ImporterOptions (Bio-Formats API)

java.lang.Object
- loci.plugins.prefs.OptionsList
- - loci.plugins.in.ImporterOptions

```
public class ImporterOptions
extends OptionsList
```
Helper class for managing Bio-Formats Importer options. Gets default parameter values from IJ_Prefs.txt.

Field Summary

Fields
Modifier and Type	Field and Description
`private List<Integer>`	`cBegin`
`private List<Integer>`	`cEnd`
`private static String`	`CLASS_IMAGE_5D`
`private static String`	`CLASS_VIEW_5D`
`static String`	`COLOR_MODE_COLORIZED`
`static String`	`COLOR_MODE_COMPOSITE`
`static String`	`COLOR_MODE_CUSTOM`
`static String`	`COLOR_MODE_DEFAULT`
`static String`	`COLOR_MODE_GRAYSCALE`
`private List<loci.common.Region>`	`cropRegion`
`private List<Integer>`	`cStep`
`private List<List<DoubleOption>>`	`customColors`
`private static Color[]`	`DEFAULT_COLORS` Default custom colors for each channel.
`private List<String>`	`inputOrder`
`static String`	`KEY_AUTOSCALE`
`static String`	`KEY_COLOR_MODE`
`static String`	`KEY_CONCATENATE`
`static String`	`KEY_CROP`
`static String`	`KEY_FIRST`
`static String`	`KEY_FORCE_THUMBS`
`static String`	`KEY_GROUP_FILES`
`static String`	`KEY_ID`
`static String`	`KEY_LOCATION`
`static String`	`KEY_MUST_GROUP`
`static String`	`KEY_OPEN_ALL_SERIES`
`static String`	`KEY_QUIET`
`static String`	`KEY_ROIS_MODE`
`static String`	`KEY_SHOW_METADATA`
`static String`	`KEY_SHOW_OME_XML`
`static String`	`KEY_SHOW_ROIS`
`static String`	`KEY_SPECIFY_RANGES`
`static String`	`KEY_SPLIT_C`
`static String`	`KEY_SPLIT_T`
`static String`	`KEY_SPLIT_Z`
`static String`	`KEY_STACK_FORMAT`
`static String`	`KEY_STACK_ORDER`
`static String`	`KEY_STITCH_TILES`
`static String`	`KEY_SWAP_DIMS`
`static String`	`KEY_UNGROUP_FILES`
`static String`	`KEY_UPGRADE_CHECK`
`static String`	`KEY_VIRTUAL`
`static String`	`KEY_WINDOWLESS`
`static String`	`LOCATION_HTTP`
`static String`	`LOCATION_LOCAL`
`static String`	`LOCATION_OMERO`
`static String`	`ORDER_DEFAULT`
`static String`	`ORDER_XYCTZ`
`static String`	`ORDER_XYCZT`
`static String`	`ORDER_XYTCZ`
`static String`	`ORDER_XYTZC`
`static String`	`ORDER_XYZCT`
`static String`	`ORDER_XYZTC`
`static String`	`ROIS_MODE_MANAGER`
`static String`	`ROIS_MODE_OVERLAY`
`private List<Boolean>`	`seriesOn`
`private List<Integer>`	`tBegin`
`private List<Integer>`	`tEnd`
`private List<Integer>`	`tStep`
`static String`	`VIEW_BROWSER`
`static String`	`VIEW_HYPERSTACK`
`static String`	`VIEW_IMAGE_5D`
`static String`	`VIEW_NONE`
`static String`	`VIEW_STANDARD`
`static String`	`VIEW_VIEW_5D`
`private List<Integer>`	`zBegin`
`private List<Integer>`	`zEnd`
`private List<Integer>`	`zStep`

Fields inherited from class loci.plugins.prefs.OptionsList
INI_TYPE, options, TYPE_BOOLEAN, TYPE_STRING

Constructor Summary

Constructors
Constructor and Description

ImporterOptions()

