| Package | Description | 
|---|---|
| loci.formats | Bio-Formats: a library for reading and writing popular microscopy file
formats. | 
| loci.formats.gui | Package containing Bio-Formats graphical user interface code. | 
| loci.formats.in | Package containing Bio-Formats file format readers. | 
| loci.plugins.util | Utility classes and methods for the Bio-Formats plugins for ImageJ. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | ChannelFillerFor indexed color data representing true color, factors out
 the indices, replacing them with the color table values directly. | 
| class  | ChannelMergerLogic to automatically merge channels in a file. | 
| class  | ChannelSeparatorLogic to automatically separate the channels in a file. | 
| class  | DimensionSwapperHandles swapping the dimension order of an image series. | 
| class  | FileStitcherLogic to stitch together files with similar names. | 
| class  | MemoizerReaderWrapperimplementation which caches the state of the
 delegate (including and otherReaderWrapperinstances)
 afterMemoizer.setId(String)has been called. | 
| class  | MinMaxCalculatorLogic to compute minimum and maximum values for each channel. | 
| class  | TileStitcher | 
| Modifier and Type | Method and Description | 
|---|---|
| ReaderWrapper | ReaderWrapper. duplicate(java.lang.Class<? extends IFormatReader> imageReaderClass)Performs a deep copy of the reader, including nested wrapped readers. | 
| private ReaderWrapper | ReaderWrapper. duplicateRecurse(java.lang.Class<? extends IFormatReader> imageReaderClass) | 
| protected abstract ReaderWrapper | WrappedReader. getHelper()Get the helper class that reads images | 
| Modifier and Type | Method and Description | 
|---|---|
| protected void | WrappedReader. callDeferredSetters(ReaderWrapper helper)A helper may not exist before initFile() is called. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | BufferedImageReaderA reader wrapper for reading image planes as BufferedImage objects. | 
| Modifier and Type | Method and Description | 
|---|---|
| protected ReaderWrapper | FilePatternReader. getHelper() | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | ImageProcessorReaderA low-level reader for  ImageProcessorobjects. | 
| class  | VirtualReaderTODO | 
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