| Package | Description | 
|---|---|
| loci.formats | Bio-Formats: a library for reading and writing popular microscopy file
formats. | 
| loci.formats.gui | Package containing Bio-Formats graphical user interface code. | 
| loci.plugins.util | Utility classes and methods for the Bio-Formats plugins for ImageJ. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | ChannelFillerFor indexed color data representing true color, factors out
 the indices, replacing them with the color table values directly. | 
| class  | ChannelMergerLogic to automatically merge channels in a file. | 
| class  | ChannelSeparatorLogic to automatically separate the channels in a file. | 
| class  | DimensionSwapperHandles swapping the dimension order of an image series. | 
| class  | FileStitcherLogic to stitch together files with similar names. | 
| class  | MemoizerReaderWrapperimplementation which caches the state of the
 delegate (including and otherReaderWrapperinstances)
 afterMemoizer.setId(String)has been called. | 
| class  | MinMaxCalculatorLogic to compute minimum and maximum values for each channel. | 
| class  | TileStitcher | 
| Modifier and Type | Method and Description | 
|---|---|
| ReaderWrapper | ReaderWrapper. duplicate(Class<? extends IFormatReader> imageReaderClass)Performs a deep copy of the reader, including nested wrapped readers. | 
| private ReaderWrapper | ReaderWrapper. duplicateRecurse(Class<? extends IFormatReader> imageReaderClass) | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | BufferedImageReaderA reader wrapper for reading image planes as BufferedImage objects. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | ImageProcessorReaderA low-level reader for  ImageProcessorobjects. | 
| class  | VirtualReaderTODO | 
Copyright © 2017 Open Microscopy Environment