Constructors
Constructor and Description
`ImporterOptions()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected boolean`	`checkKey(String options, String key)` Tests whether the given boolean key is set in the specified options.
`void`	`checkObsoleteOptions()` Handles obsolete macro keys, for backward compatibility.
`void`	`clearSeries()`
`boolean`	`doCrop()`
`boolean`	`doMustGroup()`
`boolean`	`doStitchTiles()`
`boolean`	`doUpgradeCheck()`
`private <T> T`	`get(List<T> list, int index, T defaultValue)`
`String`	`getAutoscaleInfo()`
`int`	`getCBegin(int s)`
`int`	`getCEnd(int s)`
`String`	`getColorMode()`
`String`	`getColorModeInfo()`
`String[]`	`getColorModes()`
`String`	`getConcatenateInfo()`
`String`	`getCropInfo()`
`loci.common.Region`	`getCropRegion(int s)`
`int`	`getCStep(int s)`
`Color`	`getCustomColor(int s, int c)`
`String`	`getCustomColorKey(int s, int c)`
`Color`	`getDefaultCustomColor(int c)`
`String`	`getFirstTimeInfo()`
`String`	`getForceThumbnailsInfo()`
`String`	`getGroupFilesInfo()`
`String`	`getId()`
`String`	`getIdInfo()`
`String`	`getInputOrder(int s)`
`String`	`getLocation()`
`String`	`getLocationInfo()`
`String[]`	`getLocations()`
`String`	`getMustGroupInfo()`
`String`	`getOpenAllSeriesInfo()`
`String`	`getQuietInfo()`
`String`	`getROIsMode()`
`String`	`getROIsModeInfo()`
`String[]`	`getROIsModes()`
`String`	`getShowMetadataInfo()`
`String`	`getShowOMEXMLInfo()`
`String`	`getShowROIsInfo()`
`String`	`getSpecifyRangesInfo()`
`String`	`getSplitChannelsInfo()`
`String`	`getSplitFocalPlanesInfo()`
`String`	`getSplitTimepointsInfo()`
`String`	`getStackFormat()`
`String`	`getStackFormatInfo()`
`String[]`	`getStackFormats()`
`String`	`getStackOrder()`
`String`	`getStackOrderInfo()`
`String[]`	`getStackOrders()`
`String`	`getStitchTilesInfo()`
`String`	`getSwapDimensionsInfo()`
`int`	`getTBegin(int s)`
`int`	`getTEnd(int s)`
`int`	`getTStep(int s)`
`String`	`getUngroupFilesInfo()`
`String`	`getUpgradeCheckInfo()`
`String`	`getVirtualInfo()`
`String`	`getWindowlessInfo()`
`int`	`getZBegin(int s)`
`int`	`getZEnd(int s)`
`int`	`getZStep(int s)`
`boolean`	`isAutoscale()`
`boolean`	`isColorModeColorized()`
`boolean`	`isColorModeComposite()`
`boolean`	`isColorModeCustom()`
`boolean`	`isColorModeDefault()`
`boolean`	`isColorModeGrayscale()`
`boolean`	`isConcatenate()`
`boolean`	`isFirstTime()`
`boolean`	`isForceThumbnails()`
`boolean`	`isGroupFiles()`
`boolean`	`isHTTP()`
`boolean`	`isLocal()`
`boolean`	`isOMERO()`
`boolean`	`isQuiet()`
`boolean`	`isSeriesOn(int s)`
`boolean`	`isShowMetadata()`
`boolean`	`isShowOMEXML()`
`boolean`	`isSpecifyRanges()`
`boolean`	`isSplitChannels()`
`boolean`	`isSplitFocalPlanes()`
`boolean`	`isSplitTimepoints()`
`boolean`	`isSwapDimensions()`
`boolean`	`isUngroupFiles()`
`boolean`	`isViewBrowser()`
`boolean`	`isViewHyperstack()`
`boolean`	`isViewImage5D()`
`boolean`	`isViewNone()`
`boolean`	`isViewStandard()`
`boolean`	`isViewView5D()`
`boolean`	`isVirtual()`
`boolean`	`isWindowless()`
`boolean`	`openAllSeries()`
`void`	`parseArg(String arg)` Parses the plugin argument for parameter values.
`private <T> void`	`set(List<T> list, int index, T value, T fillValue)`
`void`	`setAutoscale(boolean b)`
`void`	`setCBegin(int s, int value)`
`void`	`setCEnd(int s, int value)`
`void`	`setColorMode(String s)`
`void`	`setConcatenate(boolean b)`
`void`	`setCrop(boolean b)`
`void`	`setCropRegion(int s, loci.common.Region r)`
`void`	`setCStep(int s, int value)`
`void`	`setCustomColor(int s, int c, Color color)`
`void`	`setFirstTime(boolean b)`
`void`	`setForceThumbnails(boolean b)`
`void`	`setGroupFiles(boolean b)`
`void`	`setId(String s)`
`void`	`setInputOrder(int s, String value)`
`void`	`setLocation(String s)`
`void`	`setMustGroup(boolean b)`
`void`	`setOpenAllSeries(boolean b)`
`void`	`setQuiet(boolean b)`
`void`	`setROIsMode(String s)`
`void`	`setSeriesOn(int s, boolean value)`
`void`	`setShowMetadata(boolean b)`
`void`	`setShowOMEXML(boolean b)`
`void`	`setShowROIs(boolean b)`
`void`	`setSpecifyRanges(boolean b)`
`void`	`setSplitChannels(boolean b)`
`void`	`setSplitFocalPlanes(boolean b)`
`void`	`setSplitTimepoints(boolean b)`
`void`	`setStackFormat(String s)`
`void`	`setStackOrder(String s)`
`void`	`setStitchTiles(boolean b)`
`void`	`setSwapDimensions(boolean b)`
`void`	`setTBegin(int s, int value)`
`void`	`setTEnd(int s, int value)`
`void`	`setTStep(int s, int value)`
`void`	`setUngroupFiles(boolean b)`
`void`	`setUpgradeCheck(boolean b)`
`void`	`setVirtual(boolean b)`
`void`	`setWindowless(boolean b)`
`void`	`setZBegin(int s, int value)`
`void`	`setZEnd(int s, int value)`
`void`	`setZStep(int s, int value)`
`boolean`	`showROIs()`

