT`
`private static int`	`FOCUS_IMAGE`
`private boolean`	`foundChannelTag`
`private static int`	`FRAME_ORIGIN`
`private static int`	`FRAME_PROPERTIES`
`private static int`	`FRAME_SCALE`
`private static int`	`FRAME_SIZE`
`private static int`	`FRAME_TRANSFER`
`private static int`	`FRAME_TYPE`
`private static int`	`GAIN_UNIT`
`private static int`	`GAMMA_CORRECTION`
`private static int`	`GRADIENT_LUT`
`private static int`	`GREEN_GAIN`
`private static int`	`GREEN_OFFSET`
`private static int`	`HAS_EXTERNAL_FILE`
`private static int`	`HDRI_EXPOSURE_RANGE`
`private static int`	`HDRI_FRAMES`
`private static int`	`HDRI_MAP_MODE`
`private static int`	`HDRI_ON`
`private static int`	`HIDDEN_LAYER`
`private static int`	`HOT_PIXEL_CORRECTION`
`private static int`	`ICC_ENABLED`
`private IFDList`	`ifds`
`private static int`	`IMAGE_BOUNDARY`
`private static int`	`IMAGE_COLLECTION_PROPERTIES`
`private static int`	`IMAGE_FRAME_VOLUME`
`private boolean`	`inDimensionProperties`
`private static int`	`INT`
`private static int`	`INT_2`
`private static int`	`INT_3`
`private static int`	`INT_4`
`private static int`	`INT_ARRAY_2`
`private static int`	`INT_ARRAY_3`
`private static int`	`INT_ARRAY_4`
`private static int`	`INT_ARRAY_5`
`private static int`	`INT_INTERVAL`
`private static int`	`INT_RECT`
`private static int`	`IS_TRANSMISSION`
`private static int`	`ISO_SENSITIVITY`
`private boolean`	`jpeg`
`private static int`	`JPEG`
`private static int`	`JPEG_2000`
`private static int`	`JPEG_LOSSLESS`
`private static int`	`LAMBDA`
`private static int`	`LAMBDA_INCREMENT`
`private static int`	`LAMBDA_START`
`private static int`	`LAMBDA_VALUE`
`private static int`	`LAYER_INFO_PROPERTIES`
`private static int`	`LAYER_SELECTION`
`private static int`	`LAYER_SELECTION_INDEX`
`private static int`	`LAYER_XY_FIXED`
`private static int`	`LIVE_OVERFLOW`
`private static int`	`LONG`
`private static int`	`MACRO_IMAGE`
`private static int`	`MAGNIFICATION`
`private static int`	`MEM_MODEL`
`private int`	`metadataIndex`
`private static int`	`MIRROR_H`
`private static int`	`MIRROR_V`
`private static int`	`MULTIDIM_IMAGE_VOLUME`
`private static int`	`MULTIDIM_STACK_PROPERTIES`
`private java.util.ArrayList<java.lang.Integer>`	`nDimensions`
`private static int`	`NEW_MDIM_VOLUME_HEADER`
`private static int`	`NEW_VOLUME_HEADER`
`private static int`	`NOISE_REDUCTION`
`private static int`	`NUMERICAL_APERTURE`
`private static int`	`OBJECTIVE_MAG`
`private static int`	`OBJECTIVE_NAME`
`private static int`	`OBJECTIVE_TYPE`
`private static int`	`OPTICAL_PATH`
`private static int`	`ORIGINAL_FRAME_RATE`
`private static int`	`OVERVIEW_IMAGE`
`private TiffParser`	`parser`
`private static int`	`PHASE`
`private static int`	`PHOTOBLEACHING`
`private static int`	`PHOTON_IMAGING_MODE`
`private static int`	`PIXEL_CLOCK`
`private static int`	`PIXEL_INFO_TYPE`
`private static int`	`PLANE_ORIGIN_RWC`
`private static int`	`PLANE_SCALE_RWC`
`private static int`	`PLANE_UNIT`
`private static int`	`PNG`
`private static int`	`PREAMP_GAIN_VALUE`
`private int`	`previousTag`
`private static int`	`PROPERTY_SET_VOLUME`
`private java.util.ArrayList<CellSensReader.Pyramid>`	`pyramids`
`private static int`	`RAW`
`private static int`	`RED_GAIN`
`private static int`	`RED_OFFSET`
`private static int`	`REFRACTIVE_INDEX`
`private static int`	`RENDER_OPERATION_ID`
`private static int`	`RGB`
`private java.util.ArrayList<java.lang.Integer>`	`rows`
`private static int`	`RWC_FRAME_ORIGIN`
`private static int`	`RWC_FRAME_SCALE`
`private static int`	`RWC_FRAME_UNIT`
`private static int`	`SAMPLE_FLAGS_LIST`
`private static int`	`SAMPLE_ID_LIST`
`private static int`	`SAMPLE_MASK`
`private static int`	`SATURATION`
`private static int`	`SELECTED_CHANNELS`
`private static int`	`SELECTED_FRAMES`
`private static int`	`SERIALIZED_MASK`
`private static int`	`SHADING_MUL`
`private static int`	`SHADING_SUB`
`private static int`	`SHARPNESS`
`private static int`	`SHORT`
`private static int`	`SIGNAL_OUTPUT`
`private static int`	`SLIDE_INFO`
`private static int`	`SLIDE_NAME`
`private static int`	`SLIDE_PREPARATION`
`private static int`	`SLIDE_PROPERTIES`
`private static int`	`SLIDE_SPECIMEN`
`private static int`	`SLIDE_STAINING`
`private static int`	`SLIDE_TISSUE`
`private static int`	`SPURIOUS_NOISE_REMOVAL`
`private static int`	`STACK_DISPLAY_LUT`
`private static int`	`STACK_NAME`
`private static int`	`STACK_TYPE`
`private static int`	`T`
`private static int`	`TCHAR`
`private static int`	`TEMPERATURE_TARGET`
`private static int`	`THIRD_ID`
`private static int`	`TIFF_IFD`
`private static int`	`TILE_ORIGIN`
`private static int`	`TILE_SYSTEM`
`private java.util.ArrayList<java.util.ArrayList<CellSensReader.TileCoordinate>>`	`tileMap`
`private java.util.ArrayList<java.lang.Long[]>`	`tileOffsets`
`private java.util.ArrayList<java.lang.Integer>`	`tileX`
`private java.util.ArrayList<java.lang.Integer>`	`tileY`
`private static int`	`TIME_INCREMENT`
`private static int`	`TIME_START`
`private static int`	`TIME_VALUE`
`private static int`	`TIMESTAMP`
`private static int`	`TRANSPARENCY_ID`
`private static int`	`TRANSPARENCY_VALUE`
`private static int`	`UCHAR`
`private static int`	`UINT`
`private static int`	`ULONG`
`private static int`	`UNICODE_TCHAR`
`private static int`	`UNKNOWN`
`private static int`	`UNKNOWN_BLOBS_VOLUME`
`private static int`	`USE_ORIGINAL_FRAME_RATE`
`private java.lang.String[]`	`usedFiles`
`private static int`	`USHORT`
`private static int`	`VALUE`
`private static int`	`VCLOCK_AMPLITUDE`
`private static int`	`VECTOR_DATA`
`private static int`	`VECTOR_LAYER_VOLUME`
`private static int`	`VERSION_NUMBER`
`private static int`	`VOLUME_INDEX`
`private static int`	`WB_MODE`
`private static int`	`WB_PRESET_ID`
`private static int`	`WB_PRESET_NAME`
`private static int`	`WIDER`
`private static int`	`WIDER_ENABLED`
`private static int`	`WORKING_DISTANCE`
`private static int`	`X_BINNING`
`private static int`	`Y_BINNING`
`private static int`	`Y_DIMENSION_UNIT`
`private static int`	`Y_PLANE_DIMENSION_UNIT`
`private static int`	`Z`
`private static int`	`Z_INCREMENT`
`private static int`	`Z_START`
`private static int`	`Z_VALUE`
`private int`	`zCount`

