PrairieMetadata.Frame (Bio-Formats API)

java.lang.Object
- loci.formats.in.PrairieMetadata.Frame

Enclosing class:

PrairieMetadata
```
public class PrairieMetadata.Frame
extends java.lang.Object
```
A Prairie <Frame>, beneath a <Sequence>.

Field Summary

Fields
Modifier and Type	Field and Description
`private java.lang.Double`	`absoluteTime` `absoluteTime` attribute of this `<Frame>`.
`private java.util.HashMap<java.lang.Integer,PrairieMetadata.PFile>`	`files` `<File>` elements beneath this `<Frame>`, keyed on each file's `channel`.
`private PrairieMetadata.PFile`	`firstFile` The first actual `<File>` element for this `<Frame>`.
`private PrairieMetadata.ValueTable`	`frameValues` Table of key/value pairs for this `<Frame>`.
`private java.lang.Integer`	`index` `index` of this `<Frame>`.
`private java.lang.Double`	`relativeTime` `relativeTime` attribute of this `<Frame>`.
`private PrairieMetadata.Sequence`	`sequence` The `<Sequence>` containing this `<Frame>`.

Constructor Summary

Constructors
Constructor and Description

Frame(PrairieMetadata.Sequence sequence, org.w3c.dom.Element frameElement)
Creates a new frame by parsing the given <Frame> element.

Constructors
Constructor and Description
`Frame(PrairieMetadata.Sequence sequence, org.w3c.dom.Element frameElement)` Creates a new frame by parsing the given `<Frame>` element.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`double`	`getAbsoluteTime()` Gets the `absoluteTime` associated with this `Frame`.
`PrairieMetadata.PFile`	`getFile(int channel)` Gets the `File` with the given `channel`.
`PrairieMetadata.PFile`	`getFirstFile()` Gets the first `File` of the `Sequence`.
`java.lang.Double`	`getGain(int c)` Gets the `c`th gain for this `Frame`.
`java.lang.String`	`getImagingDevice()` Gets the imaging device associated with this `Frame`.
`java.lang.String`	`getImmersion()` Extracts the immersion from the objective lens string.
`int`	`getIndex()` Gets the `index` associated with this `Frame`.
`java.lang.Integer`	`getLinesPerFrame()` Gets the lines per frame for this `Frame`.
`java.lang.Double`	`getMagnification()` Extracts the magnification from the objective lens string.
`java.lang.Double`	`getMicronsPerPixelX()` Gets the microns per pixel along X for this `Frame`.
`java.lang.Double`	`getMicronsPerPixelY()` Gets the microns per pixel along Y for this `Frame`.
`java.lang.String`	`getObjectiveLens()` Gets the objective lens string for this `Frame`.
`java.lang.Double`	`getObjectiveLensNA()` Gets the numerical aperture of the lens for this `Frame`.
`java.lang.String`	`getObjectiveManufacturer()` Extracts the objective manufacturer from the objective lens string.
`java.lang.Double`	`getOffset(int c)` Gets the `c`th offset for this `Frame`.
`java.lang.Double`	`getOpticalZoom()` Gets the optical zoom associated with this `Frame`.
`java.lang.Integer`	`getPixelsPerLine()` Gets the pixels per line for this `Frame`.
`ome.units.quantity.Length`	`getPositionX()` Gets the X stage position associated with this `Frame`.
`ome.units.quantity.Length`	`getPositionY()` Gets the Y stage position associated with this `Frame`.
`ome.units.quantity.Length`	`getPositionZ()` Gets the Z stage position associated with this `Frame`.
`double`	`getRelativeTime()` Gets the `relativeTime` associated with this `Frame`.
`PrairieMetadata.Sequence`	`getSequence()` Gets the `<Sequence>` containing this `<Frame>`.
`PrairieMetadata.Value`	`getValue(java.lang.String key)` Gets the `value` of the given `key`, beneath this `Frame`, inferring the value from the parent `<Sequence>` or grandparent `<PVScan>` section as needed.
`PrairieMetadata.ValueTable`	`getValues()` Gets the table of `Frame` key/value pairs.
`void`	`parse(org.w3c.dom.Element frameElement)` Parses metadata from the given `Frame` element.
`private ome.units.quantity.Length`	`toLength(java.lang.Double position, boolean isInvert)` Convert a position number to a length in the microscope reference frame.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - sequence
```
private PrairieMetadata.Sequence sequence
```
    The <Sequence> containing this <Frame>.
  - files
```
private final java.util.HashMap<java.lang.Integer,PrairieMetadata.PFile> files
```
    <File> elements beneath this <Frame>, keyed on each file's channel.
  - frameValues
```
private final PrairieMetadata.ValueTable frameValues
```
    Table of key/value pairs for this <Frame>.
  - firstFile
```
private PrairieMetadata.PFile firstFile
```
    The first actual <File> element for this <Frame>.
  - relativeTime
```
private java.lang.Double relativeTime
```
    relativeTime attribute of this <Frame>.
  - absoluteTime
```
private java.lang.Double absoluteTime
```
    absoluteTime attribute of this <Frame>.
  - index
```
private java.lang.Integer index
```
    index of this <Frame>.
- Constructor Detail
  - Frame
```
public Frame(PrairieMetadata.Sequence sequence,
             org.w3c.dom.Element frameElement)
```
    Creates a new frame by parsing the given <Frame> element.
- Method Detail
  - getSequence
```
public PrairieMetadata.Sequence getSequence()
```
    Gets the <Sequence> containing this <Frame>.
  - parse
```
public void parse(org.w3c.dom.Element frameElement)
```
    Parses metadata from the given Frame element.
  - getRelativeTime
```
public double getRelativeTime()
```
    Gets the relativeTime associated with this Frame.
  - getAbsoluteTime
```
public double getAbsoluteTime()
```
    Gets the absoluteTime associated with this Frame.
  - getIndex
```
public int getIndex()
```
    Gets the index associated with this Frame.
  - getFirstFile
```
public PrairieMetadata.PFile getFirstFile()
```
    Gets the first File of the Sequence.
  - getFile
```
public PrairieMetadata.PFile getFile(int channel)
```
    Gets the File with the given channel.
  - getObjectiveLens
```
public java.lang.String getObjectiveLens()
```
    Gets the objective lens string for this Frame.
  - getObjectiveManufacturer
```
public java.lang.String getObjectiveManufacturer()
```
    Extracts the objective manufacturer from the objective lens string.
  - getMagnification
```
public java.lang.Double getMagnification()
```
    Extracts the magnification from the objective lens string.
  - getImmersion
```
public java.lang.String getImmersion()
```
    Extracts the immersion from the objective lens string.
  - getObjectiveLensNA
```
public java.lang.Double getObjectiveLensNA()
```
    Gets the numerical aperture of the lens for this Frame.
  - getPixelsPerLine
```
public java.lang.Integer getPixelsPerLine()
```
    Gets the pixels per line for this Frame.
  - getLinesPerFrame
```
public java.lang.Integer getLinesPerFrame()
```
    Gets the lines per frame for this Frame.
  - toLength
```
private ome.units.quantity.Length toLength(java.lang.Double position,
                                           boolean isInvert)
```
    Convert a position number to a length in the microscope reference frame.
    