Methods inherited from class loci.plugins.prefs.OptionsList
equals, getBooleanOption, getDefaultValue, getInfo, getLabel, getOption, getPossible, getStringOption, getValue, hashCode, isPossible, isSaved, isSet, isSetByDefault, loadOptions, parseOptions, saveOptions, setValue, setValue

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

KEY_AUTOSCALE

public static final String KEY_AUTOSCALE

See Also:: Constant Field Values

KEY_COLOR_MODE

public static final String KEY_COLOR_MODE

See Also:: Constant Field Values

KEY_CONCATENATE

public static final String KEY_CONCATENATE

See Also:: Constant Field Values

KEY_CROP
```
public static final String KEY_CROP
```
See Also:

Constant Field Values

KEY_FIRST
```
public static final String KEY_FIRST
```
See Also:

Constant Field Values

KEY_FORCE_THUMBS

public static final String KEY_FORCE_THUMBS

See Also:: Constant Field Values

KEY_GROUP_FILES

public static final String KEY_GROUP_FILES

See Also:: Constant Field Values

KEY_UNGROUP_FILES

public static final String KEY_UNGROUP_FILES

See Also:: Constant Field Values

KEY_ID
```
public static final String KEY_ID
```
See Also:

Constant Field Values

KEY_LOCATION

public static final String KEY_LOCATION

See Also:: Constant Field Values

KEY_OPEN_ALL_SERIES

public static final String KEY_OPEN_ALL_SERIES

See Also:: Constant Field Values

KEY_QUIET
```
public static final String KEY_QUIET
```
See Also:

Constant Field Values

KEY_SHOW_METADATA

public static final String KEY_SHOW_METADATA

See Also:: Constant Field Values

KEY_SHOW_OME_XML

public static final String KEY_SHOW_OME_XML

See Also:: Constant Field Values

KEY_SHOW_ROIS

public static final String KEY_SHOW_ROIS

See Also:: Constant Field Values

KEY_ROIS_MODE

public static final String KEY_ROIS_MODE

See Also:: Constant Field Values

KEY_SPECIFY_RANGES

public static final String KEY_SPECIFY_RANGES

See Also:: Constant Field Values

KEY_SPLIT_Z
```
public static final String KEY_SPLIT_Z
```
See Also:

