| Package | Description | 
|---|---|
| loci.formats | Bio-Formats: a library for reading and writing popular microscopy file
formats. | 
| loci.formats.gui | Package containing Bio-Formats graphical user interface code. | 
| loci.formats.out | Package containing Bio-Formats file format writers. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | FormatWriterAbstract superclass of all biological file format writers. | 
| class  | ImageWriterImageWriter is the master file format writer for all supported formats. | 
| class  | WriterWrapperAbstract superclass of writer logic that wraps other writers. | 
| Modifier and Type | Field and Description | 
|---|---|
| protected IFormatWriter | WriterWrapper. writerFormatWriter used to write the file. | 
| protected IFormatWriter[] | ImageWriter. writersList of supported file format writers. | 
| Modifier and Type | Field and Description | 
|---|---|
| private static ClassList<IFormatWriter> | ImageWriter. defaultClassesDefault list of writer classes, for use with noargs constructor. | 
| Modifier and Type | Method and Description | 
|---|---|
| IFormatWriter | WriterWrapper. getWriter()Gets the wrapped writer. | 
| IFormatWriter | ImageWriter. getWriter()Gets the writer used to save the current file. | 
| IFormatWriter | ImageWriter. getWriter(java.lang.Class<? extends IFormatWriter> c)Gets the file format writer instance matching the given class. | 
| IFormatWriter | ImageWriter. getWriter(java.lang.String id)Gets the writer used to save the given file. | 
| IFormatWriter[] | ImageWriter. getWriters()Gets all constituent file format writers. | 
| IFormatWriter | WriterWrapper. unwrap()Unwraps nested wrapped writers until the core writer (i.e., not
 a  WriterWrapperorImageWriter) is found. | 
| IFormatWriter | WriterWrapper. unwrap(java.lang.Class<? extends IFormatWriter> writerClass,
      java.lang.String id)Unwraps nested wrapped writers until the given writer class is found. | 
| IFormatWriter | WriterWrapper. unwrap(java.lang.String id)Unwraps nested wrapped writers until the core writer (i.e., not
 a  WriterWrapperorImageWriter) is found. | 
| Modifier and Type | Method and Description | 
|---|---|
| static ClassList<IFormatWriter> | ImageWriter. getDefaultWriterClasses() | 
| Modifier and Type | Method and Description | 
|---|---|
| static void | FormatTools. convert(IFormatReader input,
       IFormatWriter output,
       java.lang.String outputFile)Convenience method for writing all of the images and metadata obtained
 from the specified IFormatReader into the specified IFormatWriter. | 
| Modifier and Type | Method and Description | 
|---|---|
| WriterWrapper | WriterWrapper. duplicate(java.lang.Class<? extends IFormatWriter> imageWriterClass)Performs a deep copy of the writer, including nested wrapped writers. | 
| private WriterWrapper | WriterWrapper. duplicateRecurse(java.lang.Class<? extends IFormatWriter> imageWriterClass) | 
| IFormatWriter | ImageWriter. getWriter(java.lang.Class<? extends IFormatWriter> c)Gets the file format writer instance matching the given class. | 
| IFormatWriter | WriterWrapper. unwrap(java.lang.Class<? extends IFormatWriter> writerClass,
      java.lang.String id)Unwraps nested wrapped writers until the given writer class is found. | 
| Constructor and Description | 
|---|
| WriterWrapper(IFormatWriter w)Constructs a writer wrapper around the given writer. | 
| Constructor and Description | 
|---|
| ImageWriter(ClassList<IFormatWriter> classList)Constructs a new ImageWriter from the given list of writer classes. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | BufferedImageWriterA writer wrapper for writing image planes from BufferedImage objects. | 
| Modifier and Type | Field and Description | 
|---|---|
| protected IFormatWriter | ImageViewer. fileWriterWriter for files on disk. | 
| Modifier and Type | Method and Description | 
|---|---|
| static BufferedImageWriter | BufferedImageWriter. makeBufferedImageWriter(IFormatWriter w)Converts the given writer into a BufferedImageWriter, wrapping if needed. | 
| protected void | ImageViewer. save(java.lang.String id,
    IFormatWriter w)Saves to the given data destination using the specified writer
 in a separate thread. | 
| static byte[] | BufferedImageWriter. toBytes(java.awt.image.BufferedImage image,
       IFormatWriter writer) | 
| Constructor and Description | 
|---|
| BufferedImageWriter(IFormatWriter r)Constructs a BufferedImageWriter with the given writer. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | APNGWriterAPNGWriter is the file format writer for PNG and APNG files. | 
| class  | AVIWriterAVIWriter is the file format writer for AVI files. | 
| class  | CellH5WriterCellH5Writer is the file format writer for CellH5 format. | 
| class  | EPSWriterEPSWriter is the file format writer for Encapsulated PostScript (EPS) files. | 
| class  | ICSWriterICSWriter is the file format writer for ICS files. | 
| class  | ImageIOWriterImageIOWriter is the superclass for file format writers that use the
 javax.imageio library. | 
| class  | JavaWriterJavaWriter is the file format writer for Java source code. | 
| class  | JPEG2000WriterJPEG2000Writer is the file format writer for JPEG2000 files. | 
| class  | JPEGWriterJPEGWriter is the file format writer for JPEG files. | 
| class  | LegacyQTWriterLegacyQTWriter is a file format writer for QuickTime movies. | 
| class  | OMETiffWriterOMETiffWriter is the file format writer for OME-TIFF files. | 
| class  | OMEXMLWriterOMEXMLWriter is the file format writer for OME-XML files. | 
| class  | QTWriterQTWriter is the file format writer for uncompressed QuickTime movie files. | 
| class  | TiffWriterTiffWriter is the file format writer for TIFF files. | 
| class  | V3DrawWriterV3DrawWriter writes images in the .v3draw format for rapid I/O in Vaa3D, an open-source 3D visualization and
 analysis toolkit. | 
| class  | WlzWriterWlzWriter is the file format writer for Woolz files. | 
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