Fields inherited from class loci.formats.FormatReader
core, coreIndex, datasetDescription, domains, fillColor, filterMetadata, flattenedResolutions, group, hasCompanionFiles, in, indexedAsRGB, metadata, metadataStore, normalizeData, resolution, saveOriginalMetadata, series, suffixNecessary, suffixSufficient, THUMBNAIL_DIMENSION

Fields inherited from class loci.formats.FormatHandler
COMPRESSION_SUFFIXES, currentId, format, LOGGER, metadataOptions, suffixes

Fields inherited from interface loci.formats.IFormatReader
CAN_GROUP, CANNOT_GROUP, MUST_GROUP

Constructor Summary

Constructors
Constructor and Description

CellSensReader()
Constructs a new cellSens reader.

Constructors
Constructor and Description
`CellSensReader()` Constructs a new cellSens reader.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`close(boolean fileOnly)` Closes the currently open file.
`private int`	`convertPixelType(int pixelType)`
`private byte[]`	`decodeTile(int no, int row, int col)`
`boolean`	`failOnMissingETS()`
`int`	`fileGroupOption(java.lang.String id)` Returns an indication of whether the files in a multi-file dataset can be handled individually.
`protected java.util.ArrayList<java.lang.String>`	`getAvailableOptions()` Returns the list of available metadata options.
`private CellSensReader.Pyramid`	`getCurrentPyramid()` Get an object representing the pyramid which contains the current series/resolution.
`private int`	`getCurrentPyramidIndex()` Get an index to the pyramid which contains the current series/resolution.
`private java.lang.String`	`getDeviceSubtype(java.lang.String type)`
`private int`	`getIFDIndex()`
`int`	`getOptimalTileHeight()` Returns the optimal sub-image height for use with openBytes.
`int`	`getOptimalTileWidth()` Returns the optimal sub-image width for use with openBytes.
`private int`	`getResolutionIndex()` Get the current pyramid resolution, accounting for flattened resolutions as needed.
`java.lang.String[]`	`getSeriesUsedFiles(boolean noPixels)` Returns an array of filenames needed to open the current series.
`private java.lang.String`	`getStackType(java.lang.String type)`
`private java.lang.String`	`getTagName(int tag)`
`private int`	`getTileSize()` Get the expected decompressed size of a single tile, in bytes.
`private java.lang.String`	`getVolumeName(int tag)`
`protected void`	`initFile(java.lang.String id)` Initializes the given file (parsing header information, etc.).
`boolean`	`isSingleFile(java.lang.String id)` Returns true if the named file is expected to be the only file in the dataset.
`byte[]`	`openBytes(int no, byte[] buf, int x, int y, int w, int h)` Obtains a sub-image of the specified image plane into a pre-allocated byte array.
`byte[]`	`openThumbBytes(int no)` Obtains a thumbnail for the specified image plane from the current file, as a byte array.
`private boolean`	`parseETSFile(loci.common.RandomAccessInputStream etsFile, java.lang.String file, int s, boolean hasOrphanEtsFiles)`
`private void`	`readTags(loci.common.RandomAccessInputStream vsi, boolean populateMetadata, java.lang.String tagPrefix)`
`void`	`reopenFile()` Reopen any files that were closed, and which are expected to be open while the reader is open.

Methods inherited from class loci.formats.FormatReader
addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMetaList, addMeta, addMetaList, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMetaList, close, coreIndexToSeries, flattenHashtables, get16BitLookupTable, get8BitLookupTable, getAcquisitionMode, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getArcType, getBinning, getBitsPerPixel, getCompression, getContrastMethod, getCoreIndex, getCoreMetadataList, getCorrection, getCurrentCore, getCurrentFile, getDatasetStructureDescription, getDetectorType, getDimensionOrder, getDimensionOrder, getDomains, getEffectiveSizeC, getExperimentType, getFilamentType, getFillColor, getFillRule, getFilterType, getFontFamily, getFontStyle, getGlobalMeta, getGlobalMetadata, getIlluminationType, getImageCount, getImmersion, getIndex, getIndex, getLaserMedium, getLaserType, getMarker, getMedium, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getMicrobeamManipulationType, getMicroscopeType, getModuloC, getModuloT, getModuloZ, getNamingConvention, getPixelType, getPixelType, getPossibleDomains, getPulse, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getRotationTransform, getSeries, getSeriesCount, getSeriesMeta, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getThumbSizeX, getThumbSizeY, getTileColumns, getTileRows, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, getZCTModuloCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isThisType, isThisType, isThisType, isThisType, isThumbnailSeries, isUsedFile, makeFilterMetadata, openBytes, openBytes, openBytes, openPlane, readPlane, readPlane, readPlane, seriesToCoreIndex, setCoreIndex, setFillColor, setFlattenedResolutions, setGroupFiles, setId, setMetadataFiltered, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries, updateMetadataLists

Methods inherited from class loci.formats.FormatHandler
checkSuffix, checkSuffix, getFormat, getMetadataOptions, getNativeDataType, getSuffixes, getSupportedMetadataLevels, setMetadataOptions

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface loci.formats.IFormatHandler
getFormat, getNativeDataType, getSuffixes

Methods inherited from interface loci.formats.IMetadataConfigurable
getMetadataOptions, getSupportedMetadataLevels, setMetadataOptions

Methods inherited from interface loci.formats.ICompressedTileReader
getTileCodec, getTileCodecOptions, openCompressedBytes, openCompressedBytes

- Field Detail
  - FAIL_ON_MISSING_KEY
```
public static final java.lang.String FAIL_ON_MISSING_KEY
```
    See Also:
    
    Constant Field Values
  - FAIL_ON_MISSING_DEFAULT
```
public static final boolean FAIL_ON_MISSING_DEFAULT
```
    See Also:
    
    Constant Field Values
  - RAW
```
private static final int RAW
```
    See Also:
    
    Constant Field Values
  - JPEG
```
private static final int JPEG
```
    See Also:
    
    Constant Field Values
  - JPEG_2000
```
private static final int JPEG_2000
```
    See Also:
    