Constant Field Values

KEY_SPLIT_T
```
public static final String KEY_SPLIT_T
```
See Also:

Constant Field Values

KEY_SPLIT_C
```
public static final String KEY_SPLIT_C
```
See Also:

Constant Field Values

KEY_STACK_FORMAT

public static final String KEY_STACK_FORMAT

See Also:: Constant Field Values

KEY_STACK_ORDER

public static final String KEY_STACK_ORDER

See Also:: Constant Field Values

KEY_SWAP_DIMS

public static final String KEY_SWAP_DIMS

See Also:: Constant Field Values

KEY_UPGRADE_CHECK

public static final String KEY_UPGRADE_CHECK

See Also:: Constant Field Values

KEY_VIRTUAL
```
public static final String KEY_VIRTUAL
```
See Also:

Constant Field Values

KEY_WINDOWLESS

public static final String KEY_WINDOWLESS

See Also:: Constant Field Values

KEY_STITCH_TILES

public static final String KEY_STITCH_TILES

See Also:: Constant Field Values

KEY_MUST_GROUP

public static final String KEY_MUST_GROUP

See Also:: Constant Field Values

COLOR_MODE_DEFAULT

public static final String COLOR_MODE_DEFAULT

See Also:: Constant Field Values

COLOR_MODE_COMPOSITE

public static final String COLOR_MODE_COMPOSITE

See Also:: Constant Field Values

COLOR_MODE_COLORIZED

public static final String COLOR_MODE_COLORIZED

See Also:: Constant Field Values

COLOR_MODE_GRAYSCALE

public static final String COLOR_MODE_GRAYSCALE

See Also:: Constant Field Values

COLOR_MODE_CUSTOM

public static final String COLOR_MODE_CUSTOM

See Also:: Constant Field Values

LOCATION_LOCAL

public static final String LOCATION_LOCAL

See Also:: Constant Field Values

LOCATION_HTTP

public static final String LOCATION_HTTP

See Also:: Constant Field Values

LOCATION_OMERO

public static final String LOCATION_OMERO

See Also:: Constant Field Values

ROIS_MODE_MANAGER

public static final String ROIS_MODE_MANAGER

See Also:: Constant Field Values

ROIS_MODE_OVERLAY

public static final String ROIS_MODE_OVERLAY

See Also:: Constant Field Values

VIEW_NONE
```
public static final String VIEW_NONE
```
See Also:

Constant Field Values

VIEW_STANDARD

public static final String VIEW_STANDARD

See Also:: Constant Field Values

VIEW_HYPERSTACK

public static final String VIEW_HYPERSTACK

See Also:: Constant Field Values

VIEW_BROWSER

public static final String VIEW_BROWSER

See Also:: Constant Field Values

VIEW_IMAGE_5D

public static final String VIEW_IMAGE_5D

See Also:: Constant Field Values

VIEW_VIEW_5D

public static final String VIEW_VIEW_5D

See Also:: Constant Field Values

CLASS_IMAGE_5D

private static final String CLASS_IMAGE_5D

See Also:: Constant Field Values

CLASS_VIEW_5D

private static final String CLASS_VIEW_5D

See Also:: Constant Field Values

ORDER_DEFAULT

public static final String ORDER_DEFAULT

See Also:: Constant Field Values

ORDER_XYZCT
```
public static final String ORDER_XYZCT
```
See Also:

Constant Field Values

ORDER_XYZTC
```
public static final String ORDER_XYZTC
```
See Also:

Constant Field Values

ORDER_XYCZT
```
public static final String ORDER_XYCZT
```
See Also:

Constant Field Values

ORDER_XYTCZ
```
public static final String ORDER_XYTCZ
```
See Also:

