OMEXMLMetadataImpl (Bio-Formats API)

java.lang.Object
- ome.xml.meta.AbstractOMEXMLMetadata
- - ome.xml.meta.OMEXMLMetadataImpl

All Implemented Interfaces:

BaseMetadata, IMetadata, MetadataRetrieve, MetadataStore, OMEXMLMetadata

Direct Known Subclasses:

OMEXMLMetadataImpl
```
public class OMEXMLMetadataImpl
extends AbstractOMEXMLMetadata
```
A metadata store implementation for constructing and manipulating OME-XML DOMs for the current version of OME-XML.

Author:

Curtis Rueden ctrueden at wisc.edu, Melissa Linkert linkert at wisc.edu

Field Summary

Fields
Modifier and Type Field and Description

private OMEModel model

private OMEXMLMetadataRoot root
- Fields inherited from class ome.xml.meta.AbstractOMEXMLMetadata
  LOGGER, SCHEMA, XSI_NS

Fields
Modifier and Type	Field and Description
`private OMEModel`	`model`
`private OMEXMLMetadataRoot`	`root`

Constructor Summary

Constructors
Constructor and Description

OMEXMLMetadataImpl()

Constructors
Constructor and Description
`OMEXMLMetadataImpl()`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`createRoot()` Create root node.
`String`	`dumpXML()` Dumps the given OME-XML DOM tree to a string.
`String`	`getArcAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Get the AnnotationRef property of Arc.
`String`	`getArcID(int instrumentIndex, int lightSourceIndex)` Get the ID property of Arc.
`String`	`getArcLotNumber(int instrumentIndex, int lightSourceIndex)` Get the LotNumber property of Arc.
`String`	`getArcManufacturer(int instrumentIndex, int lightSourceIndex)` Get the Manufacturer property of Arc.
`String`	`getArcModel(int instrumentIndex, int lightSourceIndex)` Get the Model property of Arc.
`Power`	`getArcPower(int instrumentIndex, int lightSourceIndex)` Get the Power property of Arc.
`String`	`getArcSerialNumber(int instrumentIndex, int lightSourceIndex)` Get the SerialNumber property of Arc.
`ArcType`	`getArcType(int instrumentIndex, int lightSourceIndex)` Get the Type property of Arc.
`String`	`getBinaryFileFileName(int fileAnnotationIndex)` Get the FileName property of BinaryFile.
`String`	`getBinaryFileMIMEType(int fileAnnotationIndex)` Get the MIMEType property of BinaryFile.
`NonNegativeLong`	`getBinaryFileSize(int fileAnnotationIndex)` Get the Size property of BinaryFile.
`String`	`getBinaryOnlyMetadataFile()` Get the MetadataFile property of BinaryOnly.
`String`	`getBinaryOnlyUUID()` Get the UUID property of BinaryOnly.
`int`	`getBooleanAnnotationAnnotationCount(int booleanAnnotationIndex)` Get the number of links to a BooleanAnnotation.
`String`	`getBooleanAnnotationAnnotationRef(int booleanAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of BooleanAnnotation.
`String`	`getBooleanAnnotationAnnotator(int booleanAnnotationIndex)` Get the Annotator property of BooleanAnnotation.
`int`	`getBooleanAnnotationCount()` Get the number of BooleanAnnotation elements.
`String`	`getBooleanAnnotationDescription(int booleanAnnotationIndex)` Get the Description property of BooleanAnnotation.
`String`	`getBooleanAnnotationID(int booleanAnnotationIndex)` Get the ID property of BooleanAnnotation.
`String`	`getBooleanAnnotationNamespace(int booleanAnnotationIndex)` Get the Namespace property of BooleanAnnotation.
`Boolean`	`getBooleanAnnotationValue(int booleanAnnotationIndex)` Get the Value property of BooleanAnnotation.
`AcquisitionMode`	`getChannelAcquisitionMode(int imageIndex, int channelIndex)` Get the AcquisitionMode property of Channel.
`String`	`getChannelAnnotationRef(int imageIndex, int channelIndex, int annotationRefIndex)` Get the AnnotationRef property of Channel.
`int`	`getChannelAnnotationRefCount(int imageIndex, int channelIndex)` Get the number of AnnotationRef elements in Channel.
`Color`	`getChannelColor(int imageIndex, int channelIndex)` Get the Color property of Channel.
`ContrastMethod`	`getChannelContrastMethod(int imageIndex, int channelIndex)` Get the ContrastMethod property of Channel.
`int`	`getChannelCount(int imageIndex)` Get the number of Channel elements.
`Length`	`getChannelEmissionWavelength(int imageIndex, int channelIndex)` Get the EmissionWavelength property of Channel.
`Length`	`getChannelExcitationWavelength(int imageIndex, int channelIndex)` Get the ExcitationWavelength property of Channel.
`String`	`getChannelFilterSetRef(int imageIndex, int channelIndex)` Get the FilterSetRef property of Channel.
`String`	`getChannelFluor(int imageIndex, int channelIndex)` Get the Fluor property of Channel.
`String`	`getChannelID(int imageIndex, int channelIndex)` Get the ID property of Channel.
`IlluminationType`	`getChannelIlluminationType(int imageIndex, int channelIndex)` Get the IlluminationType property of Channel.
`PercentFraction`	`getChannelLightSourceSettingsAttenuation(int imageIndex, int channelIndex)` Get the Attenuation property of LightSourceSettings.
`String`	`getChannelLightSourceSettingsID(int imageIndex, int channelIndex)` Get the ID property of LightSourceSettings.
`Length`	`getChannelLightSourceSettingsWavelength(int imageIndex, int channelIndex)` Get the Wavelength property of LightSourceSettings.
`String`	`getChannelName(int imageIndex, int channelIndex)` Get the Name property of Channel.
`Double`	`getChannelNDFilter(int imageIndex, int channelIndex)` Get the NDFilter property of Channel.
`Length`	`getChannelPinholeSize(int imageIndex, int channelIndex)` Get the PinholeSize property of Channel.
`Integer`	`getChannelPockelCellSetting(int imageIndex, int channelIndex)` Get the PockelCellSetting property of Channel.
`PositiveInteger`	`getChannelSamplesPerPixel(int imageIndex, int channelIndex)` Get the SamplesPerPixel property of Channel.
`int`	`getCommentAnnotationAnnotationCount(int commentAnnotationIndex)` Get the number of links to a CommentAnnotation.
`String`	`getCommentAnnotationAnnotationRef(int commentAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of CommentAnnotation.
`String`	`getCommentAnnotationAnnotator(int commentAnnotationIndex)` Get the Annotator property of CommentAnnotation.
`int`	`getCommentAnnotationCount()` Get the number of CommentAnnotation elements.
`String`	`getCommentAnnotationDescription(int commentAnnotationIndex)` Get the Description property of CommentAnnotation.
`String`	`getCommentAnnotationID(int commentAnnotationIndex)` Get the ID property of CommentAnnotation.
`String`	`getCommentAnnotationNamespace(int commentAnnotationIndex)` Get the Namespace property of CommentAnnotation.
`String`	`getCommentAnnotationValue(int commentAnnotationIndex)` Get the Value property of CommentAnnotation.
`String`	`getDatasetAnnotationRef(int datasetIndex, int annotationRefIndex)` Get the AnnotationRef property of Dataset.
`int`	`getDatasetAnnotationRefCount(int datasetIndex)` Get the number of AnnotationRef elements in Dataset.
`int`	`getDatasetCount()` Get the number of Dataset elements.
`String`	`getDatasetDescription(int datasetIndex)` Get the Description property of Dataset.
`String`	`getDatasetExperimenterGroupRef(int datasetIndex)` Get the ExperimenterGroupRef property of Dataset.
`String`	`getDatasetExperimenterRef(int datasetIndex)` Get the ExperimenterRef property of Dataset.
`String`	`getDatasetID(int datasetIndex)` Get the ID property of Dataset.
`String`	`getDatasetImageRef(int datasetIndex, int imageRefIndex)` Get the ImageRef property of Dataset.
`int`	`getDatasetImageRefCount(int datasetIndex)` Get the number of ImageRef elements in Dataset.
`String`	`getDatasetName(int datasetIndex)` Get the Name property of Dataset.
`int`	`getDatasetRefCount(int projectIndex)` Get the number of DatasetRef elements.
`Double`	`getDetectorAmplificationGain(int instrumentIndex, int detectorIndex)` Get the AmplificationGain property of Detector.
`String`	`getDetectorAnnotationRef(int instrumentIndex, int detectorIndex, int annotationRefIndex)` Get the AnnotationRef property of Detector.
`int`	`getDetectorAnnotationRefCount(int instrumentIndex, int detectorIndex)` Get the number of AnnotationRef elements in Detector.
`int`	`getDetectorCount(int instrumentIndex)` Get the number of Detector elements.
`Double`	`getDetectorGain(int instrumentIndex, int detectorIndex)` Get the Gain property of Detector.
`String`	`getDetectorID(int instrumentIndex, int detectorIndex)` Get the ID property of Detector.
`String`	`getDetectorLotNumber(int instrumentIndex, int detectorIndex)` Get the LotNumber property of Detector.
`String`	`getDetectorManufacturer(int instrumentIndex, int detectorIndex)` Get the Manufacturer property of Detector.
`String`	`getDetectorModel(int instrumentIndex, int detectorIndex)` Get the Model property of Detector.
`Double`	`getDetectorOffset(int instrumentIndex, int detectorIndex)` Get the Offset property of Detector.
`String`	`getDetectorSerialNumber(int instrumentIndex, int detectorIndex)` Get the SerialNumber property of Detector.
`Binning`	`getDetectorSettingsBinning(int imageIndex, int channelIndex)` Get the Binning property of DetectorSettings.
`Double`	`getDetectorSettingsGain(int imageIndex, int channelIndex)` Get the Gain property of DetectorSettings.
`String`	`getDetectorSettingsID(int imageIndex, int channelIndex)` Get the ID property of DetectorSettings.
`PositiveInteger`	`getDetectorSettingsIntegration(int imageIndex, int channelIndex)` Get the Integration property of DetectorSettings.
`Double`	`getDetectorSettingsOffset(int imageIndex, int channelIndex)` Get the Offset property of DetectorSettings.
`Frequency`	`getDetectorSettingsReadOutRate(int imageIndex, int channelIndex)` Get the ReadOutRate property of DetectorSettings.
`ElectricPotential`	`getDetectorSettingsVoltage(int imageIndex, int channelIndex)` Get the Voltage property of DetectorSettings.
`Double`	`getDetectorSettingsZoom(int imageIndex, int channelIndex)` Get the Zoom property of DetectorSettings.
`DetectorType`	`getDetectorType(int instrumentIndex, int detectorIndex)` Get the Type property of Detector.