    Constant Field Values
  - JPEG_LOSSLESS
```
private static final int JPEG_LOSSLESS
```
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    Constant Field Values
  - PNG
```
private static final int PNG
```
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    Constant Field Values
  - BMP
```
private static final int BMP
```
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    Constant Field Values
  - CHAR
```
private static final int CHAR
```
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    Constant Field Values
  - UCHAR
```
private static final int UCHAR
```
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    Constant Field Values
  - SHORT
```
private static final int SHORT
```
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    Constant Field Values
  - USHORT
```
private static final int USHORT
```
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    Constant Field Values
  - INT
```
private static final int INT
```
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    Constant Field Values
  - UINT
```
private static final int UINT
```
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    Constant Field Values
  - LONG
```
private static final int LONG
```
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    Constant Field Values
  - ULONG
```
private static final int ULONG
```
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    Constant Field Values
  - FLOAT
```
private static final int FLOAT
```
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    Constant Field Values
  - DOUBLE
```
private static final int DOUBLE
```
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    Constant Field Values
  - COMPLEX
```
private static final int COMPLEX
```
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    Constant Field Values
  - BOOLEAN
```
private static final int BOOLEAN
```
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    Constant Field Values
  - TCHAR
```
private static final int TCHAR
```
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    Constant Field Values
  - DWORD
```
private static final int DWORD
```
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    Constant Field Values
  - TIMESTAMP
```
private static final int TIMESTAMP
```
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    Constant Field Values
  - DATE
```
private static final int DATE
```
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    Constant Field Values
  - INT_2
```
private static final int INT_2
```
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    Constant Field Values
  - INT_3
```
private static final int INT_3
```
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    Constant Field Values
  - INT_4
```
private static final int INT_4
```
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    Constant Field Values
  - INT_RECT
```
private static final int INT_RECT
```
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    Constant Field Values
  - DOUBLE_2
```
private static final int DOUBLE_2
```
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    Constant Field Values
  - DOUBLE_3
```
private static final int DOUBLE_3
```
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    Constant Field Values
  - DOUBLE_4
```
private static final int DOUBLE_4
```
    See Also:
    
    Constant Field Values
  - DOUBLE_RECT
```
private static final int DOUBLE_RECT
```
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    Constant Field Values
  - DOUBLE_2_2
```
private static final int DOUBLE_2_2
```
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    Constant Field Values
  - DOUBLE_3_3
```
private static final int DOUBLE_3_3
```
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    Constant Field Values
  - DOUBLE_4_4
```
private static final int DOUBLE_4_4
```
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    Constant Field Values
  - INT_INTERVAL
```
private static final int INT_INTERVAL
```
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    Constant Field Values
  - DOUBLE_INTERVAL
```
private static final int DOUBLE_INTERVAL
```
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    Constant Field Values
  - RGB
```
private static final int RGB
```
    See Also:
    
    Constant Field Values
  - BGR
```
private static final int BGR
```
    See Also:
    
    Constant Field Values
  - FIELD_TYPE
```
private static final int FIELD_TYPE
```
    See Also:
    
    Constant Field Values
  - MEM_MODEL
```
private static final int MEM_MODEL
```
    See Also:
    
    Constant Field Values
  - COLOR_SPACE
```
private static final int COLOR_SPACE
```
    See Also:
    
    Constant Field Values
  - INT_ARRAY_2
```
private static final int INT_ARRAY_2
```
    See Also:
    
    Constant Field Values
  - INT_ARRAY_3
```
private static final int INT_ARRAY_3
```
    See Also:
    
    Constant Field Values
  - INT_ARRAY_4
```
private static final int INT_ARRAY_4
```
    See Also:
    
    Constant Field Values
  - INT_ARRAY_5
```
private static final int INT_ARRAY_5
```
    See Also:
    
    Constant Field Values
  - DOUBLE_ARRAY_2
```
private static final int DOUBLE_ARRAY_2
```
    See Also:
    
    Constant Field Values
  - DOUBLE_ARRAY_3
```
private static final int DOUBLE_ARRAY_3
```
    See Also:
    
    Constant Field Values
  - UNICODE_TCHAR
```
private static final int UNICODE_TCHAR
```
    See Also:
    
    Constant Field Values
  - DIM_INDEX_1
```
private static final int DIM_INDEX_1
```
    See Also:
    
    Constant Field Values
  - DIM_INDEX_2
```
private static final int DIM_INDEX_2
```
    See Also:
    
    Constant Field Values
  - VOLUME_INDEX
```
private static final int VOLUME_INDEX
```
    See Also:
    
    Constant Field Values
  - PIXEL_INFO_TYPE
```
private static final int PIXEL_INFO_TYPE
```
    See Also:
    
    Constant Field Values
  - NEW_VOLUME_HEADER
```
private static final int NEW_VOLUME_HEADER
```
    See Also:
    
    Constant Field Values
  - PROPERTY_SET_VOLUME
```
private static final int PROPERTY_SET_VOLUME
```
    See Also:
    
    Constant Field Values
  - NEW_MDIM_VOLUME_HEADER
```
private static final int NEW_MDIM_VOLUME_HEADER
```
    See Also:
    
    Constant Field Values
  - TIFF_IFD
```
private static final int TIFF_IFD
```
    See Also:
    
    Constant Field Values
  - VECTOR_DATA
```
private static final int VECTOR_DATA
```
    See Also:
    
    Constant Field Values
  - COLLECTION_VOLUME
```
private static final int COLLECTION_VOLUME
```
    See Also:
    
    Constant Field Values
  - MULTIDIM_IMAGE_VOLUME
```
private static final int MULTIDIM_IMAGE_VOLUME
```
    See Also:
    
    Constant Field Values
  - IMAGE_FRAME_VOLUME
```
private static final int IMAGE_FRAME_VOLUME
```
    See Also:
    
    Constant Field Values
  - DIMENSION_SIZE
```
private static final int DIMENSION_SIZE
```
    See Also:
    
    Constant Field Values
  - IMAGE_COLLECTION_PROPERTIES
```
private static final int IMAGE_COLLECTION_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - MULTIDIM_STACK_PROPERTIES
```
private static final int MULTIDIM_STACK_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - FRAME_PROPERTIES
```
private static final int FRAME_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - DIMENSION_DESCRIPTION_VOLUME
```
private static final int DIMENSION_DESCRIPTION_VOLUME
```
    See Also:
    
    Constant Field Values
  - CHANNEL_PROPERTIES
```
private static final int CHANNEL_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - DISPLAY_MAPPING_VOLUME
```
private static final int DISPLAY_MAPPING_VOLUME
```
    See Also:
    
    Constant Field Values
  - LAYER_INFO_PROPERTIES
```
private static final int LAYER_INFO_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - CHANNEL_INFO_PROPERTIES
```
private static final int CHANNEL_INFO_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - DEFAULT_SAMPLE_IFD
```
private static final int DEFAULT_SAMPLE_IFD
```
    See Also:
    
    Constant Field Values
  - VECTOR_LAYER_VOLUME
```
private static final int VECTOR_LAYER_VOLUME
```
    See Also:
    
    Constant Field Values
  - EXTERNAL_FILE_PROPERTIES
```
private static final int EXTERNAL_FILE_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - COARSE_FRAME_IFD
```
private static final int COARSE_FRAME_IFD
```
    See Also:
    
    Constant Field Values
  - COARSE_PYRAMID_LEVEL
```
private static final int COARSE_PYRAMID_LEVEL
```
    See Also:
    
    Constant Field Values
  - SERIALIZED_MASK
```
private static final int SERIALIZED_MASK
```
    See Also:
    
    Constant Field Values
  - UNKNOWN_BLOBS_VOLUME
```
private static final int UNKNOWN_BLOBS_VOLUME
```
    See Also:
    
    Constant Field Values
  - SAMPLE_ID_LIST
```
private static final int SAMPLE_ID_LIST
```
    See Also:
    
    Constant Field Values
  - EXTRA_SAMPLES
```
private static final int EXTRA_SAMPLES
```
    See Also:
    
    Constant Field Values
  - EXTRA_SAMPLES_PROPERTIES
```
private static final int EXTRA_SAMPLES_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - SAMPLE_FLAGS_LIST
```
private static final int SAMPLE_FLAGS_LIST
```
    See Also:
    