Constant Field Values

ORDER_XYCTZ
```
public static final String ORDER_XYCTZ
```
See Also:

Constant Field Values

ORDER_XYTZC
```
public static final String ORDER_XYTZC
```
See Also:

Constant Field Values

DEFAULT_COLORS
```
private static final Color[] DEFAULT_COLORS
```
Default custom colors for each channel.

seriesOn
```
private List<Boolean> seriesOn
```

inputOrder
```
private List<String> inputOrder
```

cBegin
```
private List<Integer> cBegin
```

cEnd
```
private List<Integer> cEnd
```

cStep
```
private List<Integer> cStep
```

zBegin
```
private List<Integer> zBegin
```

zEnd
```
private List<Integer> zEnd
```

zStep
```
private List<Integer> zStep
```

tBegin
```
private List<Integer> tBegin
```

tEnd
```
private List<Integer> tEnd
```

tStep
```
private List<Integer> tStep
```

cropRegion

private List<loci.common.Region> cropRegion

customColors

private List<List<DoubleOption>> customColors

Constructor Detail

ImporterOptions

public ImporterOptions()
                throws IOException

Throws:: IOException

Method Detail

parseArg
```
public void parseArg(String arg)
```
Parses the plugin argument for parameter values.

checkObsoleteOptions
```
public void checkObsoleteOptions()
```
Handles obsolete macro keys, for backward compatibility.

getAutoscaleInfo
```
public String getAutoscaleInfo()
```

isAutoscale
```
public boolean isAutoscale()
```

setAutoscale
```
public void setAutoscale(boolean b)
```

getColorModeInfo
```
public String getColorModeInfo()
```

getColorMode
```
public String getColorMode()
```

getColorModes
```
public String[] getColorModes()
```

isColorModeDefault
```
public boolean isColorModeDefault()
```

isColorModeComposite
```
public boolean isColorModeComposite()
```

isColorModeColorized
```
public boolean isColorModeColorized()
```

isColorModeGrayscale
```
public boolean isColorModeGrayscale()
```

isColorModeCustom
```
public boolean isColorModeCustom()
```

setColorMode
```
public void setColorMode(String s)
```

getConcatenateInfo
```
public String getConcatenateInfo()
```

isConcatenate
```
public boolean isConcatenate()
```

setConcatenate

public void setConcatenate(boolean b)

getCropInfo
```
public String getCropInfo()
```

doCrop
```
public boolean doCrop()
```

setCrop
```
public void setCrop(boolean b)
```

getFirstTimeInfo
```
public String getFirstTimeInfo()
```

isFirstTime
```
public boolean isFirstTime()
```

setFirstTime
```
public void setFirstTime(boolean b)
```

getForceThumbnailsInfo

public String getForceThumbnailsInfo()

isForceThumbnails
```
public boolean isForceThumbnails()
```

setForceThumbnails

public void setForceThumbnails(boolean b)

getGroupFilesInfo
```
public String getGroupFilesInfo()
```

isGroupFiles
```
public boolean isGroupFiles()
```

setGroupFiles
```
public void setGroupFiles(boolean b)
```

getUngroupFilesInfo
```
public String getUngroupFilesInfo()
```

isUngroupFiles
```
public boolean isUngroupFiles()
```

setUngroupFiles

public void setUngroupFiles(boolean b)

getIdInfo
```
public String getIdInfo()
```

getId
```
public String getId()
```

setId
```
public void setId(String s)
```

getLocationInfo
```
public String getLocationInfo()
```

getLocation
```
public String getLocation()
```

getLocations
```
public String[] getLocations()
```

isLocal
```
public boolean isLocal()
```

isHTTP
```
public boolean isHTTP()
```

isOMERO
```
public boolean isOMERO()
```

setLocation
```
public void setLocation(String s)
```

getOpenAllSeriesInfo
```
public String getOpenAllSeriesInfo()
```

openAllSeries
```
public boolean openAllSeries()
```

setOpenAllSeries

public void setOpenAllSeries(boolean b)