`ElectricPotential`	`getDetectorVoltage(int instrumentIndex, int detectorIndex)` Get the Voltage property of Detector.
`Double`	`getDetectorZoom(int instrumentIndex, int detectorIndex)` Get the Zoom property of Detector.
`String`	`getDichroicAnnotationRef(int instrumentIndex, int dichroicIndex, int annotationRefIndex)` Get the AnnotationRef property of Dichroic.
`int`	`getDichroicAnnotationRefCount(int instrumentIndex, int dichroicIndex)` Get the number of AnnotationRef elements in Dichroic.
`int`	`getDichroicCount(int instrumentIndex)` Get the number of Dichroic elements.
`String`	`getDichroicID(int instrumentIndex, int dichroicIndex)` Get the ID property of Dichroic.
`String`	`getDichroicLotNumber(int instrumentIndex, int dichroicIndex)` Get the LotNumber property of Dichroic.
`String`	`getDichroicManufacturer(int instrumentIndex, int dichroicIndex)` Get the Manufacturer property of Dichroic.
`String`	`getDichroicModel(int instrumentIndex, int dichroicIndex)` Get the Model property of Dichroic.
`String`	`getDichroicSerialNumber(int instrumentIndex, int dichroicIndex)` Get the SerialNumber property of Dichroic.
`int`	`getDoubleAnnotationAnnotationCount(int doubleAnnotationIndex)` Get the number of links to a DoubleAnnotation.
`String`	`getDoubleAnnotationAnnotationRef(int doubleAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of DoubleAnnotation.
`String`	`getDoubleAnnotationAnnotator(int doubleAnnotationIndex)` Get the Annotator property of DoubleAnnotation.
`int`	`getDoubleAnnotationCount()` Get the number of DoubleAnnotation elements.
`String`	`getDoubleAnnotationDescription(int doubleAnnotationIndex)` Get the Description property of DoubleAnnotation.
`String`	`getDoubleAnnotationID(int doubleAnnotationIndex)` Get the ID property of DoubleAnnotation.
`String`	`getDoubleAnnotationNamespace(int doubleAnnotationIndex)` Get the Namespace property of DoubleAnnotation.
`Double`	`getDoubleAnnotationValue(int doubleAnnotationIndex)` Get the Value property of DoubleAnnotation.
`String`	`getEllipseAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Ellipse.
`Color`	`getEllipseFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Ellipse.
`FillRule`	`getEllipseFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Ellipse.
`FontFamily`	`getEllipseFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Ellipse.
`Length`	`getEllipseFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Ellipse.
`FontStyle`	`getEllipseFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Ellipse.
`String`	`getEllipseID(int ROIIndex, int shapeIndex)` Get the ID property of Ellipse.
`LineCap`	`getEllipseLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Ellipse.
`Boolean`	`getEllipseLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Ellipse.
`Double`	`getEllipseRadiusX(int ROIIndex, int shapeIndex)` Get the RadiusX property of Ellipse.
`Double`	`getEllipseRadiusY(int ROIIndex, int shapeIndex)` Get the RadiusY property of Ellipse.
`Color`	`getEllipseStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Ellipse.
`String`	`getEllipseStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Ellipse.
`Length`	`getEllipseStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Ellipse.
`String`	`getEllipseText(int ROIIndex, int shapeIndex)` Get the Text property of Ellipse.
`NonNegativeInteger`	`getEllipseTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Ellipse.
`NonNegativeInteger`	`getEllipseTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Ellipse.
`NonNegativeInteger`	`getEllipseTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Ellipse.
`AffineTransform`	`getEllipseTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Ellipse.
`Boolean`	`getEllipseVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Ellipse.
`Double`	`getEllipseX(int ROIIndex, int shapeIndex)` Get the X property of Ellipse.
`Double`	`getEllipseY(int ROIIndex, int shapeIndex)` Get the Y property of Ellipse.
`int`	`getExperimentCount()` Get the number of Experiment elements.
`String`	`getExperimentDescription(int experimentIndex)` Get the Description property of Experiment.
`String`	`getExperimenterAnnotationRef(int experimenterIndex, int annotationRefIndex)` Get the AnnotationRef property of Experimenter.
`int`	`getExperimenterAnnotationRefCount(int experimenterIndex)` Get the number of AnnotationRef elements in Experimenter.
`int`	`getExperimenterCount()` Get the number of Experimenter elements.
`String`	`getExperimenterEmail(int experimenterIndex)` Get the Email property of Experimenter.
`String`	`getExperimenterFirstName(int experimenterIndex)` Get the FirstName property of Experimenter.
`String`	`getExperimenterGroupAnnotationRef(int experimenterGroupIndex, int annotationRefIndex)` Get the AnnotationRef property of ExperimenterGroup.
`int`	`getExperimenterGroupAnnotationRefCount(int experimenterGroupIndex)` Get the number of AnnotationRef elements in ExperimenterGroup.
`int`	`getExperimenterGroupCount()` Get the number of ExperimenterGroup elements.
`String`	`getExperimenterGroupDescription(int experimenterGroupIndex)` Get the Description property of ExperimenterGroup.
`String`	`getExperimenterGroupExperimenterRef(int experimenterGroupIndex, int experimenterRefIndex)` Get the ExperimenterRef property of ExperimenterGroup.
`int`	`getExperimenterGroupExperimenterRefCount(int experimenterGroupIndex)` Get the number of ExperimenterRef elements in ExperimenterGroup.
`String`	`getExperimenterGroupID(int experimenterGroupIndex)` Get the ID property of ExperimenterGroup.
`String`	`getExperimenterGroupLeader(int experimenterGroupIndex, int leaderIndex)` Get the Leader property of ExperimenterGroup.
`String`	`getExperimenterGroupName(int experimenterGroupIndex)` Get the Name property of ExperimenterGroup.
`String`	`getExperimenterID(int experimenterIndex)` Get the ID property of Experimenter.
`String`	`getExperimenterInstitution(int experimenterIndex)` Get the Institution property of Experimenter.
`String`	`getExperimenterLastName(int experimenterIndex)` Get the LastName property of Experimenter.
`String`	`getExperimenterMiddleName(int experimenterIndex)` Get the MiddleName property of Experimenter.
`String`	`getExperimenterUserName(int experimenterIndex)` Get the UserName property of Experimenter.
`String`	`getExperimentExperimenterRef(int experimentIndex)` Get the ExperimenterRef property of Experiment.
`String`	`getExperimentID(int experimentIndex)` Get the ID property of Experiment.
`ExperimentType`	`getExperimentType(int experimentIndex)` Get the Type property of Experiment.
`String`	`getFilamentAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Get the AnnotationRef property of Filament.
`String`	`getFilamentID(int instrumentIndex, int lightSourceIndex)` Get the ID property of Filament.
`String`	`getFilamentLotNumber(int instrumentIndex, int lightSourceIndex)` Get the LotNumber property of Filament.
`String`	`getFilamentManufacturer(int instrumentIndex, int lightSourceIndex)` Get the Manufacturer property of Filament.
`String`	`getFilamentModel(int instrumentIndex, int lightSourceIndex)` Get the Model property of Filament.
`Power`	`getFilamentPower(int instrumentIndex, int lightSourceIndex)` Get the Power property of Filament.
`String`	`getFilamentSerialNumber(int instrumentIndex, int lightSourceIndex)` Get the SerialNumber property of Filament.
`FilamentType`	`getFilamentType(int instrumentIndex, int lightSourceIndex)` Get the Type property of Filament.
`int`	`getFileAnnotationAnnotationCount(int fileAnnotationIndex)` Get the number of links to a FileAnnotation.
`String`	`getFileAnnotationAnnotationRef(int fileAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of FileAnnotation.
`String`	`getFileAnnotationAnnotator(int fileAnnotationIndex)` Get the Annotator property of FileAnnotation.
`int`	`getFileAnnotationCount()` Get the number of FileAnnotation elements.
`String`	`getFileAnnotationDescription(int fileAnnotationIndex)` Get the Description property of FileAnnotation.
`String`	`getFileAnnotationID(int fileAnnotationIndex)` Get the ID property of FileAnnotation.
`String`	`getFileAnnotationNamespace(int fileAnnotationIndex)` Get the Namespace property of FileAnnotation.
`String`	`getFilterAnnotationRef(int instrumentIndex, int filterIndex, int annotationRefIndex)` Get the AnnotationRef property of Filter.
`int`	`getFilterAnnotationRefCount(int instrumentIndex, int filterIndex)` Get the number of AnnotationRef elements in Filter.
`int`	`getFilterCount(int instrumentIndex)` Get the number of Filter elements.
`String`	`getFilterFilterWheel(int instrumentIndex, int filterIndex)` Get the FilterWheel property of Filter.
`String`	`getFilterID(int instrumentIndex, int filterIndex)` Get the ID property of Filter.
`String`	`getFilterLotNumber(int instrumentIndex, int filterIndex)` Get the LotNumber property of Filter.
`String`	`getFilterManufacturer(int instrumentIndex, int filterIndex)` Get the Manufacturer property of Filter.
`String`	`getFilterModel(int instrumentIndex, int filterIndex)` Get the Model property of Filter.
`String`	`getFilterSerialNumber(int instrumentIndex, int filterIndex)` Get the SerialNumber property of Filter.
`int`	`getFilterSetCount(int instrumentIndex)` Get the number of FilterSet elements.
`String`	`getFilterSetDichroicRef(int instrumentIndex, int filterSetIndex)` Get the DichroicRef property of FilterSet.
`String`	`getFilterSetEmissionFilterRef(int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)` Get the EmissionFilterRef property of FilterSet.
`int`	`getFilterSetEmissionFilterRefCount(int instrumentIndex, int filterSetIndex)` Get the number of EmissionFilterRef elements in FilterSet.
`String`	`getFilterSetExcitationFilterRef(int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)` Get the ExcitationFilterRef property of FilterSet.
`int`	`getFilterSetExcitationFilterRefCount(int instrumentIndex, int filterSetIndex)` Get the number of ExcitationFilterRef elements in FilterSet.
