Package | Description |
---|---|
loci.formats.in |
Package containing Bio-Formats file format readers.
|
Modifier and Type | Field and Description |
---|---|
private PrairieMetadata.Sequence |
PrairieMetadata.firstSequence
The first actual
<Sequence> element. |
private PrairieMetadata.Sequence |
PrairieMetadata.Frame.sequence
The
<Sequence> containing this <Frame> . |
Modifier and Type | Field and Description |
---|---|
private java.util.ArrayList<PrairieMetadata.Sequence> |
PrairieReader.sequences
List of Prairie metadata
Sequence s, ordered by cycle. |
private java.util.HashMap<java.lang.Integer,PrairieMetadata.Sequence> |
PrairieMetadata.sequences
<Sequence> elements, keyed on each sequence's cycle . |
Modifier and Type | Method and Description |
---|---|
PrairieMetadata.Sequence |
PrairieMetadata.getFirstSequence()
Gets the first
Sequence . |
PrairieMetadata.Sequence |
PrairieMetadata.Frame.getSequence()
Gets the
<Sequence> containing this <Frame> . |
PrairieMetadata.Sequence |
PrairieMetadata.getSequence(int cycle)
Gets the
Sequence at the given cycle . |
private PrairieMetadata.Sequence |
PrairieReader.sequence(int s)
Gets the first sequence associated with the given series.
|
private PrairieMetadata.Sequence |
PrairieReader.sequence(int t,
int s)
Gets the sequence associated with the given series and time point.
|
private PrairieMetadata.Sequence |
PrairieReader.sequence(int t,
int p,
int sizeP)
Gets the sequence associated with the given time point and stage position.
|
Modifier and Type | Method and Description |
---|---|
java.util.ArrayList<PrairieMetadata.Sequence> |
PrairieMetadata.getSequences()
Gets all
Sequences , ordered by cycle . |
Modifier and Type | Method and Description |
---|---|
private int |
PrairieReader.frameIndex(PrairieMetadata.Sequence sequence,
int z,
int t,
int s)
Gets the frame index associated with the given (Z, T) position of the
specified series.
|
private void |
PrairieReader.warnFile(PrairieMetadata.Sequence sequence,
int index,
int channel)
Emits a warning about a missing
<File> . |
private void |
PrairieReader.warnFilename(PrairieMetadata.Sequence sequence,
int index,
int channel)
Emits a warning about a
<File> 's missing filename . |
private void |
PrairieReader.warnFrame(PrairieMetadata.Sequence sequence,
int index)
Emits a warning about a missing
<Frame> . |
Constructor and Description |
---|
Frame(PrairieMetadata.Sequence sequence,
org.w3c.dom.Element frameElement)
Creates a new frame by parsing the given
<Frame> element. |
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