getQuietInfo
```
public String getQuietInfo()
```

isQuiet
```
public boolean isQuiet()
```

setQuiet
```
public void setQuiet(boolean b)
```

getShowMetadataInfo
```
public String getShowMetadataInfo()
```

isShowMetadata
```
public boolean isShowMetadata()
```

setShowMetadata

public void setShowMetadata(boolean b)

getShowOMEXMLInfo
```
public String getShowOMEXMLInfo()
```

isShowOMEXML
```
public boolean isShowOMEXML()
```

setShowOMEXML
```
public void setShowOMEXML(boolean b)
```

getShowROIsInfo
```
public String getShowROIsInfo()
```

showROIs
```
public boolean showROIs()
```

setShowROIs
```
public void setShowROIs(boolean b)
```

getROIsModeInfo
```
public String getROIsModeInfo()
```

getROIsMode
```
public String getROIsMode()
```

getROIsModes
```
public String[] getROIsModes()
```

setROIsMode
```
public void setROIsMode(String s)
```

getSpecifyRangesInfo
```
public String getSpecifyRangesInfo()
```

isSpecifyRanges
```
public boolean isSpecifyRanges()
```

setSpecifyRanges

public void setSpecifyRanges(boolean b)

getSplitFocalPlanesInfo

public String getSplitFocalPlanesInfo()

isSplitFocalPlanes
```
public boolean isSplitFocalPlanes()
```

setSplitFocalPlanes

public void setSplitFocalPlanes(boolean b)

getSplitTimepointsInfo

public String getSplitTimepointsInfo()

isSplitTimepoints
```
public boolean isSplitTimepoints()
```

setSplitTimepoints

public void setSplitTimepoints(boolean b)

getSplitChannelsInfo
```
public String getSplitChannelsInfo()
```

isSplitChannels
```
public boolean isSplitChannels()
```

setSplitChannels

public void setSplitChannels(boolean b)

getStackFormatInfo
```
public String getStackFormatInfo()
```

getStackFormat
```
public String getStackFormat()
```

getStackFormats
```
public String[] getStackFormats()
```

isViewNone
```
public boolean isViewNone()
```

isViewStandard
```
public boolean isViewStandard()
```

isViewHyperstack
```
public boolean isViewHyperstack()
```

isViewBrowser
```
public boolean isViewBrowser()
```

isViewImage5D
```
public boolean isViewImage5D()
```

isViewView5D
```
public boolean isViewView5D()
```

setStackFormat
```
public void setStackFormat(String s)
```

getStackOrderInfo
```
public String getStackOrderInfo()
```

getStackOrder
```
public String getStackOrder()
```

getStackOrders
```
public String[] getStackOrders()
```

setStackOrder
```
public void setStackOrder(String s)
```

getSwapDimensionsInfo
```
public String getSwapDimensionsInfo()
```

isSwapDimensions
```
public boolean isSwapDimensions()
```

setSwapDimensions

public void setSwapDimensions(boolean b)

getUpgradeCheckInfo
```
public String getUpgradeCheckInfo()
```

doUpgradeCheck
```
public boolean doUpgradeCheck()
```

setUpgradeCheck

public void setUpgradeCheck(boolean b)

getVirtualInfo
```
public String getVirtualInfo()
```

isVirtual
```
public boolean isVirtual()
```

setVirtual
```
public void setVirtual(boolean b)
```

getWindowlessInfo
```
public String getWindowlessInfo()
```

isWindowless
```
public boolean isWindowless()
```

setWindowless
```
public void setWindowless(boolean b)
```

getStitchTilesInfo
```
public String getStitchTilesInfo()
```

doStitchTiles
```
public boolean doStitchTiles()
```

setStitchTiles

public void setStitchTiles(boolean b)

getMustGroupInfo
```
public String getMustGroupInfo()
```

doMustGroup
```
public boolean doMustGroup()
```

setMustGroup
```
public void setMustGroup(boolean b)
```

isSeriesOn
```
public boolean isSeriesOn(int s)
```

setSeriesOn

public void setSeriesOn(int s,
                        boolean value)

clearSeries
```
public void clearSeries()
```

getInputOrder
```
public String getInputOrder(int s)
```

setInputOrder

public void setInputOrder(int s,
                          String value)