    Parameters:
    
    position - a position number, may be null
    
    isInvert - if the number's sign should be flipped
    
    Returns:
    
    a length corresponding to the number, may be null
  - getPositionX
```
public ome.units.quantity.Length getPositionX()
```
    Gets the X stage position associated with this Frame.
  - getPositionY
```
public ome.units.quantity.Length getPositionY()
```
    Gets the Y stage position associated with this Frame.
  - getPositionZ
```
public ome.units.quantity.Length getPositionZ()
```
    Gets the Z stage position associated with this Frame.
  - getOpticalZoom
```
public java.lang.Double getOpticalZoom()
```
    Gets the optical zoom associated with this Frame.
  - getMicronsPerPixelX
```
public java.lang.Double getMicronsPerPixelX()
```
    Gets the microns per pixel along X for this Frame.
  - getMicronsPerPixelY
```
public java.lang.Double getMicronsPerPixelY()
```
    Gets the microns per pixel along Y for this Frame.
  - getOffset
```
public java.lang.Double getOffset(int c)
```
    Gets the cth offset for this Frame.
    
    Parameters:
    
    c - The 0-based(!) channel index for which to obtain the offset.
  - getGain
```
public java.lang.Double getGain(int c)
```
    Gets the cth gain for this Frame.
    
    Parameters:
    
    c - The 0-based(!) channel index for which to obtain the gain.
  - getImagingDevice
```
public java.lang.String getImagingDevice()
```
    Gets the imaging device associated with this Frame.
  - getValue
```
public PrairieMetadata.Value getValue(java.lang.String key)
```
    Gets the value of the given key, beneath this Frame, inferring the value from the parent <Sequence> or grandparent <PVScan> section as needed.
  - getValues
```
public PrairieMetadata.ValueTable getValues()
```
    Gets the table of Frame key/value pairs.

Class PrairieMetadata.Frame

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

sequence

files

frameValues

firstFile

relativeTime

absoluteTime

index

Constructor Detail

Frame

Method Detail

getSequence

parse

getRelativeTime

getAbsoluteTime

getIndex

getFirstFile

getFile

getObjectiveLens

getObjectiveManufacturer

getMagnification

getImmersion

getObjectiveLensNA

getPixelsPerLine

getLinesPerFrame

toLength

getPositionX

getPositionY

getPositionZ

getOpticalZoom

getMicronsPerPixelX

getMicronsPerPixelY

getOffset

getGain

getImagingDevice

getValue

getValues