| Package | Description | 
|---|---|
| loci.formats | 
 Bio-Formats: a library for reading and writing popular microscopy file
formats. 
 | 
| loci.formats.ome | 
 Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download. 
 | 
| loci.formats.tools | 
 Package containing utility methods corresponding
to the Bio-Formats command line tools. 
 | 
| loci.plugins.in | 
 Bio-Formats Importer plugin for ImageJ. 
 | 
| loci.plugins.util | 
 Utility classes and methods for the Bio-Formats plugins for ImageJ. 
 | 
| loci.tests.testng | 
 Package for automated testing of the Bio-Formats software packages using TestNG. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
static IMetadata | 
MetadataTools.createOMEXMLMetadata()
Creates an OME-XML metadata object using reflection, to avoid
 direct dependencies on the optional  
loci.formats.ome package. | 
| Modifier and Type | Interface and Description | 
|---|---|
interface  | 
OMEXMLMetadata  | 
| Modifier and Type | Method and Description | 
|---|---|
private IMetadata | 
MakeTestOmeTiff.createMetadata(String name,
              CoreMetadata info)  | 
| Modifier and Type | Field and Description | 
|---|---|
protected IMetadata | 
ImportProcess.meta  | 
| Modifier and Type | Method and Description | 
|---|---|
IMetadata | 
ImportProcess.getOMEMetadata()
Valid only after  
ImportStep.READER. | 
| Modifier and Type | Method and Description | 
|---|---|
private double | 
Calibrator.computeVariableTimeInterval(IMetadata meta,
                           int series)  | 
private String | 
ImagePlusReader.constructSliceLabel(int ndx,
                   IFormatReader r,
                   IMetadata meta,
                   int series,
                   int zCount,
                   int cCount,
                   int tCount)  | 
| Modifier and Type | Method and Description | 
|---|---|
static void | 
ROIHandler.openROIs(IMetadata retrieve,
        ImagePlus[] images)
Look for ROIs in the given OMEXMLMetadata; if any are present, apply
 them to the given images and display them in the ROI manager. 
 | 
static void | 
ROIHandler.openROIs(IMetadata retrieve,
        ImagePlus[] images,
        boolean isOMERO)
Opens the rois and converts them into ImageJ Rois. 
 | 
| Modifier and Type | Field and Description | 
|---|---|
private IMetadata | 
TiffWriterTest.metadata
The metadata store. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
private IMetadata | 
ConversionTest.createMetadata(String pixelType,
              int rgbChannels,
              int seriesCount,
              boolean littleEndian)  | 
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