getCBegin
```
public int getCBegin(int s)
```

setCBegin

public void setCBegin(int s,
                      int value)

getCEnd
```
public int getCEnd(int s)
```

setCEnd

public void setCEnd(int s,
                    int value)

getCStep
```
public int getCStep(int s)
```

setCStep

public void setCStep(int s,
                     int value)

getZBegin
```
public int getZBegin(int s)
```

setZBegin

public void setZBegin(int s,
                      int value)

getZEnd
```
public int getZEnd(int s)
```

setZEnd

public void setZEnd(int s,
                    int value)

getZStep
```
public int getZStep(int s)
```

setZStep

public void setZStep(int s,
                     int value)

getTBegin
```
public int getTBegin(int s)
```

setTBegin

public void setTBegin(int s,
                      int value)

getTEnd
```
public int getTEnd(int s)
```

setTEnd

public void setTEnd(int s,
                    int value)

getTStep
```
public int getTStep(int s)
```

setTStep

public void setTStep(int s,
                     int value)

getCropRegion

public loci.common.Region getCropRegion(int s)

setCropRegion

public void setCropRegion(int s,
                          loci.common.Region r)

getCustomColor

public Color getCustomColor(int s,
                            int c)

setCustomColor

public void setCustomColor(int s,
                           int c,
                           Color color)

getDefaultCustomColor

public Color getDefaultCustomColor(int c)

getCustomColorKey

public String getCustomColorKey(int s,
                                int c)

set

private <T> void set(List<T> list,
                     int index,
                     T value,
                     T fillValue)

get

private <T> T get(List<T> list,
                  int index,
                  T defaultValue)

checkKey

protected boolean checkKey(String options,
                           String key)

Tests whether the given boolean key is set in the specified options.

Class ImporterOptions

Field Summary

Fields inherited from class loci.plugins.prefs.OptionsList

Constructor Summary

Method Summary

Methods inherited from class loci.plugins.prefs.OptionsList

Methods inherited from class java.lang.Object

Field Detail

KEY_AUTOSCALE

KEY_COLOR_MODE

KEY_CONCATENATE

KEY_CROP

KEY_FIRST

KEY_FORCE_THUMBS

KEY_GROUP_FILES

KEY_UNGROUP_FILES

KEY_ID

KEY_LOCATION

KEY_OPEN_ALL_SERIES

KEY_QUIET

KEY_SHOW_METADATA

KEY_SHOW_OME_XML

KEY_SHOW_ROIS

KEY_ROIS_MODE

KEY_SPECIFY_RANGES

KEY_SPLIT_Z

KEY_SPLIT_T

KEY_SPLIT_C

KEY_STACK_FORMAT

KEY_STACK_ORDER

KEY_SWAP_DIMS

KEY_UPGRADE_CHECK

KEY_VIRTUAL

KEY_WINDOWLESS

KEY_STITCH_TILES

KEY_MUST_GROUP

COLOR_MODE_DEFAULT

COLOR_MODE_COMPOSITE

COLOR_MODE_COLORIZED

COLOR_MODE_GRAYSCALE

COLOR_MODE_CUSTOM

LOCATION_LOCAL

LOCATION_HTTP

LOCATION_OMERO

ROIS_MODE_MANAGER

ROIS_MODE_OVERLAY

VIEW_NONE

VIEW_STANDARD

VIEW_HYPERSTACK

VIEW_BROWSER

VIEW_IMAGE_5D

VIEW_VIEW_5D

CLASS_IMAGE_5D

CLASS_VIEW_5D

ORDER_DEFAULT

ORDER_XYZCT

ORDER_XYZTC

ORDER_XYCZT

ORDER_XYTCZ

ORDER_XYCTZ

ORDER_XYTZC

DEFAULT_COLORS

seriesOn

inputOrder

cBegin

cEnd

cStep

zBegin

zEnd

zStep

tBegin

tEnd

tStep

cropRegion

customColors

Constructor Detail

ImporterOptions

Method Detail

parseArg

checkObsoleteOptions