loci.formats.in.LeicaMicrosystemsMetadata

Class MetadataStoreInitializer

java.lang.Object

loci.formats.in.LeicaMicrosystemsMetadata.MetadataStoreInitializer

public class MetadataStoreInitializer
extends java.lang.Object

This class initializes the MetadataStore of a given LMSFileReader, using its MetadataTempBuffer

Author:

Melissa Linkert melissa at glencoesoftware.com, Constanze Wendlandt constanze.wendlandt at leica-microsystems.com

Field Summary

Fields

Modifier and Type	Field and Description
private int	nextChannel
private LMSFileReader	r
(package private) MetadataStore	store

Constructor Summary

Constructors

Constructor and Description
MetadataStoreInitializer(LMSFileReader reader)

Method Summary

Modifier and Type	Method and Description
ome.units.quantity.Length	checkFlip(boolean flip, ome.units.quantity.Length pos)
int	getTileIndex(int coreIndex)
void	initDetectorModels(int series) Adds detector and channel color details from the reader's MetadataTempBuffer to its MetadataStore
void	initFilterModels(int series) Adds filter details from the reader's MetadataTempBuffer to its MetadataStore
void	initImageDetails(int series) Adds image and ROI details from the reader's MetadataTempBuffer to its MetadataStore
void	initLasers(int series) Adds laser and light source details from the reader's MetadataTempBuffer to its MetadataStore
void	initMetadataStore() Translates metadata information from the reader's MetadataTempBuffer and adds it to its MetadataStore
void	initStandDetails(int series) Adds microscope and objective details from the reader's MetadataTempBuffer to its MetadataStore

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

r

private LMSFileReader r

store

MetadataStore store

nextChannel

private int nextChannel

Constructor Detail

MetadataStoreInitializer

public MetadataStoreInitializer(LMSFileReader reader)

Method Detail

initStandDetails

public void initStandDetails(int series)
                      throws FormatException

Adds microscope and objective details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initFilterModels

public void initFilterModels(int series)

Adds filter details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initLasers

public void initLasers(int series)

Adds laser and light source details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initDetectorModels

public void initDetectorModels(int series)

Adds detector and channel color details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initImageDetails

public void initImageDetails(int series)

Adds image and ROI details from the reader's MetadataTempBuffer to its MetadataStore

Parameters:

series - index of image series / metadata store

Throws:

FormatException

initMetadataStore

public void initMetadataStore()
                       throws FormatException,
                              java.io.IOException

Translates metadata information from the reader's MetadataTempBuffer and adds it to its MetadataStore

Throws:

FormatException

java.io.IOException

getTileIndex

public int getTileIndex(int coreIndex)

checkFlip

public ome.units.quantity.Length checkFlip(boolean flip,
                                           ome.units.quantity.Length pos)