loci.formats.codec

Class WrappedCodec

java.lang.Object

loci.formats.codec.BaseCodec

loci.formats.codec.WrappedCodec

All Implemented Interfaces:

Codec

Direct Known Subclasses:

Base64Codec, HuffmanCodec, JPEG2000Codec, JPEGCodec, LosslessJPEGCodec, LuraWaveCodec, LZOCodec, LZWCodec, MJPBCodec, MSRLECodec, MSVideoCodec, PackbitsCodec, PassthroughCodec, QTRLECodec, RPZACodec, ZlibCodec

class WrappedCodec
extends BaseCodec

Generic wrapper for codecs from ome-codecs. Individual wrapper codec classes should extend this class and pass the class to wrap to the constructor.

Field Summary

Fields

Modifier and Type	Field and Description
protected ome.codecs.Codec	codec

Fields inherited from class loci.formats.codec.BaseCodec

LOGGER

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	WrappedCodec(ome.codecs.Codec codec) Construct with a codec implementation to wrap.

Method Summary

Modifier and Type	Method and Description
byte[]	compress(byte[][] data, CodecOptions options) 2D data block encoding default implementation.
byte[]	compress(byte[] data, CodecOptions options) Compresses a block of data.
private static void	copyOptions(CodecOptions src, ome.codecs.CodecOptions dest)
byte[]	decompress(byte[] data) Decompresses a block of data.
byte[]	decompress(byte[][] data) Decompresses a block of data.
byte[]	decompress(byte[][] data, CodecOptions options) 2D data block decoding default implementation.
byte[]	decompress(byte[] data, CodecOptions options) Decompresses a block of data.
byte[]	decompress(loci.common.RandomAccessInputStream in, CodecOptions options) Decompresses data from the given RandomAccessInputStream.
protected static ome.codecs.CodecOptions	getOptions(CodecOptions options)
(package private) static FormatException	unwrapCodecException(ome.codecs.CodecException e)

Methods inherited from class loci.formats.codec.BaseCodec

test

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

codec

protected ome.codecs.Codec codec

Constructor Detail

WrappedCodec

protected WrappedCodec(ome.codecs.Codec codec)

Construct with a codec implementation to wrap.

Parameters:

codec - the codec to wrap.

Method Detail

compress

public byte[] compress(byte[] data,
                       CodecOptions options)
                throws FormatException

Description copied from interface: Codec

Compresses a block of data.

Parameters:

data - The data to be compressed.

options - Options to be used during compression, if appropriate.

Returns:

The compressed data.

Throws:

FormatException - If input is not a compressed data block of the appropriate type.

compress

public byte[] compress(byte[][] data,
                       CodecOptions options)
                throws FormatException

Description copied from class: BaseCodec

2D data block encoding default implementation. This method simply concatenates data[0] + data[1] + ... + data[i] into a 1D block of data, then calls the 1D version of compress.

Specified by:

compress in interface Codec

Overrides:

compress in class BaseCodec

Parameters:

data - The data to be compressed.

options - Options to be used during compression, if appropriate.

Returns:

The compressed data.

Throws:

FormatException - If input is not a compressed data block of the appropriate type.

decompress

public byte[] decompress(byte[] data,
                         CodecOptions options)
                  throws FormatException

Description copied from interface: Codec

Decompresses a block of data.

Specified by:

decompress in interface Codec

Overrides:

decompress in class BaseCodec

Parameters:

data - the data to be decompressed

options - Options to be used during decompression.

Returns:

the decompressed data.

Throws:

FormatException - If data is not valid.

decompress

public byte[] decompress(byte[][] data,
                         CodecOptions options)
                  throws FormatException

Description copied from class: BaseCodec

2D data block decoding default implementation. This method simply concatenates data[0] + data[1] + ... + data[i] into a 1D block of data, then calls the 1D version of decompress.

Specified by:

decompress in interface Codec

Overrides:

decompress in class BaseCodec

Parameters:

data - The data to be decompressed.

options - Options to be used during decompression.

Returns:

The decompressed data.

Throws:

FormatException - If input is not a compressed data block of the appropriate type.

decompress

public byte[] decompress(byte[] data)
                  throws FormatException

Description copied from interface: Codec

Decompresses a block of data.

Specified by:

decompress in interface Codec

Overrides:

decompress in class BaseCodec

Parameters:

data - the data to be decompressed.

Returns:

The decompressed data.

Throws:

FormatException - If data is not valid compressed data for this decompressor.

decompress

public byte[] decompress(byte[][] data)
                  throws FormatException

Description copied from interface: Codec

Decompresses a block of data.

Specified by:

decompress in interface Codec

Overrides:

decompress in class BaseCodec

Parameters:

data - The data to be decompressed.

Returns:

The decompressed data.

Throws:

FormatException - If data is not valid compressed data for this decompressor.

decompress

public byte[] decompress(loci.common.RandomAccessInputStream in,
                         CodecOptions options)
                  throws FormatException,
                         IOException

Description copied from interface: Codec

Decompresses data from the given RandomAccessInputStream.

Specified by:

decompress in interface Codec

Specified by:

decompress in class BaseCodec

Parameters:

in - The stream from which to read compressed data.

options - Options to be used during decompression.

Returns:

The decompressed data.

Throws:

FormatException - If data is not valid compressed data for this decompressor.

IOException

copyOptions

private static void copyOptions(CodecOptions src,
                                ome.codecs.CodecOptions dest)
                         throws FormatException

Throws:

FormatException

getOptions

protected static ome.codecs.CodecOptions getOptions(CodecOptions options)
                                             throws FormatException

Throws:

FormatException

unwrapCodecException

static FormatException unwrapCodecException(ome.codecs.CodecException e)