loci.formats.in

Class PrairieMetadata.Sequence

java.lang.Object

loci.formats.in.PrairieMetadata.Sequence

Enclosing class:

PrairieMetadata

public class PrairieMetadata.Sequence
extends Object

A Prairie <Sequence>.

Field Summary

Fields

Modifier and Type	Field and Description
private Integer	cycle cycle of this <Sequence>.
private PrairieMetadata.Frame	firstFrame The first actual <Frame> element for this <Sequence>.
private HashMap<Integer,PrairieMetadata.Frame>	frames <Frame> elements beneath this <Sequence>, keyed on each frame's index.
private int	indexMax Maximum index value.
private int	indexMin Minimum index value.
private PrairieMetadata.ValueTable	sequenceValues Table of key/value pairs for this <Sequence>.
private boolean	spectralMode SpectralMode of this <Sequence>.
private String	type type attribute of this <Sequence>.

Constructor Summary

Constructors

Constructor and Description
Sequence(Element sequenceElement) Creates a new sequence by parsing the given <Sequence> element.

Method Summary

Modifier and Type	Method and Description
int	getCycle() Gets the cycle associated with this Sequence.
PrairieMetadata.PFile	getFile(int index, int channel) Gets the Frame at the given (cycle, index, channel).
PrairieMetadata.Frame	getFirstFrame() Gets the first Frame of the Sequence.
PrairieMetadata.Frame	getFrame(int index) Gets the Frame with the given index.
int	getIndexCount() Gets the number of recorded indices at this Sequence.
int	getIndexMax() Gets the maximum index value.
int	getIndexMin() Gets the minimum index value.
String	getType() Gets the type associated with this Sequence.
PrairieMetadata.Value	getValue(String key) Gets the value of the given key, beneath this Sequence, inferring the value from the parent <PVScan> section as needed.
PrairieMetadata.ValueTable	getValues() Gets the table of Frame key/value pairs.
boolean	isSpectralMode()
boolean	isTimeSeries() Gets whether this Sequence should be considered a time series.
void	parse(Element sequenceElement) Parses metadata from the given Sequence element.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

frames

private final HashMap<Integer,PrairieMetadata.Frame> frames

<Frame> elements beneath this <Sequence>, keyed on each frame's index.

sequenceValues

private final PrairieMetadata.ValueTable sequenceValues

Table of key/value pairs for this <Sequence>.

firstFrame

private PrairieMetadata.Frame firstFrame

The first actual <Frame> element for this <Sequence>.

indexMin

private int indexMin

Minimum index value.

indexMax

private int indexMax

Maximum index value.

type

private String type

type attribute of this <Sequence>.

cycle

private Integer cycle

cycle of this <Sequence>.

spectralMode

private boolean spectralMode

SpectralMode of this <Sequence>.

Constructor Detail

Sequence

public Sequence(Element sequenceElement)

Creates a new sequence by parsing the given <Sequence> element.

Method Detail

parse

public void parse(Element sequenceElement)

Parses metadata from the given Sequence element.

getType

public String getType()

Gets the type associated with this Sequence.

isTimeSeries

public boolean isTimeSeries()

Gets whether this Sequence should be considered a time series.

getCycle

public int getCycle()

Gets the cycle associated with this Sequence.

isSpectralMode

public boolean isSpectralMode()

getIndexMin

public int getIndexMin()

Gets the minimum index value. Matches the smallest index attribute found, and hence will not necessarily equal 1 (though in practice it usually does).

getIndexMax

public int getIndexMax()

Gets the maximum index value. Matches the largest index attribute found, and hence will not necessarily equal frames#size() (though in practice it usually does).

getIndexCount

public int getIndexCount()

Gets the number of recorded indices at this Sequence. This value is equal to getIndexMax() - getIndexMin() + 1.

getFirstFrame

public PrairieMetadata.Frame getFirstFrame()

Gets the first Frame of the Sequence.

getFrame

public PrairieMetadata.Frame getFrame(int index)

Gets the Frame with the given index.

getFile

public PrairieMetadata.PFile getFile(int index,
                                     int channel)

Gets the Frame at the given (cycle, index, channel).

getValue

public PrairieMetadata.Value getValue(String key)

Gets the value of the given key, beneath this Sequence, inferring the value from the parent <PVScan> section as needed.

getValues

public PrairieMetadata.ValueTable getValues()

Gets the table of Frame key/value pairs.