    Constant Field Values
  - FRAME_TYPE
```
private static final int FRAME_TYPE
```
    See Also:
    
    Constant Field Values
  - DEFAULT_BACKGROUND_COLOR
```
private static final int DEFAULT_BACKGROUND_COLOR
```
    See Also:
    
    Constant Field Values
  - VERSION_NUMBER
```
private static final int VERSION_NUMBER
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_PROPERTIES
```
private static final int DOCUMENT_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_NAME
```
private static final int DOCUMENT_NAME
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_NOTE
```
private static final int DOCUMENT_NOTE
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_TIME
```
private static final int DOCUMENT_TIME
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_AUTHOR
```
private static final int DOCUMENT_AUTHOR
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_COMPANY
```
private static final int DOCUMENT_COMPANY
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_CREATOR_NAME
```
private static final int DOCUMENT_CREATOR_NAME
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_CREATOR_MAJOR_VERSION
```
private static final int DOCUMENT_CREATOR_MAJOR_VERSION
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_CREATOR_MINOR_VERSION
```
private static final int DOCUMENT_CREATOR_MINOR_VERSION
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_CREATOR_SUB_VERSION
```
private static final int DOCUMENT_CREATOR_SUB_VERSION
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_CREATOR_BUILD_NUMBER
```
private static final int DOCUMENT_CREATOR_BUILD_NUMBER
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_CREATOR_PACKAGE
```
private static final int DOCUMENT_CREATOR_PACKAGE
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_PRODUCT
```
private static final int DOCUMENT_PRODUCT
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_PRODUCT_NAME
```
private static final int DOCUMENT_PRODUCT_NAME
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_PRODUCT_VERSION
```
private static final int DOCUMENT_PRODUCT_VERSION
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_TYPE_HINT
```
private static final int DOCUMENT_TYPE_HINT
```
    See Also:
    
    Constant Field Values
  - DOCUMENT_THUMB
```
private static final int DOCUMENT_THUMB
```
    See Also:
    
    Constant Field Values
  - SLIDE_PROPERTIES
```
private static final int SLIDE_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - SLIDE_SPECIMEN
```
private static final int SLIDE_SPECIMEN
```
    See Also:
    
    Constant Field Values
  - SLIDE_TISSUE
```
private static final int SLIDE_TISSUE
```
    See Also:
    
    Constant Field Values
  - SLIDE_PREPARATION
```
private static final int SLIDE_PREPARATION
```
    See Also:
    
    Constant Field Values
  - SLIDE_STAINING
```
private static final int SLIDE_STAINING
```
    See Also:
    
    Constant Field Values
  - SLIDE_INFO
```
private static final int SLIDE_INFO
```
    See Also:
    
    Constant Field Values
  - SLIDE_NAME
```
private static final int SLIDE_NAME
```
    See Also:
    
    Constant Field Values
  - DYNAMIC_PROPERTIES
```
private static final int DYNAMIC_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - MAGNIFICATION
```
private static final int MAGNIFICATION
```
    See Also:
    
    Constant Field Values
  - IMAGE_BOUNDARY
```
private static final int IMAGE_BOUNDARY
```
    See Also:
    
    Constant Field Values
  - TILE_SYSTEM
```
private static final int TILE_SYSTEM
```
    See Also:
    
    Constant Field Values
  - HAS_EXTERNAL_FILE
```
private static final int HAS_EXTERNAL_FILE
```
    See Also:
    
    Constant Field Values
  - EXTERNAL_DATA_VOLUME
```
private static final int EXTERNAL_DATA_VOLUME
```
    See Also:
    
    Constant Field Values
  - TILE_ORIGIN
```
private static final int TILE_ORIGIN
```
    See Also:
    
    Constant Field Values
  - EXPOSURE_TIME
```
private static final int EXPOSURE_TIME
```
    See Also:
    
    Constant Field Values
  - CAMERA_GAIN
```
private static final int CAMERA_GAIN
```
    See Also:
    
    Constant Field Values
  - CAMERA_OFFSET
```
private static final int CAMERA_OFFSET
```
    See Also:
    
    Constant Field Values
  - CAMERA_GAMMA
```
private static final int CAMERA_GAMMA
```
    See Also:
    
    Constant Field Values
  - SHARPNESS
```
private static final int SHARPNESS
```
    See Also:
    
    Constant Field Values
  - RED_GAIN
```
private static final int RED_GAIN
```
    See Also:
    
    Constant Field Values
  - GREEN_GAIN
```
private static final int GREEN_GAIN
```
    See Also:
    
    Constant Field Values
  - BLUE_GAIN
```
private static final int BLUE_GAIN
```
    See Also:
    
    Constant Field Values
  - RED_OFFSET
```
private static final int RED_OFFSET
```
    See Also:
    
    Constant Field Values
  - GREEN_OFFSET
```
private static final int GREEN_OFFSET
```
    See Also:
    
    Constant Field Values
  - BLUE_OFFSET
```
private static final int BLUE_OFFSET
```
    See Also:
    
    Constant Field Values
  - SHADING_SUB
```
private static final int SHADING_SUB
```
    See Also:
    
    Constant Field Values
  - SHADING_MUL
```
private static final int SHADING_MUL
```
    See Also:
    
    Constant Field Values
  - X_BINNING
```
private static final int X_BINNING
```
    See Also:
    
    Constant Field Values
  - Y_BINNING
```
private static final int Y_BINNING
```
    See Also:
    
    Constant Field Values
  - CLIPPING
```
private static final int CLIPPING
```
    See Also:
    
    Constant Field Values
  - MIRROR_H
```
private static final int MIRROR_H
```
    See Also:
    
    Constant Field Values
  - MIRROR_V
```
private static final int MIRROR_V
```
    See Also:
    
    Constant Field Values
  - CLIPPING_STATE
```
private static final int CLIPPING_STATE
```
    See Also:
    
    Constant Field Values
  - ICC_ENABLED
```
private static final int ICC_ENABLED
```
    See Also:
    
    Constant Field Values
  - BRIGHTNESS
```
private static final int BRIGHTNESS
```
    See Also:
    
    Constant Field Values
  - CONTRAST
```
private static final int CONTRAST
```
    See Also:
    
    Constant Field Values
  - CONTRAST_TARGET
```
private static final int CONTRAST_TARGET
```
    See Also:
    
    Constant Field Values
  - ACCUMULATION
```
private static final int ACCUMULATION
```
    See Also:
    
    Constant Field Values
  - AVERAGING
```
private static final int AVERAGING
```
    See Also:
    
    Constant Field Values
  - ISO_SENSITIVITY
```
private static final int ISO_SENSITIVITY
```
    See Also:
    
    Constant Field Values
  - ACCUMULATION_MODE
```
private static final int ACCUMULATION_MODE
```
    See Also:
    