`String`	`getFilterSetID(int instrumentIndex, int filterSetIndex)` Get the ID property of FilterSet.
`String`	`getFilterSetLotNumber(int instrumentIndex, int filterSetIndex)` Get the LotNumber property of FilterSet.
`String`	`getFilterSetManufacturer(int instrumentIndex, int filterSetIndex)` Get the Manufacturer property of FilterSet.
`String`	`getFilterSetModel(int instrumentIndex, int filterSetIndex)` Get the Model property of FilterSet.
`String`	`getFilterSetSerialNumber(int instrumentIndex, int filterSetIndex)` Get the SerialNumber property of FilterSet.
`FilterType`	`getFilterType(int instrumentIndex, int filterIndex)` Get the Type property of Filter.
`String`	`getGenericExcitationSourceAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Get the AnnotationRef property of GenericExcitationSource.
`String`	`getGenericExcitationSourceID(int instrumentIndex, int lightSourceIndex)` Get the ID property of GenericExcitationSource.
`String`	`getGenericExcitationSourceLotNumber(int instrumentIndex, int lightSourceIndex)` Get the LotNumber property of GenericExcitationSource.
`String`	`getGenericExcitationSourceManufacturer(int instrumentIndex, int lightSourceIndex)` Get the Manufacturer property of GenericExcitationSource.
`List<MapPair>`	`getGenericExcitationSourceMap(int instrumentIndex, int lightSourceIndex)` Gets the Map value associated with this generic light source
`String`	`getGenericExcitationSourceModel(int instrumentIndex, int lightSourceIndex)` Get the Model property of GenericExcitationSource.
`Power`	`getGenericExcitationSourcePower(int instrumentIndex, int lightSourceIndex)` Get the Power property of GenericExcitationSource.
`String`	`getGenericExcitationSourceSerialNumber(int instrumentIndex, int lightSourceIndex)` Get the SerialNumber property of GenericExcitationSource.
`Timestamp`	`getImageAcquisitionDate(int imageIndex)` Get the AcquisitionDate property of Image.
`String`	`getImageAnnotationRef(int imageIndex, int annotationRefIndex)` Get the AnnotationRef property of Image.
`int`	`getImageAnnotationRefCount(int imageIndex)` Get the number of AnnotationRef elements in Image.
`int`	`getImageCount()` Get the number of Image elements.
`String`	`getImageDescription(int imageIndex)` Get the Description property of Image.
`String`	`getImageExperimenterGroupRef(int imageIndex)` Get the ExperimenterGroupRef property of Image.
`String`	`getImageExperimenterRef(int imageIndex)` Get the ExperimenterRef property of Image.
`String`	`getImageExperimentRef(int imageIndex)` Get the ExperimentRef property of Image.
`String`	`getImageID(int imageIndex)` Get the ID property of Image.
`String`	`getImageInstrumentRef(int imageIndex)` Get the InstrumentRef property of Image.
`String`	`getImageMicrobeamManipulationRef(int imageIndex, int microbeamManipulationRefIndex)` Get the MicrobeamManipulationRef property of Image.
`String`	`getImageName(int imageIndex)` Get the Name property of Image.
`String`	`getImageROIRef(int imageIndex, int ROIRefIndex)` Get the ROIRef property of Image.
`int`	`getImageROIRefCount(int imageIndex)` Get the number of ROIRef elements in Image.
`Pressure`	`getImagingEnvironmentAirPressure(int imageIndex)` Get the AirPressure property of ImagingEnvironment.
`PercentFraction`	`getImagingEnvironmentCO2Percent(int imageIndex)` Get the CO2Percent property of ImagingEnvironment.
`PercentFraction`	`getImagingEnvironmentHumidity(int imageIndex)` Get the Humidity property of ImagingEnvironment.
`List<MapPair>`	`getImagingEnvironmentMap(int imageIndex)` Gets the Map value associated with this imaging environment
`Temperature`	`getImagingEnvironmentTemperature(int imageIndex)` Get the Temperature property of ImagingEnvironment.
`String`	`getInstrumentAnnotationRef(int instrumentIndex, int annotationRefIndex)` Get the AnnotationRef property of Instrument.
`int`	`getInstrumentAnnotationRefCount(int instrumentIndex)` Get the number of AnnotationRef elements in Instrument.
`int`	`getInstrumentCount()` Get the number of Instrument elements.
`String`	`getInstrumentID(int instrumentIndex)` Get the ID property of Instrument.
`String`	`getLabelAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Label.
`Color`	`getLabelFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Label.
`FillRule`	`getLabelFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Label.
`FontFamily`	`getLabelFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Label.
`Length`	`getLabelFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Label.
`FontStyle`	`getLabelFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Label.
`String`	`getLabelID(int ROIIndex, int shapeIndex)` Get the ID property of Label.
`LineCap`	`getLabelLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Label.
`Boolean`	`getLabelLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Label.
`Color`	`getLabelStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Label.
`String`	`getLabelStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Label.
`Length`	`getLabelStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Label.
`String`	`getLabelText(int ROIIndex, int shapeIndex)` Get the Text property of Label.
`NonNegativeInteger`	`getLabelTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Label.
`NonNegativeInteger`	`getLabelTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Label.
`NonNegativeInteger`	`getLabelTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Label.
`AffineTransform`	`getLabelTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Label.
`Boolean`	`getLabelVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Label.
`Double`	`getLabelX(int ROIIndex, int shapeIndex)` Get the X property of Label.
`Double`	`getLabelY(int ROIIndex, int shapeIndex)` Get the Y property of Label.
`String`	`getLaserAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Get the AnnotationRef property of Laser.
`PositiveInteger`	`getLaserFrequencyMultiplication(int instrumentIndex, int lightSourceIndex)` Get the FrequencyMultiplication property of Laser.
`String`	`getLaserID(int instrumentIndex, int lightSourceIndex)` Get the ID property of Laser.
`LaserMedium`	`getLaserLaserMedium(int instrumentIndex, int lightSourceIndex)` Get the LaserMedium property of Laser.
`String`	`getLaserLotNumber(int instrumentIndex, int lightSourceIndex)` Get the LotNumber property of Laser.
`String`	`getLaserManufacturer(int instrumentIndex, int lightSourceIndex)` Get the Manufacturer property of Laser.
`String`	`getLaserModel(int instrumentIndex, int lightSourceIndex)` Get the Model property of Laser.
`Boolean`	`getLaserPockelCell(int instrumentIndex, int lightSourceIndex)` Get the PockelCell property of Laser.
`Power`	`getLaserPower(int instrumentIndex, int lightSourceIndex)` Get the Power property of Laser.
`Pulse`	`getLaserPulse(int instrumentIndex, int lightSourceIndex)` Get the Pulse property of Laser.
`String`	`getLaserPump(int instrumentIndex, int lightSourceIndex)` Get the Pump property of Laser.
`Frequency`	`getLaserRepetitionRate(int instrumentIndex, int lightSourceIndex)` Get the RepetitionRate property of Laser.
`String`	`getLaserSerialNumber(int instrumentIndex, int lightSourceIndex)` Get the SerialNumber property of Laser.
`Boolean`	`getLaserTuneable(int instrumentIndex, int lightSourceIndex)` Get the Tuneable property of Laser.
`LaserType`	`getLaserType(int instrumentIndex, int lightSourceIndex)` Get the Type property of Laser.
`Length`	`getLaserWavelength(int instrumentIndex, int lightSourceIndex)` Get the Wavelength property of Laser.
`int`	`getLeaderCount(int experimenterGroupIndex)` Get the number of Leader elements.
`String`	`getLightEmittingDiodeAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Get the AnnotationRef property of LightEmittingDiode.
`String`	`getLightEmittingDiodeID(int instrumentIndex, int lightSourceIndex)` Get the ID property of LightEmittingDiode.
`String`	`getLightEmittingDiodeLotNumber(int instrumentIndex, int lightSourceIndex)` Get the LotNumber property of LightEmittingDiode.
`String`	`getLightEmittingDiodeManufacturer(int instrumentIndex, int lightSourceIndex)` Get the Manufacturer property of LightEmittingDiode.
`String`	`getLightEmittingDiodeModel(int instrumentIndex, int lightSourceIndex)` Get the Model property of LightEmittingDiode.
`Power`	`getLightEmittingDiodePower(int instrumentIndex, int lightSourceIndex)` Get the Power property of LightEmittingDiode.
`String`	`getLightEmittingDiodeSerialNumber(int instrumentIndex, int lightSourceIndex)` Get the SerialNumber property of LightEmittingDiode.
`String`	`getLightPathAnnotationRef(int imageIndex, int channelIndex, int annotationRefIndex)` Get the AnnotationRef property of LightPath.
`int`	`getLightPathAnnotationRefCount(int imageIndex, int channelIndex)` Get the number of AnnotationRef elements in LightPath.
`String`	`getLightPathDichroicRef(int imageIndex, int channelIndex)` Get the DichroicRef property of LightPath.
`String`	`getLightPathEmissionFilterRef(int imageIndex, int channelIndex, int emissionFilterRefIndex)` Get the EmissionFilterRef property of LightPath.
`int`	`getLightPathEmissionFilterRefCount(int imageIndex, int channelIndex)` Get the number of EmissionFilterRef elements in LightPath.
`String`	`getLightPathExcitationFilterRef(int imageIndex, int channelIndex, int excitationFilterRefIndex)` Get the ExcitationFilterRef property of LightPath.
`int`	`getLightPathExcitationFilterRefCount(int imageIndex, int channelIndex)` Get the number of ExcitationFilterRef elements in LightPath.
`int`	`getLightSourceAnnotationRefCount(int instrumentIndex, int lightSourceIndex)` Get the number of AnnotationRef elements in LightSource.
`int`	`getLightSourceCount(int instrumentIndex)` Get the number of LightSource elements.
`String`	`getLightSourceType(int instrumentIndex, int lightSourceIndex)` Get the type of a LightSource.
`String`	`getLineAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Line.
