Uses of Class
loci.formats.CoreMetadata

Packages that use CoreMetadata

Package	Description
loci.formats	Bio-Formats: a library for reading and writing popular microscopy file formats.
loci.formats.dicom
loci.formats.in	Package containing Bio-Formats file format readers.
loci.formats.in.LeicaMicrosystemsMetadata
loci.formats.services
loci.formats.tools	Package containing utility methods corresponding to the Bio-Formats command line tools.

Uses of CoreMetadata in loci.formats

Subclasses of CoreMetadata in loci.formats

Modifier and Type	Class and Description
class	SwappableMetadata Extends CoreMetadata to include the notion of an "input order" for planes: the input order being the order planes are stored on disk.

Fields in loci.formats with type parameters of type CoreMetadata

Modifier and Type	Field and Description
(package private) static java.util.Comparator<CoreMetadata>	CoreMetadataList.comparator
private java.util.ArrayList<CoreMetadata>	FileStitcher.core Core metadata.
private java.util.List<CoreMetadata>	DimensionSwapper.core Core metadata associated with this dimension swapper.
protected java.util.List<CoreMetadata>	FormatReader.core Core metadata values.

Methods in loci.formats that return CoreMetadata

Modifier and Type	Method and Description
CoreMetadata	SwappableMetadata.clone(IFormatReader r, int coreIndex)
CoreMetadata	CoreMetadata.clone(IFormatReader r, int coreIndex)
protected CoreMetadata	SubResolutionFormatReader.getCurrentCore() Get the CoreMetadata corresponding to the current series and resolution
protected CoreMetadata	FormatReader.getCurrentCore() Get the CoreMetadata corresponding to the current series and resolution

Methods in loci.formats that return types with arguments of type CoreMetadata

Modifier and Type	Method and Description
java.util.List<CoreMetadata>	FileStitcher.getCoreMetadataList()
java.util.List<CoreMetadata>	DimensionSwapper.getCoreMetadataList()
java.util.List<CoreMetadata>	WrappedReader.getCoreMetadataList()
java.util.List<CoreMetadata>	SubResolutionFormatReader.getCoreMetadataList()
java.util.List<CoreMetadata>	ReaderWrapper.getCoreMetadataList()
java.util.List<CoreMetadata>	ImageReader.getCoreMetadataList()
java.util.List<CoreMetadata>	IFormatReader.getCoreMetadataList() Deprecated. Reader internals should not be accessed by reader users
java.util.List<CoreMetadata>	FormatReader.getCoreMetadataList()
java.util.List<CoreMetadata>	CoreMetadataList.getFlattenedList()
java.util.List<CoreMetadata>	CoreMetadataList.getSeriesList()

Methods in loci.formats with parameters of type CoreMetadata

Modifier and Type	Method and Description
void	CoreMetadataList.add(int i1, CoreMetadata value) Add a secondary array element to the specified primary array
static void	MetadataTools.populateMetadata(MetadataStore store, int series, java.lang.String imageName, CoreMetadata coreMeta) Populates the given MetadataStore, for the specified series, using the values from the provided CoreMetadata.

Method parameters in loci.formats with type arguments of type CoreMetadata

Modifier and Type	Method and Description
void	CoreMetadataList.setFlattenedList(java.util.List<CoreMetadata> list)

Constructors in loci.formats with parameters of type CoreMetadata

Constructor and Description
CoreMetadata(CoreMetadata c)

Constructor parameters in loci.formats with type arguments of type CoreMetadata

Constructor and Description
CoreMetadataList(java.util.List<CoreMetadata> list)

Uses of CoreMetadata in loci.formats.dicom

Fields in loci.formats.dicom declared as CoreMetadata

Modifier and Type	Field and Description
CoreMetadata	DicomFileInfo.coreMetadata

Uses of CoreMetadata in loci.formats.in

Subclasses of CoreMetadata in loci.formats.in

Modifier and Type	Class and Description
private class	OMETiffReader.OMETiffCoreMetadata
(package private) class	SVSCoreMetadata

Fields in loci.formats.in declared as CoreMetadata

Modifier and Type	Field and Description
CoreMetadata	VolocityReader.Stack.core

Fields in loci.formats.in with type parameters of type CoreMetadata

Modifier and Type	Field and Description
private java.util.List<CoreMetadata>	LeicaHandler.core

Methods in loci.formats.in that return types with arguments of type CoreMetadata

Modifier and Type	Method and Description
java.util.List<CoreMetadata>	LeicaHandler.getCoreMetadataList()
java.util.List<CoreMetadata>	FilePatternReader.getCoreMetadataList()

Methods in loci.formats.in with parameters of type CoreMetadata

Modifier and Type	Method and Description
private void	ZeissCZIReader.convertPixelType(CoreMetadata ms0, int pixelType)
private void	KLBReader.convertPixelType(CoreMetadata ms0, int pixelType)
private void	KLBReader.readHeader(CoreMetadata coreMeta)
private void	DicomReader.updateCoreMetadata(CoreMetadata ms)

Constructors in loci.formats.in with parameters of type CoreMetadata

Constructor and Description
OMETiffCoreMetadata(CoreMetadata copy)

Uses of CoreMetadata in loci.formats.in.LeicaMicrosystemsMetadata

Methods in loci.formats.in.LeicaMicrosystemsMetadata that return types with arguments of type CoreMetadata

Modifier and Type	Method and Description
java.util.List<CoreMetadata>	LMSFileReader.getCore()

Methods in loci.formats.in.LeicaMicrosystemsMetadata with parameters of type CoreMetadata

Modifier and Type	Method and Description
void	MultipleImagesReader.setCoreMetadata(CoreMetadata cmd)

Method parameters in loci.formats.in.LeicaMicrosystemsMetadata with type arguments of type CoreMetadata

Modifier and Type	Method and Description
void	LMSFileReader.setCore(java.util.ArrayList<CoreMetadata> core)

Uses of CoreMetadata in loci.formats.services

Methods in loci.formats.services with parameters of type CoreMetadata

Modifier and Type	Method and Description
void	OMEXMLServiceImpl.addModuloAlong(OMEXMLMetadata meta, CoreMetadata core, int imageIdx)
void	OMEXMLService.addModuloAlong(OMEXMLMetadata omexmlMeta, CoreMetadata core, int image) Adds ModuloAlong* annotations to the given OME-XML metadata object, using the given CoreMetadata object to determine modulo dimensions.

Uses of CoreMetadata in loci.formats.tools

Methods in loci.formats.tools with parameters of type CoreMetadata

Modifier and Type	Method and Description
private IMetadata	MakeTestOmeTiff.createMetadata(java.lang.String name, CoreMetadata info)
private java.awt.image.BufferedImage	MakeTestOmeTiff.createPlane(java.lang.String name, CoreMetadata info, int no)
private OMETiffWriter	MakeTestOmeTiff.createWriter(java.lang.String name, CoreMetadata info, java.lang.String id)
void	MakeTestOmeTiff.makeOmeTiff(java.lang.String name, CoreMetadata info)
private void	MakeTestOmeTiff.writeData(java.lang.String name, CoreMetadata info, java.lang.String id, OMETiffWriter out)