    Constant Field Values
  - AUTOEXPOSURE
```
private static final int AUTOEXPOSURE
```
    See Also:
    
    Constant Field Values
  - EXPOSURE_METERING_MODE
```
private static final int EXPOSURE_METERING_MODE
```
    See Also:
    
    Constant Field Values
  - FRAME_SIZE
```
private static final int FRAME_SIZE
```
    See Also:
    
    Constant Field Values
  - BIT_DEPTH
```
private static final int BIT_DEPTH
```
    See Also:
    
    Constant Field Values
  - HDRI_ON
```
private static final int HDRI_ON
```
    See Also:
    
    Constant Field Values
  - HDRI_FRAMES
```
private static final int HDRI_FRAMES
```
    See Also:
    
    Constant Field Values
  - HDRI_EXPOSURE_RANGE
```
private static final int HDRI_EXPOSURE_RANGE
```
    See Also:
    
    Constant Field Values
  - HDRI_MAP_MODE
```
private static final int HDRI_MAP_MODE
```
    See Also:
    
    Constant Field Values
  - CUSTOM_GRAYSCALE
```
private static final int CUSTOM_GRAYSCALE
```
    See Also:
    
    Constant Field Values
  - SATURATION
```
private static final int SATURATION
```
    See Also:
    
    Constant Field Values
  - WB_PRESET_ID
```
private static final int WB_PRESET_ID
```
    See Also:
    
    Constant Field Values
  - WB_PRESET_NAME
```
private static final int WB_PRESET_NAME
```
    See Also:
    
    Constant Field Values
  - WB_MODE
```
private static final int WB_MODE
```
    See Also:
    
    Constant Field Values
  - CCD_SENSITIVITY
```
private static final int CCD_SENSITIVITY
```
    See Also:
    
    Constant Field Values
  - ENHANCED_DYNAMIC_RANGE
```
private static final int ENHANCED_DYNAMIC_RANGE
```
    See Also:
    
    Constant Field Values
  - PIXEL_CLOCK
```
private static final int PIXEL_CLOCK
```
    See Also:
    
    Constant Field Values
  - COLORSPACE
```
private static final int COLORSPACE
```
    See Also:
    
    Constant Field Values
  - COOLING_ON
```
private static final int COOLING_ON
```
    See Also:
    
    Constant Field Values
  - FAN_SPEED
```
private static final int FAN_SPEED
```
    See Also:
    
    Constant Field Values
  - TEMPERATURE_TARGET
```
private static final int TEMPERATURE_TARGET
```
    See Also:
    
    Constant Field Values
  - GAIN_UNIT
```
private static final int GAIN_UNIT
```
    See Also:
    
    Constant Field Values
  - EM_GAIN
```
private static final int EM_GAIN
```
    See Also:
    
    Constant Field Values
  - PHOTON_IMAGING_MODE
```
private static final int PHOTON_IMAGING_MODE
```
    See Also:
    
    Constant Field Values
  - FRAME_TRANSFER
```
private static final int FRAME_TRANSFER
```
    See Also:
    
    Constant Field Values
  - ANDOR_SHIFT_SPEED
```
private static final int ANDOR_SHIFT_SPEED
```
    See Also:
    
    Constant Field Values
  - VCLOCK_AMPLITUDE
```
private static final int VCLOCK_AMPLITUDE
```
    See Also:
    
    Constant Field Values
  - SPURIOUS_NOISE_REMOVAL
```
private static final int SPURIOUS_NOISE_REMOVAL
```
    See Also:
    
    Constant Field Values
  - SIGNAL_OUTPUT
```
private static final int SIGNAL_OUTPUT
```
    See Also:
    
    Constant Field Values
  - BASELINE_OFFSET_CLAMP
```
private static final int BASELINE_OFFSET_CLAMP
```
    See Also:
    
    Constant Field Values
  - DP80_FRAME_CENTERING
```
private static final int DP80_FRAME_CENTERING
```
    See Also:
    
    Constant Field Values
  - HOT_PIXEL_CORRECTION
```
private static final int HOT_PIXEL_CORRECTION
```
    See Also:
    
    Constant Field Values
  - NOISE_REDUCTION
```
private static final int NOISE_REDUCTION
```
    See Also:
    
    Constant Field Values
  - WIDER
```
private static final int WIDER
```
    See Also:
    
    Constant Field Values
  - PHOTOBLEACHING
```
private static final int PHOTOBLEACHING
```
    See Also:
    
    Constant Field Values
  - PREAMP_GAIN_VALUE
```
private static final int PREAMP_GAIN_VALUE
```
    See Also:
    
    Constant Field Values
  - WIDER_ENABLED
```
private static final int WIDER_ENABLED
```
    See Also:
    
    Constant Field Values
  - Z_START
```
private static final int Z_START
```
    See Also:
    
    Constant Field Values
  - Z_INCREMENT
```
private static final int Z_INCREMENT
```
    See Also:
    
    Constant Field Values
  - Z_VALUE
```
private static final int Z_VALUE
```
    See Also:
    
    Constant Field Values
  - TIME_START
```
private static final int TIME_START
```
    See Also:
    
    Constant Field Values
  - TIME_INCREMENT
```
private static final int TIME_INCREMENT
```
    See Also:
    
    Constant Field Values
  - TIME_VALUE
```
private static final int TIME_VALUE
```
    See Also:
    
    Constant Field Values
  - LAMBDA_START
```
private static final int LAMBDA_START
```
    See Also:
    
    Constant Field Values
  - LAMBDA_INCREMENT
```
private static final int LAMBDA_INCREMENT
```
    See Also:
    
    Constant Field Values
  - LAMBDA_VALUE
```
private static final int LAMBDA_VALUE
```
    See Also:
    
    Constant Field Values
  - DIMENSION_NAME
```
private static final int DIMENSION_NAME
```
    See Also:
    
    Constant Field Values
  - DIMENSION_MEANING
```
private static final int DIMENSION_MEANING
```
    See Also:
    
    Constant Field Values
  - DIMENSION_START_ID
```
private static final int DIMENSION_START_ID
```
    See Also:
    
    Constant Field Values
  - DIMENSION_INCREMENT_ID
```
private static final int DIMENSION_INCREMENT_ID
```
    See Also:
    
    Constant Field Values
  - DIMENSION_VALUE_ID
```
private static final int DIMENSION_VALUE_ID
```
    See Also:
    
    Constant Field Values
  - CHANNEL_NAME
```
private static final int CHANNEL_NAME
```
    See Also:
    
    Constant Field Values
  - Z
```
private static final int Z
```
    See Also:
    
    Constant Field Values
  - T
```
private static final int T
```
    See Also:
    
    Constant Field Values
  - LAMBDA
```
private static final int LAMBDA
```
    See Also:
    
    Constant Field Values
  - C
```
private static final int C
```
    See Also:
    
    Constant Field Values
  - UNKNOWN
```
private static final int UNKNOWN
```
    See Also:
    
    Constant Field Values
  - PHASE
```
private static final int PHASE
```
    See Also:
    
    Constant Field Values
  - DISPLAY_LIMITS
```
private static final int DISPLAY_LIMITS
```
    See Also:
    
    Constant Field Values
  - STACK_DISPLAY_LUT
```
private static final int STACK_DISPLAY_LUT
```
    See Also:
    
    Constant Field Values
  - GAMMA_CORRECTION
```
private static final int GAMMA_CORRECTION
```
    See Also:
    
    Constant Field Values
  - FRAME_ORIGIN
```
private static final int FRAME_ORIGIN
```
    See Also:
    
    Constant Field Values
  - FRAME_SCALE
```
private static final int FRAME_SCALE
```
    See Also:
    
    Constant Field Values
  - DISPLAY_COLOR
```
private static final int DISPLAY_COLOR
```
    See Also:
    
    Constant Field Values
  - CREATION_TIME
```
private static final int CREATION_TIME
```
    See Also:
    
    Constant Field Values
  - RWC_FRAME_ORIGIN
```
private static final int RWC_FRAME_ORIGIN
```
    See Also:
    
    Constant Field Values
  - RWC_FRAME_SCALE
```
private static final int RWC_FRAME_SCALE
```
    See Also:
    
    Constant Field Values
  - RWC_FRAME_UNIT
```
private static final int RWC_FRAME_UNIT
```
    See Also:
    
    Constant Field Values
  - STACK_NAME
```
private static final int STACK_NAME
```
    See Also:
    
    Constant Field Values
  - CHANNEL_DIM
```
private static final int CHANNEL_DIM
```
    See Also:
    
    Constant Field Values
  - OPTICAL_PATH
```
private static final int OPTICAL_PATH
```
    See Also:
    
    Constant Field Values
  - STACK_TYPE
```
private static final int STACK_TYPE
```
    See Also:
    
    Constant Field Values
  - LIVE_OVERFLOW
```
private static final int LIVE_OVERFLOW
```
    See Also:
    
    Constant Field Values
  - IS_TRANSMISSION
```
private static final int IS_TRANSMISSION
```
    See Also:
    
    Constant Field Values
  - CONTRAST_BRIGHTNESS
```
private static final int CONTRAST_BRIGHTNESS
```
    See Also:
    
    Constant Field Values
  - ACQUISITION_PROPERTIES
```
private static final int ACQUISITION_PROPERTIES
```
    See Also:
    
    Constant Field Values
  - GRADIENT_LUT
```
private static final int GRADIENT_LUT
```
    See Also:
    
    Constant Field Values
  - DEFAULT_IMAGE
```
private static final int DEFAULT_IMAGE
```
    See Also:
    
    Constant Field Values
  - OVERVIEW_IMAGE
```
private static final int OVERVIEW_IMAGE
```
    See Also:
    
    Constant Field Values
  - SAMPLE_MASK
```
private static final int SAMPLE_MASK
```
    See Also:
    
    Constant Field Values
  - FOCUS_IMAGE
```
private static final int FOCUS_IMAGE
```
    See Also:
    
    Constant Field Values
  - EFI_SHARPNESS_MAP
```
private static final int EFI_SHARPNESS_MAP
```
    See Also:
    
    Constant Field Values
  - EFI_HEIGHT_MAP
```
private static final int EFI_HEIGHT_MAP
```
    See Also:
    
    Constant Field Values
  - EFI_TEXTURE_MAP
```
private static final int EFI_TEXTURE_MAP
```
    See Also:
    
    Constant Field Values
  - EFI_STACK
```
private static final int EFI_STACK
```
    See Also:
    
    Constant Field Values
  - MACRO_IMAGE
```
private static final int MACRO_IMAGE
```
    See Also:
    
    Constant Field Values
  - DISPLAY_PROCESSOR_TYPE
```
private static final int DISPLAY_PROCESSOR_TYPE
```
    See Also:
    
    Constant Field Values
  - RENDER_OPERATION_ID
```
private static final int RENDER_OPERATION_ID
```
    See Also:
    
    Constant Field Values
  - DISPLAY_STACK_ID
```
private static final int DISPLAY_STACK_ID
```
    See Also:
    
    Constant Field Values
  - TRANSPARENCY_ID
```
private static final int TRANSPARENCY_ID
```
    See Also:
    
    Constant Field Values
  - THIRD_ID
```
private static final int THIRD_ID
```
    See Also:
    
    Constant Field Values
  - DISPLAY_VISIBLE
```
private static final int DISPLAY_VISIBLE
```
    See Also:
    
    Constant Field Values
  - TRANSPARENCY_VALUE
```
private static final int TRANSPARENCY_VALUE
```
    See Also:
    
    Constant Field Values
  - DISPLAY_LUT
```
private static final int DISPLAY_LUT
```
    See Also:
    
    Constant Field Values
  - DISPLAY_STACK_INDEX
```
private static final int DISPLAY_STACK_INDEX
```
    See Also:
    
    Constant Field Values
  - CHANNEL_TRANSPARENCY_VALUE
```
private static final int CHANNEL_TRANSPARENCY_VALUE
```
    See Also:
    
    Constant Field Values
  - CHANNEL_VISIBLE
```
private static final int CHANNEL_VISIBLE
```
    See Also:
    
    Constant Field Values
  - SELECTED_CHANNELS
```
private static final int SELECTED_CHANNELS
```
    See Also:
    
    Constant Field Values
  - DISPLAY_GAMMA_CORRECTION
```
private static final int DISPLAY_GAMMA_CORRECTION
```
    See Also:
    
    Constant Field Values
  - CHANNEL_GAMMA_CORRECTION
```
private static final int CHANNEL_GAMMA_CORRECTION
```
    See Also:
    
    Constant Field Values
  - DISPLAY_CONTRAST_BRIGHTNESS
```
private static final int DISPLAY_CONTRAST_BRIGHTNESS
```
    See Also:
    
    Constant Field Values
  - CHANNEL_CONTRAST_BRIGHTNESS
```
private static final int CHANNEL_CONTRAST_BRIGHTNESS
```
    See Also:
    
    Constant Field Values
  - ACTIVE_STACK_DIMENSION
```
private static final int ACTIVE_STACK_DIMENSION
```
    See Also:
    
    Constant Field Values
  - SELECTED_FRAMES
```
private static final int SELECTED_FRAMES
```
    See Also:
    
    Constant Field Values
  - DISPLAYED_LUT_ID
```
private static final int DISPLAYED_LUT_ID
```
    See Also:
    
    Constant Field Values
  - HIDDEN_LAYER
```
private static final int HIDDEN_LAYER
```
    See Also:
    
    Constant Field Values
  - LAYER_XY_FIXED
```
private static final int LAYER_XY_FIXED
```
    See Also:
    
    Constant Field Values
  - ACTIVE_LAYER_VECTOR
```
private static final int ACTIVE_LAYER_VECTOR
```
    See Also:
    
    Constant Field Values
  - ACTIVE_LAYER_INDEX_VECTOR
```
private static final int ACTIVE_LAYER_INDEX_VECTOR
```
    See Also:
    
    Constant Field Values
  - CHAINED_LAYERS
```
private static final int CHAINED_LAYERS
```
    See Also:
    
    Constant Field Values
  - LAYER_SELECTION
```
private static final int LAYER_SELECTION
```
    See Also:
    
    Constant Field Values
  - LAYER_SELECTION_INDEX
```
private static final int LAYER_SELECTION_INDEX
```
    See Also:
    
    Constant Field Values
  - CANVAS_COLOR_1
```
private static final int CANVAS_COLOR_1
```
    See Also:
    
    Constant Field Values
  - CANVAS_COLOR_2
```
private static final int CANVAS_COLOR_2
```
    See Also:
    
    Constant Field Values
  - ORIGINAL_FRAME_RATE
```
private static final int ORIGINAL_FRAME_RATE
```
    See Also:
    
    Constant Field Values
  - USE_ORIGINAL_FRAME_RATE
```
private static final int USE_ORIGINAL_FRAME_RATE
```
    See Also:
    
    Constant Field Values
  - ACTIVE_CHANNEL
```
private static final int ACTIVE_CHANNEL
```
    See Also:
    
    Constant Field Values
  - PLANE_UNIT
```
private static final int PLANE_UNIT
```
    See Also:
    
    Constant Field Values
  - Y_PLANE_DIMENSION_UNIT
```
private static final int Y_PLANE_DIMENSION_UNIT
```
    See Also:
    
    Constant Field Values
  - Y_DIMENSION_UNIT
```
private static final int Y_DIMENSION_UNIT
```
    See Also:
    
    Constant Field Values
  - PLANE_ORIGIN_RWC
```
private static final int PLANE_ORIGIN_RWC
```
    See Also:
    
    Constant Field Values
  - PLANE_SCALE_RWC
```
private static final int PLANE_SCALE_RWC
```
    See Also:
    
    Constant Field Values
  - CHANNEL_OVERFLOW
```
private static final int CHANNEL_OVERFLOW
```
    See Also:
    
    Constant Field Values
  - OBJECTIVE_MAG
```
private static final int OBJECTIVE_MAG
```
    See Also:
    
    Constant Field Values
  - NUMERICAL_APERTURE
```
private static final int NUMERICAL_APERTURE
```
    See Also:
    
    Constant Field Values
  - WORKING_DISTANCE
```
private static final int WORKING_DISTANCE
```
    See Also:
    
    Constant Field Values
  - OBJECTIVE_NAME
```
private static final int OBJECTIVE_NAME
```
    See Also:
    
    Constant Field Values
  - OBJECTIVE_TYPE
```
private static final int OBJECTIVE_TYPE
```
    See Also:
    
    Constant Field Values
  - REFRACTIVE_INDEX
```
private static final int REFRACTIVE_INDEX
```
    See Also:
    
    Constant Field Values
  - DEVICE_NAME
```
private static final int DEVICE_NAME
```
    See Also:
    
    Constant Field Values
  - DEVICE_ID
```
private static final int DEVICE_ID
```
    See Also:
    
    Constant Field Values
  - DEVICE_SUBTYPE
```
private static final int DEVICE_SUBTYPE
```
    See Also:
    
    Constant Field Values
  - DEVICE_MANUFACTURER
```
private static final int DEVICE_MANUFACTURER
```
    See Also:
    
    Constant Field Values
  - VALUE
```
private static final int VALUE
```
    See Also:
    
    Constant Field Values
  - usedFiles
```
private java.lang.String[] usedFiles
```
  - extraFiles
```
private java.util.ArrayList<java.lang.String> extraFiles
```
  - fileMap
```
private java.util.HashMap<java.lang.Integer,java.lang.String> fileMap
```
  - parser
```
private TiffParser parser
```
  - ifds
```
private IFDList ifds
```
  - tileOffsets
```
private java.util.ArrayList<java.lang.Long[]> tileOffsets
```
  - jpeg
```
private boolean jpeg
```
  - rows
```
private java.util.ArrayList<java.lang.Integer> rows
```
  - cols
```
private java.util.ArrayList<java.lang.Integer> cols
```
  - compressionType
```
private java.util.ArrayList<java.lang.Integer> compressionType
```
  - tileX
```
private java.util.ArrayList<java.lang.Integer> tileX
```
  - tileY
```
private java.util.ArrayList<java.lang.Integer> tileY
```
  - tileMap
```
private java.util.ArrayList<java.util.ArrayList<CellSensReader.TileCoordinate>> tileMap
```
  - nDimensions
```
private java.util.ArrayList<java.lang.Integer> nDimensions
```
  - inDimensionProperties
```
private boolean inDimensionProperties
```
  - foundChannelTag
```
private boolean foundChannelTag
```
  - dimensionTag
```
private int dimensionTag
```
  - backgroundColor
```
private java.util.HashMap<java.lang.Integer,byte[]> backgroundColor
```
  - metadataIndex
```
private int metadataIndex
```
  - previousTag
```
private int previousTag
```
  - pyramids
```
private java.util.ArrayList<CellSensReader.Pyramid> pyramids
```
  - bgr
```
private boolean[] bgr
```
  - expectETS
```
private transient boolean expectETS
```
  - channelCount
```
private transient int channelCount
```
  - zCount
```
private transient int zCount
```
- Constructor Detail
  - CellSensReader
```
public CellSensReader()
```
    Constructs a new cellSens reader.
- Method Detail
  - failOnMissingETS
```
public boolean failOnMissingETS()
```
  - fileGroupOption
```
public int fileGroupOption(java.lang.String id)
                    throws FormatException,
                           java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Returns an indication of whether the files in a multi-file dataset can be handled individually. This method is only useful for formats and datasets which contain multiple files.
    
    Specified by:
    
    fileGroupOption in interface IFormatReader
    
    Overrides:
    
    fileGroupOption in class FormatReader
    
    Parameters:
    
    id - a file in the multi-file dataset
    
    Returns:
    
    an int indicating that we cannot, must, or might group the files. A return value of FormatTools.MUST_GROUP indicates that the files cannot be handled separately; the reader will always detect and read all files in the dataset. FormatTools.CAN_GROUP indicates that the files may be handled separately, but file grouping must then be disabled via IFormatReader.setGroupFiles(boolean). FormatTools.CANNOT_GROUP indicates that the files must be handled separately; the reader will not attempt to read all files in the dataset (this is rare).
    
    Throws:
    
    FormatException
    
    java.io.IOException
    
    See Also:
    
    FormatTools.MUST_GROUP, FormatTools.CAN_GROUP, FormatTools.CANNOT_GROUP
  - isSingleFile
```
public boolean isSingleFile(java.lang.String id)
                     throws FormatException,
                            java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Returns true if the named file is expected to be the only file in the dataset. For single-file formats, always returns true.
    
    Specified by:
    
    isSingleFile in interface IFormatReader
    
    Overrides:
    
    isSingleFile in class FormatReader
    
    Throws:
    
    FormatException
    
    java.io.IOException
  - getSeriesUsedFiles
```
public java.lang.String[] getSeriesUsedFiles(boolean noPixels)
```
    Description copied from interface: IFormatReader
    
    Returns an array of filenames needed to open the current series. If the 'noPixels' flag is set, then only files that do not contain pixel data will be returned. The first element in the array is expected to be the path passed to IFormatHandler.setId(String), if appropriate based upon 'noPixels'. The remaining elements are expected to be in a consistent order; if a directory listing is necessary to build the list then it should be sorted first.
    
    Specified by:
    
    getSeriesUsedFiles in interface IFormatReader
    
    Overrides:
    
    getSeriesUsedFiles in class FormatReader
  - getOptimalTileWidth
```
public int getOptimalTileWidth()
```
    Description copied from interface: IFormatReader
    
    Returns the optimal sub-image width for use with openBytes.
    
    Specified by:
    
    getOptimalTileWidth in interface IFormatReader
    
    Overrides:
    
    getOptimalTileWidth in class FormatReader
  - getOptimalTileHeight
```
public int getOptimalTileHeight()
```
    Description copied from interface: IFormatReader
    
    Returns the optimal sub-image height for use with openBytes.
    
    Specified by:
    
    getOptimalTileHeight in interface IFormatReader
    
    Overrides:
    
    getOptimalTileHeight in class FormatReader
  - openThumbBytes
```
public byte[] openThumbBytes(int no)
                      throws FormatException,
                             java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Obtains a thumbnail for the specified image plane from the current file, as a byte array.
    
    Specified by:
    
    openThumbBytes in interface IFormatReader
    
    Overrides:
    
    openThumbBytes in class FormatReader
    
    Throws:
    
    FormatException
    
    java.io.IOException
  - openBytes
```
public byte[] openBytes(int no,
                        byte[] buf,
                        int x,
                        int y,
                        int w,
                        int h)
                 throws FormatException,
                        java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Obtains a sub-image of the specified image plane into a pre-allocated byte array.
    
    Specified by:
    
    openBytes in interface IFormatReader
    
    Specified by:
    
    openBytes in class FormatReader
    
    Parameters:
    
    no - the plane index within the current series.
    
    buf - a pre-allocated buffer.
    
    x - X coordinate of the upper-left corner of the sub-image
    
    y - Y coordinate of the upper-left corner of the sub-image
    
    w - width of the sub-image
    
    h - height of the sub-image
    
    Returns:
    
    the pre-allocated buffer buf for convenience.
    
    Throws:
    
    FormatException - if there was a problem parsing the metadata of the file.
    
    java.io.IOException - if there was a problem reading the file.
    
    See Also:
    
    IFormatReader.openBytes(int, byte[], int, int, int, int)
  - reopenFile
```
public void reopenFile()
                throws java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Reopen any files that were closed, and which are expected to be open while the reader is open. This assumes that IFormatHandler.setId(java.lang.String) has been called, but close(false) has not been called.
    
    Specified by:
    
    reopenFile in interface IFormatReader
    
    Overrides:
    
    reopenFile in class FormatReader
    
    Throws:
    
    java.io.IOException
  - close
```
public void close(boolean fileOnly)
           throws java.io.IOException
```
    Description copied from interface: IFormatReader
    
    Closes the currently open file. If the flag is set, this is all that happens; if unset, it is equivalent to calling Closeable.close().
    
    Specified by:
    
    close in interface IFormatReader
    
    Overrides:
    
    close in class FormatReader
    
    Throws:
    
    java.io.IOException
  - getAvailableOptions
```
protected java.util.ArrayList<java.lang.String> getAvailableOptions()
```
    Description copied from class: FormatReader
    
    Returns the list of available metadata options.
    
    Overrides:
    
    getAvailableOptions in class FormatReader
  - initFile
```
protected void initFile(java.lang.String id)
                 throws FormatException,
                        java.io.IOException
```
    Description copied from class: FormatReader
    
    Initializes the given file (parsing header information, etc.). Most subclasses should override this method to perform initialization operations such as parsing metadata.
    
    Overrides:
    
    initFile in class FormatReader
    
    Throws:
    
    FormatException - if a parsing error occurs processing the file.
    
    java.io.IOException - if an I/O error occurs processing the file
  - getTileSize
```
private int getTileSize()
```
    Get the expected decompressed size of a single tile, in bytes.
  - getCurrentPyramidIndex
```
private int getCurrentPyramidIndex()
```
    Get an index to the pyramid which contains the current series/resolution. Accounts for flattened resolutions as needed.
  - getCurrentPyramid
```
private CellSensReader.Pyramid getCurrentPyramid()
```
    Get an object representing the pyramid which contains the current series/resolution. Accounts for flattened resolutions as needed.
  - getResolutionIndex
```
private int getResolutionIndex()
```
    Get the current pyramid resolution, accounting for flattened resolutions as needed.
  - decodeTile
```
private byte[] decodeTile(int no,
                          int row,
                          int col)
                   throws FormatException,
                          java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException
  - parseETSFile
```
private boolean parseETSFile(loci.common.RandomAccessInputStream etsFile,
                             java.lang.String file,
                             int s,
                             boolean hasOrphanEtsFiles)
                      throws FormatException,
                             java.io.IOException
```
    Throws:
    
    FormatException
    
    java.io.IOException
  - convertPixelType
```
private int convertPixelType(int pixelType)
                      throws FormatException
```
    Throws:
    
    FormatException
  - readTags
```
private void readTags(loci.common.RandomAccessInputStream vsi,
                      boolean populateMetadata,
                      java.lang.String tagPrefix)
```
  - getVolumeName
```
private java.lang.String getVolumeName(int tag)
```
  - getTagName
```
private java.lang.String getTagName(int tag)
```
  - getDeviceSubtype
```
private java.lang.String getDeviceSubtype(java.lang.String type)
```
  - getStackType
```
private java.lang.String getStackType(java.lang.String type)
```
  - getIFDIndex
```
private int getIFDIndex()
```

Class CellSensReader

Nested Class Summary

Field Summary

Fields inherited from class loci.formats.FormatReader

Fields inherited from class loci.formats.FormatHandler

Fields inherited from interface loci.formats.IFormatReader

Constructor Summary

Method Summary

Methods inherited from class loci.formats.FormatReader

Methods inherited from class loci.formats.FormatHandler

Methods inherited from class java.lang.Object

Methods inherited from interface loci.formats.IFormatHandler

Methods inherited from interface loci.formats.IMetadataConfigurable

Methods inherited from interface loci.formats.ICompressedTileReader

Field Detail

FAIL_ON_MISSING_KEY

FAIL_ON_MISSING_DEFAULT

RAW

JPEG

JPEG_2000

JPEG_LOSSLESS

PNG

BMP

CHAR

UCHAR

SHORT

USHORT

INT

UINT

LONG

ULONG

FLOAT

DOUBLE

COMPLEX

BOOLEAN

TCHAR

DWORD

TIMESTAMP

DATE

INT_2

INT_3

INT_4

INT_RECT

DOUBLE_2

DOUBLE_3

DOUBLE_4

DOUBLE_RECT

DOUBLE_2_2

DOUBLE_3_3

DOUBLE_4_4

INT_INTERVAL

DOUBLE_INTERVAL

RGB

BGR

FIELD_TYPE

MEM_MODEL

COLOR_SPACE

INT_ARRAY_2

INT_ARRAY_3

INT_ARRAY_4

INT_ARRAY_5

DOUBLE_ARRAY_2

DOUBLE_ARRAY_3

UNICODE_TCHAR

DIM_INDEX_1

DIM_INDEX_2

VOLUME_INDEX

PIXEL_INFO_TYPE

NEW_VOLUME_HEADER

PROPERTY_SET_VOLUME

NEW_MDIM_VOLUME_HEADER

TIFF_IFD

VECTOR_DATA

COLLECTION_VOLUME

MULTIDIM_IMAGE_VOLUME

IMAGE_FRAME_VOLUME

DIMENSION_SIZE

IMAGE_COLLECTION_PROPERTIES

MULTIDIM_STACK_PROPERTIES

FRAME_PROPERTIES