`Color`	`getLineFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Line.
`FillRule`	`getLineFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Line.
`FontFamily`	`getLineFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Line.
`Length`	`getLineFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Line.
`FontStyle`	`getLineFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Line.
`String`	`getLineID(int ROIIndex, int shapeIndex)` Get the ID property of Line.
`LineCap`	`getLineLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Line.
`Boolean`	`getLineLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Line.
`Marker`	`getLineMarkerEnd(int ROIIndex, int shapeIndex)` Get the MarkerEnd property of Line.
`Marker`	`getLineMarkerStart(int ROIIndex, int shapeIndex)` Get the MarkerStart property of Line.
`Color`	`getLineStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Line.
`String`	`getLineStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Line.
`Length`	`getLineStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Line.
`String`	`getLineText(int ROIIndex, int shapeIndex)` Get the Text property of Line.
`NonNegativeInteger`	`getLineTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Line.
`NonNegativeInteger`	`getLineTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Line.
`NonNegativeInteger`	`getLineTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Line.
`AffineTransform`	`getLineTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Line.
`Boolean`	`getLineVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Line.
`Double`	`getLineX1(int ROIIndex, int shapeIndex)` Get the X1 property of Line.
`Double`	`getLineX2(int ROIIndex, int shapeIndex)` Get the X2 property of Line.
`Double`	`getLineY1(int ROIIndex, int shapeIndex)` Get the Y1 property of Line.
`Double`	`getLineY2(int ROIIndex, int shapeIndex)` Get the Y2 property of Line.
`int`	`getListAnnotationAnnotationCount(int listAnnotationIndex)` Get the number of links to a ListAnnotation.
`String`	`getListAnnotationAnnotationRef(int listAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of ListAnnotation.
`String`	`getListAnnotationAnnotator(int listAnnotationIndex)` Get the Annotator property of ListAnnotation.
`int`	`getListAnnotationCount()` Get the number of ListAnnotation elements.
`String`	`getListAnnotationDescription(int listAnnotationIndex)` Get the Description property of ListAnnotation.
`String`	`getListAnnotationID(int listAnnotationIndex)` Get the ID property of ListAnnotation.
`String`	`getListAnnotationNamespace(int listAnnotationIndex)` Get the Namespace property of ListAnnotation.
`int`	`getLongAnnotationAnnotationCount(int longAnnotationIndex)` Get the number of links to a LongAnnotation.
`String`	`getLongAnnotationAnnotationRef(int longAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of LongAnnotation.
`String`	`getLongAnnotationAnnotator(int longAnnotationIndex)` Get the Annotator property of LongAnnotation.
`int`	`getLongAnnotationCount()` Get the number of LongAnnotation elements.
`String`	`getLongAnnotationDescription(int longAnnotationIndex)` Get the Description property of LongAnnotation.
`String`	`getLongAnnotationID(int longAnnotationIndex)` Get the ID property of LongAnnotation.
`String`	`getLongAnnotationNamespace(int longAnnotationIndex)` Get the Namespace property of LongAnnotation.
`Long`	`getLongAnnotationValue(int longAnnotationIndex)` Get the Value property of LongAnnotation.
`int`	`getMapAnnotationAnnotationCount(int mapAnnotationIndex)` Get the number of links to a MapAnnotation.
`String`	`getMapAnnotationAnnotationRef(int mapAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of MapAnnotation.
`String`	`getMapAnnotationAnnotator(int mapAnnotationIndex)` Get the Annotator property of MapAnnotation.
`int`	`getMapAnnotationCount()` Get the number of MapAnnotation elements.
`String`	`getMapAnnotationDescription(int mapAnnotationIndex)` Get the Description property of MapAnnotation.
`String`	`getMapAnnotationID(int mapAnnotationIndex)` Get the ID property of MapAnnotation.
`String`	`getMapAnnotationNamespace(int mapAnnotationIndex)` Get the Namespace property of MapAnnotation.
`List<MapPair>`	`getMapAnnotationValue(int mapAnnotationIndex)` Gets the Map value associated with this annotation
`String`	`getMaskAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Mask.
`Color`	`getMaskFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Mask.
`FillRule`	`getMaskFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Mask.
`FontFamily`	`getMaskFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Mask.
`Length`	`getMaskFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Mask.
`FontStyle`	`getMaskFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Mask.
`Double`	`getMaskHeight(int ROIIndex, int shapeIndex)` Get the Height property of Mask.
`String`	`getMaskID(int ROIIndex, int shapeIndex)` Get the ID property of Mask.
`LineCap`	`getMaskLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Mask.
`Boolean`	`getMaskLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Mask.
`Color`	`getMaskStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Mask.
`String`	`getMaskStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Mask.
`Length`	`getMaskStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Mask.
`String`	`getMaskText(int ROIIndex, int shapeIndex)` Get the Text property of Mask.
`NonNegativeInteger`	`getMaskTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Mask.
`NonNegativeInteger`	`getMaskTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Mask.
`NonNegativeInteger`	`getMaskTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Mask.
`AffineTransform`	`getMaskTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Mask.
`Boolean`	`getMaskVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Mask.
`Double`	`getMaskWidth(int ROIIndex, int shapeIndex)` Get the Width property of Mask.
`Double`	`getMaskX(int ROIIndex, int shapeIndex)` Get the X property of Mask.
`Double`	`getMaskY(int ROIIndex, int shapeIndex)` Get the Y property of Mask.
`int`	`getMicrobeamManipulationCount(int experimentIndex)` Get the number of MicrobeamManipulation elements.
`String`	`getMicrobeamManipulationDescription(int experimentIndex, int microbeamManipulationIndex)` Get the Description property of MicrobeamManipulation.
`String`	`getMicrobeamManipulationExperimenterRef(int experimentIndex, int microbeamManipulationIndex)` Get the ExperimenterRef property of MicrobeamManipulation.
`String`	`getMicrobeamManipulationID(int experimentIndex, int microbeamManipulationIndex)` Get the ID property of MicrobeamManipulation.
`PercentFraction`	`getMicrobeamManipulationLightSourceSettingsAttenuation(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Get the Attenuation property of LightSourceSettings.
`int`	`getMicrobeamManipulationLightSourceSettingsCount(int experimentIndex, int microbeamManipulationIndex)` Get the number of LightSourceSettings elements in MicrobeamManipulation.
`String`	`getMicrobeamManipulationLightSourceSettingsID(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Get the ID property of LightSourceSettings.
`Length`	`getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Get the Wavelength property of LightSourceSettings.
`int`	`getMicrobeamManipulationRefCount(int imageIndex)` Get the number of MicrobeamManipulationRef elements.
`String`	`getMicrobeamManipulationROIRef(int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)` Get the ROIRef property of MicrobeamManipulation.
`int`	`getMicrobeamManipulationROIRefCount(int experimentIndex, int microbeamManipulationIndex)` Get the number of ROIRef elements in MicrobeamManipulation.
`MicrobeamManipulationType`	`getMicrobeamManipulationType(int experimentIndex, int microbeamManipulationIndex)` Get the Type property of MicrobeamManipulation.
`String`	`getMicroscopeLotNumber(int instrumentIndex)` Get the LotNumber property of Microscope.
`String`	`getMicroscopeManufacturer(int instrumentIndex)` Get the Manufacturer property of Microscope.
`String`	`getMicroscopeModel(int instrumentIndex)` Get the Model property of Microscope.
`String`	`getMicroscopeSerialNumber(int instrumentIndex)` Get the SerialNumber property of Microscope.
`MicroscopeType`	`getMicroscopeType(int instrumentIndex)` Get the Type property of Microscope.
`String`	`getObjectiveAnnotationRef(int instrumentIndex, int objectiveIndex, int annotationRefIndex)` Get the AnnotationRef property of Objective.
`int`	`getObjectiveAnnotationRefCount(int instrumentIndex, int objectiveIndex)` Get the number of AnnotationRef elements in Objective.
`Double`	`getObjectiveCalibratedMagnification(int instrumentIndex, int objectiveIndex)` Get the CalibratedMagnification property of Objective.
`Correction`	`getObjectiveCorrection(int instrumentIndex, int objectiveIndex)` Get the Correction property of Objective.
`int`	`getObjectiveCount(int instrumentIndex)` Get the number of Objective elements.
`String`	`getObjectiveID(int instrumentIndex, int objectiveIndex)` Get the ID property of Objective.
`Immersion`	`getObjectiveImmersion(int instrumentIndex, int objectiveIndex)` Get the Immersion property of Objective.
`Boolean`	`getObjectiveIris(int instrumentIndex, int objectiveIndex)` Get the Iris property of Objective.
`Double`	`getObjectiveLensNA(int instrumentIndex, int objectiveIndex)` Get the LensNA property of Objective.
`String`	`getObjectiveLotNumber(int instrumentIndex, int objectiveIndex)` Get the LotNumber property of Objective.
`String`	`getObjectiveManufacturer(int instrumentIndex, int objectiveIndex)` Get the Manufacturer property of Objective.
`String`	`getObjectiveModel(int instrumentIndex, int objectiveIndex)` Get the Model property of Objective.
`Double`	`getObjectiveNominalMagnification(int instrumentIndex, int objectiveIndex)` Get the NominalMagnification property of Objective.
`String`	`getObjectiveSerialNumber(int instrumentIndex, int objectiveIndex)` Get the SerialNumber property of Objective.
`Double`	`getObjectiveSettingsCorrectionCollar(int imageIndex)` Get the CorrectionCollar property of ObjectiveSettings.
`String`	`getObjectiveSettingsID(int imageIndex)` Get the ID property of ObjectiveSettings.
`Medium`	`getObjectiveSettingsMedium(int imageIndex)` Get the Medium property of ObjectiveSettings.
`Double`	`getObjectiveSettingsRefractiveIndex(int imageIndex)` Get the RefractiveIndex property of ObjectiveSettings.
`Length`	`getObjectiveWorkingDistance(int instrumentIndex, int objectiveIndex)` Get the WorkingDistance property of Objective.
`Boolean`	`getPixelsBigEndian(int imageIndex)` Get the BigEndian property of Pixels.
`Boolean`	`getPixelsBinDataBigEndian(int imageIndex, int binDataIndex)` Get the BigEndian property of Pixels.
`int`	`getPixelsBinDataCount(int imageIndex)` Get the number of BinData elements in Pixels.
`DimensionOrder`	`getPixelsDimensionOrder(int imageIndex)` Get the DimensionOrder property of Pixels.
`String`	`getPixelsID(int imageIndex)` Get the ID property of Pixels.
`Boolean`	`getPixelsInterleaved(int imageIndex)` Get the Interleaved property of Pixels.
`Length`	`getPixelsPhysicalSizeX(int imageIndex)` Get the PhysicalSizeX property of Pixels.
`Length`	`getPixelsPhysicalSizeY(int imageIndex)` Get the PhysicalSizeY property of Pixels.
`Length`	`getPixelsPhysicalSizeZ(int imageIndex)` Get the PhysicalSizeZ property of Pixels.
`PositiveInteger`	`getPixelsSignificantBits(int imageIndex)` Get the SignificantBits property of Pixels.
`PositiveInteger`	`getPixelsSizeC(int imageIndex)` Get the SizeC property of Pixels.
`PositiveInteger`	`getPixelsSizeT(int imageIndex)` Get the SizeT property of Pixels.
`PositiveInteger`	`getPixelsSizeX(int imageIndex)` Get the SizeX property of Pixels.
`PositiveInteger`	`getPixelsSizeY(int imageIndex)` Get the SizeY property of Pixels.
`PositiveInteger`	`getPixelsSizeZ(int imageIndex)` Get the SizeZ property of Pixels.
`Time`	`getPixelsTimeIncrement(int imageIndex)` Get the TimeIncrement property of Pixels.
`PixelType`	`getPixelsType(int imageIndex)` Get the Type property of Pixels.
`String`	`getPlaneAnnotationRef(int imageIndex, int planeIndex, int annotationRefIndex)` Get the AnnotationRef property of Plane.
`int`	`getPlaneAnnotationRefCount(int imageIndex, int planeIndex)` Get the number of AnnotationRef elements in Plane.
`int`	`getPlaneCount(int imageIndex)` Get the number of Plane elements.
`Time`	`getPlaneDeltaT(int imageIndex, int planeIndex)` Get the DeltaT property of Plane.
`Time`	`getPlaneExposureTime(int imageIndex, int planeIndex)` Get the ExposureTime property of Plane.
`String`	`getPlaneHashSHA1(int imageIndex, int planeIndex)` Get the HashSHA1 property of Plane.
`Length`	`getPlanePositionX(int imageIndex, int planeIndex)` Get the PositionX property of Plane.
`Length`	`getPlanePositionY(int imageIndex, int planeIndex)` Get the PositionY property of Plane.
`Length`	`getPlanePositionZ(int imageIndex, int planeIndex)` Get the PositionZ property of Plane.
`NonNegativeInteger`	`getPlaneTheC(int imageIndex, int planeIndex)` Get the TheC property of Plane.
`NonNegativeInteger`	`getPlaneTheT(int imageIndex, int planeIndex)` Get the TheT property of Plane.
`NonNegativeInteger`	`getPlaneTheZ(int imageIndex, int planeIndex)` Get the TheZ property of Plane.
`String`	`getPlateAcquisitionAnnotationRef(int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)` Get the AnnotationRef property of PlateAcquisition.
`int`	`getPlateAcquisitionAnnotationRefCount(int plateIndex, int plateAcquisitionIndex)` Get the number of AnnotationRef elements in PlateAcquisition.
`int`	`getPlateAcquisitionCount(int plateIndex)` Get the number of PlateAcquisition elements.
`String`	`getPlateAcquisitionDescription(int plateIndex, int plateAcquisitionIndex)` Get the Description property of PlateAcquisition.
`Timestamp`	`getPlateAcquisitionEndTime(int plateIndex, int plateAcquisitionIndex)` Get the EndTime property of PlateAcquisition.
`String`	`getPlateAcquisitionID(int plateIndex, int plateAcquisitionIndex)` Get the ID property of PlateAcquisition.
`PositiveInteger`	`getPlateAcquisitionMaximumFieldCount(int plateIndex, int plateAcquisitionIndex)` Get the MaximumFieldCount property of PlateAcquisition.
`String`	`getPlateAcquisitionName(int plateIndex, int plateAcquisitionIndex)` Get the Name property of PlateAcquisition.
`Timestamp`	`getPlateAcquisitionStartTime(int plateIndex, int plateAcquisitionIndex)` Get the StartTime property of PlateAcquisition.
`String`	`getPlateAcquisitionWellSampleRef(int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)` Get the WellSampleRef property of PlateAcquisition.
`String`	`getPlateAnnotationRef(int plateIndex, int annotationRefIndex)` Get the AnnotationRef property of Plate.
`int`	`getPlateAnnotationRefCount(int plateIndex)` Get the number of AnnotationRef elements in Plate.
`NamingConvention`	`getPlateColumnNamingConvention(int plateIndex)` Get the ColumnNamingConvention property of Plate.
`PositiveInteger`	`getPlateColumns(int plateIndex)` Get the Columns property of Plate.
`int`	`getPlateCount()` Get the number of Plate elements.
`String`	`getPlateDescription(int plateIndex)` Get the Description property of Plate.
`String`	`getPlateExternalIdentifier(int plateIndex)` Get the ExternalIdentifier property of Plate.
`NonNegativeInteger`	`getPlateFieldIndex(int plateIndex)` Get the FieldIndex property of Plate.
`String`	`getPlateID(int plateIndex)` Get the ID property of Plate.
`String`	`getPlateName(int plateIndex)` Get the Name property of Plate.
`int`	`getPlateRefCount(int screenIndex)` Get the number of PlateRef elements.
`NamingConvention`	`getPlateRowNamingConvention(int plateIndex)` Get the RowNamingConvention property of Plate.
`PositiveInteger`	`getPlateRows(int plateIndex)` Get the Rows property of Plate.
`String`	`getPlateStatus(int plateIndex)` Get the Status property of Plate.
`Length`	`getPlateWellOriginX(int plateIndex)` Get the WellOriginX property of Plate.
`Length`	`getPlateWellOriginY(int plateIndex)` Get the WellOriginY property of Plate.
`String`	`getPointAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Point.
`Color`	`getPointFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Point.
`FillRule`	`getPointFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Point.
`FontFamily`	`getPointFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Point.
`Length`	`getPointFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Point.
`FontStyle`	`getPointFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Point.
`String`	`getPointID(int ROIIndex, int shapeIndex)` Get the ID property of Point.
`LineCap`	`getPointLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Point.
`Boolean`	`getPointLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Point.
`Color`	`getPointStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Point.
`String`	`getPointStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Point.
`Length`	`getPointStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Point.
`String`	`getPointText(int ROIIndex, int shapeIndex)` Get the Text property of Point.
`NonNegativeInteger`	`getPointTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Point.
`NonNegativeInteger`	`getPointTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Point.
`NonNegativeInteger`	`getPointTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Point.
`AffineTransform`	`getPointTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Point.
`Boolean`	`getPointVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Point.
`Double`	`getPointX(int ROIIndex, int shapeIndex)` Get the X property of Point.
`Double`	`getPointY(int ROIIndex, int shapeIndex)` Get the Y property of Point.
`String`	`getPolygonAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Polygon.
`Color`	`getPolygonFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Polygon.
`FillRule`	`getPolygonFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Polygon.
`FontFamily`	`getPolygonFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Polygon.
`Length`	`getPolygonFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Polygon.
`FontStyle`	`getPolygonFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Polygon.
`String`	`getPolygonID(int ROIIndex, int shapeIndex)` Get the ID property of Polygon.
`LineCap`	`getPolygonLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Polygon.
`Boolean`	`getPolygonLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Polygon.
`String`	`getPolygonPoints(int ROIIndex, int shapeIndex)` Get the Points property of Polygon.
`Color`	`getPolygonStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Polygon.
`String`	`getPolygonStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Polygon.
`Length`	`getPolygonStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Polygon.
`String`	`getPolygonText(int ROIIndex, int shapeIndex)` Get the Text property of Polygon.
`NonNegativeInteger`	`getPolygonTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Polygon.
`NonNegativeInteger`	`getPolygonTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Polygon.
`NonNegativeInteger`	`getPolygonTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Polygon.
`AffineTransform`	`getPolygonTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Polygon.
`Boolean`	`getPolygonVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Polygon.
`String`	`getPolylineAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Polyline.
`Color`	`getPolylineFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Polyline.
`FillRule`	`getPolylineFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Polyline.
`FontFamily`	`getPolylineFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Polyline.
`Length`	`getPolylineFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Polyline.
`FontStyle`	`getPolylineFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Polyline.
`String`	`getPolylineID(int ROIIndex, int shapeIndex)` Get the ID property of Polyline.
`LineCap`	`getPolylineLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Polyline.
`Boolean`	`getPolylineLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Polyline.
`Marker`	`getPolylineMarkerEnd(int ROIIndex, int shapeIndex)` Get the MarkerEnd property of Polyline.
`Marker`	`getPolylineMarkerStart(int ROIIndex, int shapeIndex)` Get the MarkerStart property of Polyline.
`String`	`getPolylinePoints(int ROIIndex, int shapeIndex)` Get the Points property of Polyline.
`Color`	`getPolylineStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Polyline.
`String`	`getPolylineStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Polyline.
`Length`	`getPolylineStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Polyline.
`String`	`getPolylineText(int ROIIndex, int shapeIndex)` Get the Text property of Polyline.
`NonNegativeInteger`	`getPolylineTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Polyline.
`NonNegativeInteger`	`getPolylineTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Polyline.
`NonNegativeInteger`	`getPolylineTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Polyline.
`AffineTransform`	`getPolylineTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Polyline.
`Boolean`	`getPolylineVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Polyline.
`String`	`getProjectAnnotationRef(int projectIndex, int annotationRefIndex)` Get the AnnotationRef property of Project.
`int`	`getProjectAnnotationRefCount(int projectIndex)` Get the number of AnnotationRef elements in Project.
`int`	`getProjectCount()` Get the number of Project elements.
`String`	`getProjectDatasetRef(int projectIndex, int datasetRefIndex)` Get the DatasetRef property of Project.
`String`	`getProjectDescription(int projectIndex)` Get the Description property of Project.
`String`	`getProjectExperimenterGroupRef(int projectIndex)` Get the ExperimenterGroupRef property of Project.
`String`	`getProjectExperimenterRef(int projectIndex)` Get the ExperimenterRef property of Project.
`String`	`getProjectID(int projectIndex)` Get the ID property of Project.
`String`	`getProjectName(int projectIndex)` Get the Name property of Project.
`String`	`getReagentAnnotationRef(int screenIndex, int reagentIndex, int annotationRefIndex)` Get the AnnotationRef property of Reagent.
`int`	`getReagentAnnotationRefCount(int screenIndex, int reagentIndex)` Get the number of AnnotationRef elements in Reagent.
`int`	`getReagentCount(int screenIndex)` Get the number of Reagent elements.
`String`	`getReagentDescription(int screenIndex, int reagentIndex)` Get the Description property of Reagent.
`String`	`getReagentID(int screenIndex, int reagentIndex)` Get the ID property of Reagent.
`String`	`getReagentName(int screenIndex, int reagentIndex)` Get the Name property of Reagent.
`String`	`getReagentReagentIdentifier(int screenIndex, int reagentIndex)` Get the ReagentIdentifier property of Reagent.
`String`	`getRectangleAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)` Get the AnnotationRef property of Rectangle.
`Color`	`getRectangleFillColor(int ROIIndex, int shapeIndex)` Get the FillColor property of Rectangle.
`FillRule`	`getRectangleFillRule(int ROIIndex, int shapeIndex)` Get the FillRule property of Rectangle.
`FontFamily`	`getRectangleFontFamily(int ROIIndex, int shapeIndex)` Get the FontFamily property of Rectangle.
`Length`	`getRectangleFontSize(int ROIIndex, int shapeIndex)` Get the FontSize property of Rectangle.
`FontStyle`	`getRectangleFontStyle(int ROIIndex, int shapeIndex)` Get the FontStyle property of Rectangle.
`Double`	`getRectangleHeight(int ROIIndex, int shapeIndex)` Get the Height property of Rectangle.
`String`	`getRectangleID(int ROIIndex, int shapeIndex)` Get the ID property of Rectangle.
`LineCap`	`getRectangleLineCap(int ROIIndex, int shapeIndex)` Get the LineCap property of Rectangle.
`Boolean`	`getRectangleLocked(int ROIIndex, int shapeIndex)` Get the Locked property of Rectangle.
`Color`	`getRectangleStrokeColor(int ROIIndex, int shapeIndex)` Get the StrokeColor property of Rectangle.
`String`	`getRectangleStrokeDashArray(int ROIIndex, int shapeIndex)` Get the StrokeDashArray property of Rectangle.
`Length`	`getRectangleStrokeWidth(int ROIIndex, int shapeIndex)` Get the StrokeWidth property of Rectangle.
`String`	`getRectangleText(int ROIIndex, int shapeIndex)` Get the Text property of Rectangle.
`NonNegativeInteger`	`getRectangleTheC(int ROIIndex, int shapeIndex)` Get the TheC property of Rectangle.
`NonNegativeInteger`	`getRectangleTheT(int ROIIndex, int shapeIndex)` Get the TheT property of Rectangle.
`NonNegativeInteger`	`getRectangleTheZ(int ROIIndex, int shapeIndex)` Get the TheZ property of Rectangle.
`AffineTransform`	`getRectangleTransform(int ROIIndex, int shapeIndex)` Get the Transform property of Rectangle.
`Boolean`	`getRectangleVisible(int ROIIndex, int shapeIndex)` Get the Visible property of Rectangle.
`Double`	`getRectangleWidth(int ROIIndex, int shapeIndex)` Get the Width property of Rectangle.
`Double`	`getRectangleX(int ROIIndex, int shapeIndex)` Get the X property of Rectangle.
`Double`	`getRectangleY(int ROIIndex, int shapeIndex)` Get the Y property of Rectangle.
`String`	`getRightsRightsHeld()` Get the RightsHeld property of Rights.
`String`	`getRightsRightsHolder()` Get the RightsHolder property of Rights.
`String`	`getROIAnnotationRef(int ROIIndex, int annotationRefIndex)` Get the AnnotationRef property of ROI.
`int`	`getROIAnnotationRefCount(int ROIIndex)` Get the number of AnnotationRef elements in ROI.
`int`	`getROICount()` Get the number of ROI elements.
`String`	`getROIDescription(int ROIIndex)` Get the Description property of ROI.
`String`	`getROIID(int ROIIndex)` Get the ID property of ROI.
`String`	`getROIName(int ROIIndex)` Get the Name property of ROI.
`String`	`getROINamespace(int ROIIndex)` Get the Namespace property of ROI.
`MetadataRoot`	`getRoot()` Get the root node of the metadata.
`String`	`getScreenAnnotationRef(int screenIndex, int annotationRefIndex)` Get the AnnotationRef property of Screen.
`int`	`getScreenAnnotationRefCount(int screenIndex)` Get the number of AnnotationRef elements in Screen.
`int`	`getScreenCount()` Get the number of Screen elements.
`String`	`getScreenDescription(int screenIndex)` Get the Description property of Screen.
`String`	`getScreenID(int screenIndex)` Get the ID property of Screen.
`String`	`getScreenName(int screenIndex)` Get the Name property of Screen.
`String`	`getScreenPlateRef(int screenIndex, int plateRefIndex)` Get the PlateRef property of Screen.
`String`	`getScreenProtocolDescription(int screenIndex)` Get the ProtocolDescription property of Screen.
`String`	`getScreenProtocolIdentifier(int screenIndex)` Get the ProtocolIdentifier property of Screen.
`String`	`getScreenReagentSetDescription(int screenIndex)` Get the ReagentSetDescription property of Screen.
`String`	`getScreenReagentSetIdentifier(int screenIndex)` Get the ReagentSetIdentifier property of Screen.
`String`	`getScreenType(int screenIndex)` Get the Type property of Screen.
`int`	`getShapeAnnotationRefCount(int ROIIndex, int shapeIndex)` Get the number of AnnotationRef elements in Shape.
`int`	`getShapeCount(int ROIIndex)` Get the number of Shape elements.
`String`	`getShapeType(int roiIndex, int shapeIndex)` Get the type of a Shape.
`String`	`getStageLabelName(int imageIndex)` Get the Name property of StageLabel.
`Length`	`getStageLabelX(int imageIndex)` Get the X property of StageLabel.
`Length`	`getStageLabelY(int imageIndex)` Get the Y property of StageLabel.
`Length`	`getStageLabelZ(int imageIndex)` Get the Z property of StageLabel.
`int`	`getTagAnnotationAnnotationCount(int tagAnnotationIndex)` Get the number of links to a TagAnnotation.
`String`	`getTagAnnotationAnnotationRef(int tagAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of TagAnnotation.
`String`	`getTagAnnotationAnnotator(int tagAnnotationIndex)` Get the Annotator property of TagAnnotation.
`int`	`getTagAnnotationCount()` Get the number of TagAnnotation elements.
`String`	`getTagAnnotationDescription(int tagAnnotationIndex)` Get the Description property of TagAnnotation.
`String`	`getTagAnnotationID(int tagAnnotationIndex)` Get the ID property of TagAnnotation.
`String`	`getTagAnnotationNamespace(int tagAnnotationIndex)` Get the Namespace property of TagAnnotation.
`String`	`getTagAnnotationValue(int tagAnnotationIndex)` Get the Value property of TagAnnotation.
`int`	`getTermAnnotationAnnotationCount(int termAnnotationIndex)` Get the number of links to a TermAnnotation.
`String`	`getTermAnnotationAnnotationRef(int termAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of TermAnnotation.
`String`	`getTermAnnotationAnnotator(int termAnnotationIndex)` Get the Annotator property of TermAnnotation.
`int`	`getTermAnnotationCount()` Get the number of TermAnnotation elements.
`String`	`getTermAnnotationDescription(int termAnnotationIndex)` Get the Description property of TermAnnotation.
`String`	`getTermAnnotationID(int termAnnotationIndex)` Get the ID property of TermAnnotation.
`String`	`getTermAnnotationNamespace(int termAnnotationIndex)` Get the Namespace property of TermAnnotation.
`String`	`getTermAnnotationValue(int termAnnotationIndex)` Get the Value property of TermAnnotation.
`int`	`getTiffDataCount(int imageIndex)` Get the number of TiffData elements.
`NonNegativeInteger`	`getTiffDataFirstC(int imageIndex, int tiffDataIndex)` Get the FirstC property of TiffData.
`NonNegativeInteger`	`getTiffDataFirstT(int imageIndex, int tiffDataIndex)` Get the FirstT property of TiffData.
`NonNegativeInteger`	`getTiffDataFirstZ(int imageIndex, int tiffDataIndex)` Get the FirstZ property of TiffData.
`NonNegativeInteger`	`getTiffDataIFD(int imageIndex, int tiffDataIndex)` Get the IFD property of TiffData.
`NonNegativeInteger`	`getTiffDataPlaneCount(int imageIndex, int tiffDataIndex)` Get the PlaneCount property of TiffData.
`int`	`getTimestampAnnotationAnnotationCount(int timestampAnnotationIndex)` Get the number of links to a TimestampAnnotation.
`String`	`getTimestampAnnotationAnnotationRef(int timestampAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of TimestampAnnotation.
`String`	`getTimestampAnnotationAnnotator(int timestampAnnotationIndex)` Get the Annotator property of TimestampAnnotation.
`int`	`getTimestampAnnotationCount()` Get the number of TimestampAnnotation elements.
`String`	`getTimestampAnnotationDescription(int timestampAnnotationIndex)` Get the Description property of TimestampAnnotation.
`String`	`getTimestampAnnotationID(int timestampAnnotationIndex)` Get the ID property of TimestampAnnotation.
`String`	`getTimestampAnnotationNamespace(int timestampAnnotationIndex)` Get the Namespace property of TimestampAnnotation.
`Timestamp`	`getTimestampAnnotationValue(int timestampAnnotationIndex)` Get the Value property of TimestampAnnotation.
`Length`	`getTransmittanceRangeCutIn(int instrumentIndex, int filterIndex)` Get the CutIn property of TransmittanceRange.
`Length`	`getTransmittanceRangeCutInTolerance(int instrumentIndex, int filterIndex)` Get the CutInTolerance property of TransmittanceRange.
`Length`	`getTransmittanceRangeCutOut(int instrumentIndex, int filterIndex)` Get the CutOut property of TransmittanceRange.
`Length`	`getTransmittanceRangeCutOutTolerance(int instrumentIndex, int filterIndex)` Get the CutOutTolerance property of TransmittanceRange.
`PercentFraction`	`getTransmittanceRangeTransmittance(int instrumentIndex, int filterIndex)` Get the Transmittance property of TransmittanceRange.
`String`	`getUUID()` Gets the UUID associated with this collection of metadata.
`String`	`getUUIDFileName(int imageIndex, int tiffDataIndex)` Get the FileName property of UUID.
`String`	`getUUIDValue(int imageIndex, int tiffDataIndex)` Get the text value of UUID.
`String`	`getWellAnnotationRef(int plateIndex, int wellIndex, int annotationRefIndex)` Get the AnnotationRef property of Well.
`int`	`getWellAnnotationRefCount(int plateIndex, int wellIndex)` Get the number of AnnotationRef elements in Well.
`Color`	`getWellColor(int plateIndex, int wellIndex)` Get the Color property of Well.
`NonNegativeInteger`	`getWellColumn(int plateIndex, int wellIndex)` Get the Column property of Well.
`int`	`getWellCount(int plateIndex)` Get the number of Well elements.
`String`	`getWellExternalDescription(int plateIndex, int wellIndex)` Get the ExternalDescription property of Well.
`String`	`getWellExternalIdentifier(int plateIndex, int wellIndex)` Get the ExternalIdentifier property of Well.
`String`	`getWellID(int plateIndex, int wellIndex)` Get the ID property of Well.
`String`	`getWellReagentRef(int plateIndex, int wellIndex)` Get the ReagentRef property of Well.
`NonNegativeInteger`	`getWellRow(int plateIndex, int wellIndex)` Get the Row property of Well.
`int`	`getWellSampleCount(int plateIndex, int wellIndex)` Get the number of WellSample elements.
`String`	`getWellSampleID(int plateIndex, int wellIndex, int wellSampleIndex)` Get the ID property of WellSample.
`String`	`getWellSampleImageRef(int plateIndex, int wellIndex, int wellSampleIndex)` Get the ImageRef property of WellSample.
`NonNegativeInteger`	`getWellSampleIndex(int plateIndex, int wellIndex, int wellSampleIndex)` Get the Index property of WellSample.
`Length`	`getWellSamplePositionX(int plateIndex, int wellIndex, int wellSampleIndex)` Get the PositionX property of WellSample.
`Length`	`getWellSamplePositionY(int plateIndex, int wellIndex, int wellSampleIndex)` Get the PositionY property of WellSample.
`int`	`getWellSampleRefCount(int plateIndex, int plateAcquisitionIndex)` Get the number of WellSampleRef elements.
`Timestamp`	`getWellSampleTimepoint(int plateIndex, int wellIndex, int wellSampleIndex)` Get the Timepoint property of WellSample.
`String`	`getWellType(int plateIndex, int wellIndex)` Get the Type property of Well.
`int`	`getXMLAnnotationAnnotationCount(int xmlAnnotationIndex)` Get the number of links to an XMLAnnotation.
`String`	`getXMLAnnotationAnnotationRef(int XMLAnnotationIndex, int annotationRefIndex)` Get the AnnotationRef property of XMLAnnotation.
`String`	`getXMLAnnotationAnnotator(int XMLAnnotationIndex)` Get the Annotator property of XMLAnnotation.
`int`	`getXMLAnnotationCount()` Get the number of XMLAnnotation elements.
`String`	`getXMLAnnotationDescription(int XMLAnnotationIndex)` Get the Description property of XMLAnnotation.
`String`	`getXMLAnnotationID(int XMLAnnotationIndex)` Get the ID property of XMLAnnotation.
`String`	`getXMLAnnotationNamespace(int XMLAnnotationIndex)` Get the Namespace property of XMLAnnotation.
`String`	`getXMLAnnotationValue(int XMLAnnotationIndex)` Get the Value property of XMLAnnotation.
`int`	`resolveReferences()` Resolve model object cross-references.
`void`	`setArcAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of Arc.
`void`	`setArcID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of Arc.
`void`	`setArcLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of Arc.
`void`	`setArcManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of Arc.
`void`	`setArcModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of Arc.
`void`	`setArcPower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of Arc.
`void`	`setArcSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of Arc.
`void`	`setArcType(ArcType type, int instrumentIndex, int lightSourceIndex)` Set the Type property of Arc.
`void`	`setBinaryFileFileName(String fileName, int fileAnnotationIndex)` Set the FileName property of BinaryFile.
`void`	`setBinaryFileMIMEType(String mimeType, int fileAnnotationIndex)` Set the MIMEType property of BinaryFile.
`void`	`setBinaryFileSize(NonNegativeLong size, int fileAnnotationIndex)` Set the Size property of BinaryFile.
`void`	`setBinaryOnlyMetadataFile(String metadataFile)` Set the MetadataFile property of BinaryOnly.
`void`	`setBinaryOnlyUUID(String uuid)` Set the UUID property of BinaryOnly.
`void`	`setBooleanAnnotationAnnotationRef(String annotation, int booleanAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of BooleanAnnotation.
`void`	`setBooleanAnnotationAnnotator(String annotator, int booleanAnnotationIndex)` Set the Annotator property of BooleanAnnotation.
`void`	`setBooleanAnnotationDescription(String description, int booleanAnnotationIndex)` Set the Description property of BooleanAnnotation.
`void`	`setBooleanAnnotationID(String id, int booleanAnnotationIndex)` Set the ID property of BooleanAnnotation.
`void`	`setBooleanAnnotationNamespace(String namespace, int booleanAnnotationIndex)` Set the Namespace property of BooleanAnnotation.
`void`	`setBooleanAnnotationValue(Boolean value, int booleanAnnotationIndex)` Set the Value property of BooleanAnnotation.
`void`	`setChannelAcquisitionMode(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)` Set the AcquisitionMode property of Channel.
`void`	`setChannelAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)` Set the AnnotationRef property of Channel.
`void`	`setChannelColor(Color color, int imageIndex, int channelIndex)` Set the Color property of Channel.
`void`	`setChannelContrastMethod(ContrastMethod contrastMethod, int imageIndex, int channelIndex)` Set the ContrastMethod property of Channel.
`void`	`setChannelEmissionWavelength(Length emissionWavelength, int imageIndex, int channelIndex)` Set the EmissionWavelength property of Channel.
`void`	`setChannelExcitationWavelength(Length excitationWavelength, int imageIndex, int channelIndex)` Set the ExcitationWavelength property of Channel.
`void`	`setChannelFilterSetRef(String filterSet, int imageIndex, int channelIndex)` Set the FilterSetRef property of Channel.
`void`	`setChannelFluor(String fluor, int imageIndex, int channelIndex)` Set the Fluor property of Channel.
`void`	`setChannelID(String id, int imageIndex, int channelIndex)` Set the ID property of Channel.
`void`	`setChannelIlluminationType(IlluminationType illuminationType, int imageIndex, int channelIndex)` Set the IlluminationType property of Channel.
`void`	`setChannelLightSourceSettingsAttenuation(PercentFraction attenuation, int imageIndex, int channelIndex)` Set the Attenuation property of LightSourceSettings.
`void`	`setChannelLightSourceSettingsID(String id, int imageIndex, int channelIndex)` Set the ID property of LightSourceSettings.
`void`	`setChannelLightSourceSettingsWavelength(Length wavelength, int imageIndex, int channelIndex)` Set the Wavelength property of LightSourceSettings.
`void`	`setChannelName(String name, int imageIndex, int channelIndex)` Set the Name property of Channel.
`void`	`setChannelNDFilter(Double ndFilter, int imageIndex, int channelIndex)` Set the NDFilter property of Channel.
`void`	`setChannelPinholeSize(Length pinholeSize, int imageIndex, int channelIndex)` Set the PinholeSize property of Channel.
`void`	`setChannelPockelCellSetting(Integer pockelCellSetting, int imageIndex, int channelIndex)` Set the PockelCellSetting property of Channel.
`void`	`setChannelSamplesPerPixel(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)` Set the SamplesPerPixel property of Channel.
`void`	`setCommentAnnotationAnnotationRef(String annotation, int commentAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of CommentAnnotation.
`void`	`setCommentAnnotationAnnotator(String annotator, int commentAnnotationIndex)` Set the Annotator property of CommentAnnotation.
`void`	`setCommentAnnotationDescription(String description, int commentAnnotationIndex)` Set the Description property of CommentAnnotation.
`void`	`setCommentAnnotationID(String id, int commentAnnotationIndex)` Set the ID property of CommentAnnotation.
`void`	`setCommentAnnotationNamespace(String namespace, int commentAnnotationIndex)` Set the Namespace property of CommentAnnotation.
`void`	`setCommentAnnotationValue(String value, int commentAnnotationIndex)` Set the Value property of CommentAnnotation.
`void`	`setDatasetAnnotationRef(String annotation, int datasetIndex, int annotationRefIndex)` Set the AnnotationRef property of Dataset.
`void`	`setDatasetDescription(String description, int datasetIndex)` Set the Description property of Dataset.
`void`	`setDatasetExperimenterGroupRef(String experimenterGroup, int datasetIndex)` Set the ExperimenterGroupRef property of Dataset.
`void`	`setDatasetExperimenterRef(String experimenter, int datasetIndex)` Set the ExperimenterRef property of Dataset.
`void`	`setDatasetID(String id, int datasetIndex)` Set the ID property of Dataset.
`void`	`setDatasetImageRef(String image, int datasetIndex, int imageRefIndex)` Set the ImageRef property of Dataset.
`void`	`setDatasetName(String name, int datasetIndex)` Set the Name property of Dataset.
`void`	`setDetectorAmplificationGain(Double amplificationGain, int instrumentIndex, int detectorIndex)` Set the AmplificationGain property of Detector.
`void`	`setDetectorAnnotationRef(String annotation, int instrumentIndex, int detectorIndex, int annotationRefIndex)` Set the AnnotationRef property of Detector.
`void`	`setDetectorGain(Double gain, int instrumentIndex, int detectorIndex)` Set the Gain property of Detector.
`void`	`setDetectorID(String id, int instrumentIndex, int detectorIndex)` Set the ID property of Detector.
`void`	`setDetectorLotNumber(String lotNumber, int instrumentIndex, int detectorIndex)` Set the LotNumber property of Detector.
`void`	`setDetectorManufacturer(String manufacturer, int instrumentIndex, int detectorIndex)` Set the Manufacturer property of Detector.
`void`	`setDetectorModel(String model, int instrumentIndex, int detectorIndex)` Set the Model property of Detector.
`void`	`setDetectorOffset(Double offset, int instrumentIndex, int detectorIndex)` Set the Offset property of Detector.
`void`	`setDetectorSerialNumber(String serialNumber, int instrumentIndex, int detectorIndex)` Set the SerialNumber property of Detector.
`void`	`setDetectorSettingsBinning(Binning binning, int imageIndex, int channelIndex)` Set the Binning property of DetectorSettings.
`void`	`setDetectorSettingsGain(Double gain, int imageIndex, int channelIndex)` Set the Gain property of DetectorSettings.
`void`	`setDetectorSettingsID(String id, int imageIndex, int channelIndex)` Set the ID property of DetectorSettings.
`void`	`setDetectorSettingsIntegration(PositiveInteger integration, int imageIndex, int channelIndex)` Set the Integration property of DetectorSettings.
`void`	`setDetectorSettingsOffset(Double offset, int imageIndex, int channelIndex)` Set the Offset property of DetectorSettings.
`void`	`setDetectorSettingsReadOutRate(Frequency readOutRate, int imageIndex, int channelIndex)` Set the ReadOutRate property of DetectorSettings.
`void`	`setDetectorSettingsVoltage(ElectricPotential voltage, int imageIndex, int channelIndex)` Set the Voltage property of DetectorSettings.
`void`	`setDetectorSettingsZoom(Double zoom, int imageIndex, int channelIndex)` Set the Zoom property of DetectorSettings.
`void`	`setDetectorType(DetectorType type, int instrumentIndex, int detectorIndex)` Set the Type property of Detector.
`void`	`setDetectorVoltage(ElectricPotential voltage, int instrumentIndex, int detectorIndex)` Set the Voltage property of Detector.
`void`	`setDetectorZoom(Double zoom, int instrumentIndex, int detectorIndex)` Set the Zoom property of Detector.
`void`	`setDichroicAnnotationRef(String annotation, int instrumentIndex, int dichroicIndex, int annotationRefIndex)` Set the AnnotationRef property of Dichroic.
`void`	`setDichroicID(String id, int instrumentIndex, int dichroicIndex)` Set the ID property of Dichroic.
`void`	`setDichroicLotNumber(String lotNumber, int instrumentIndex, int dichroicIndex)` Set the LotNumber property of Dichroic.
`void`	`setDichroicManufacturer(String manufacturer, int instrumentIndex, int dichroicIndex)` Set the Manufacturer property of Dichroic.
`void`	`setDichroicModel(String model, int instrumentIndex, int dichroicIndex)` Set the Model property of Dichroic.
`void`	`setDichroicSerialNumber(String serialNumber, int instrumentIndex, int dichroicIndex)` Set the SerialNumber property of Dichroic.
`void`	`setDoubleAnnotationAnnotationRef(String annotation, int doubleAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of DoubleAnnotation.
`void`	`setDoubleAnnotationAnnotator(String annotator, int doubleAnnotationIndex)` Set the Annotator property of DoubleAnnotation.
`void`	`setDoubleAnnotationDescription(String description, int doubleAnnotationIndex)` Set the Description property of DoubleAnnotation.
`void`	`setDoubleAnnotationID(String id, int doubleAnnotationIndex)` Set the ID property of DoubleAnnotation.
`void`	`setDoubleAnnotationNamespace(String namespace, int doubleAnnotationIndex)` Set the Namespace property of DoubleAnnotation.
`void`	`setDoubleAnnotationValue(Double value, int doubleAnnotationIndex)` Set the Value property of DoubleAnnotation.
`void`	`setEllipseAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Ellipse.
`void`	`setEllipseFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Ellipse.
`void`	`setEllipseFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Ellipse.
`void`	`setEllipseFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Ellipse.
`void`	`setEllipseFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Ellipse.
`void`	`setEllipseFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Ellipse.
`void`	`setEllipseID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Ellipse.
`void`	`setEllipseLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Ellipse.
`void`	`setEllipseLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Ellipse.
`void`	`setEllipseRadiusX(Double radiusX, int ROIIndex, int shapeIndex)` Set the RadiusX property of Ellipse.
`void`	`setEllipseRadiusY(Double radiusY, int ROIIndex, int shapeIndex)` Set the RadiusY property of Ellipse.
`void`	`setEllipseStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Ellipse.
`void`	`setEllipseStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Ellipse.
`void`	`setEllipseStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Ellipse.
`void`	`setEllipseText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Ellipse.
`void`	`setEllipseTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Ellipse.
`void`	`setEllipseTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Ellipse.
`void`	`setEllipseTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Ellipse.
`void`	`setEllipseTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Ellipse.
`void`	`setEllipseVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Ellipse.
`void`	`setEllipseX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Ellipse.
`void`	`setEllipseY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Ellipse.
`void`	`setExperimentDescription(String description, int experimentIndex)` Set the Description property of Experiment.
`void`	`setExperimenterAnnotationRef(String annotation, int experimenterIndex, int annotationRefIndex)` Set the AnnotationRef property of Experimenter.
`void`	`setExperimenterEmail(String email, int experimenterIndex)` Set the Email property of Experimenter.
`void`	`setExperimenterFirstName(String firstName, int experimenterIndex)` Set the FirstName property of Experimenter.
`void`	`setExperimenterGroupAnnotationRef(String annotation, int experimenterGroupIndex, int annotationRefIndex)` Set the AnnotationRef property of ExperimenterGroup.
`void`	`setExperimenterGroupDescription(String description, int experimenterGroupIndex)` Set the Description property of ExperimenterGroup.
`void`	`setExperimenterGroupExperimenterRef(String experimenter, int experimenterGroupIndex, int experimenterRefIndex)` Set the ExperimenterRef property of ExperimenterGroup.
`void`	`setExperimenterGroupID(String id, int experimenterGroupIndex)` Set the ID property of ExperimenterGroup.
`void`	`setExperimenterGroupLeader(String leader, int experimenterGroupIndex, int leaderIndex)` Set the Leader property of ExperimenterGroup.
`void`	`setExperimenterGroupName(String name, int experimenterGroupIndex)` Set the Name property of ExperimenterGroup.
`void`	`setExperimenterID(String id, int experimenterIndex)` Set the ID property of Experimenter.
`void`	`setExperimenterInstitution(String institution, int experimenterIndex)` Set the Institution property of Experimenter.
`void`	`setExperimenterLastName(String lastName, int experimenterIndex)` Set the LastName property of Experimenter.
`void`	`setExperimenterMiddleName(String middleName, int experimenterIndex)` Set the MiddleName property of Experimenter.
`void`	`setExperimenterUserName(String userName, int experimenterIndex)` Set the UserName property of Experimenter.
`void`	`setExperimentExperimenterRef(String experimenter, int experimentIndex)` Set the ExperimenterRef property of Experiment.
`void`	`setExperimentID(String id, int experimentIndex)` Set the ID property of Experiment.
`void`	`setExperimentType(ExperimentType type, int experimentIndex)` Set the Type property of Experiment.
`void`	`setFilamentAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of Filament.
`void`	`setFilamentID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of Filament.
`void`	`setFilamentLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of Filament.
`void`	`setFilamentManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of Filament.
`void`	`setFilamentModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of Filament.
`void`	`setFilamentPower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of Filament.
`void`	`setFilamentSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of Filament.
`void`	`setFilamentType(FilamentType type, int instrumentIndex, int lightSourceIndex)` