loci.formats.in

Class IM3Reader.Spectrum

java.lang.Object

loci.formats.in.IM3Reader.Spectrum

Enclosing class:

IM3Reader

public static class IM3Reader.Spectrum
extends Object

Author:

Lee Kamentsky Represents a Spectrum record within a SpectralLibrary

Field Summary

Fields

Modifier and Type	Field and Description
private float[]	magnitudes
private String	name
private float[]	wavelengths

Constructor Summary

Constructors

Constructor and Description
Spectrum(loci.common.IRandomAccess is, IM3Reader.ContainerRecord rec) Construct a spectrum by parsing a Spectrum record

Method Summary

Modifier and Type	Method and Description
float[]	getMagnitudes()
String	getName()
float[]	getWavelengths()
private void	parseSpectrumRecord(loci.common.IRandomAccess is, IM3Reader.ContainerRecord rec) Parse the spectrum record

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

name

private String name

wavelengths

private float[] wavelengths

magnitudes

private float[] magnitudes

Constructor Detail

Spectrum

Spectrum(loci.common.IRandomAccess is,
         IM3Reader.ContainerRecord rec)
  throws IOException

Construct a spectrum by parsing a Spectrum record

Parameters:

is - file handle to the file being parsed

rec - the container record grouping the spectrum's record

Throws:

IOException

Method Detail

getName

public String getName()

Returns:

the name of this spectrum or null if unnamed

getWavelengths

public float[] getWavelengths()

Returns:

the wavelengths for each of the spectral bins

getMagnitudes

public float[] getMagnitudes()

Returns:

the magnitudes of the signals for each of the spectral bins

parseSpectrumRecord

private void parseSpectrumRecord(loci.common.IRandomAccess is,
                                 IM3Reader.ContainerRecord rec)
                          throws IOException

Parse the spectrum record

Parameters:

is - the file handle

rec - the spectrum container record

Throws:

IOException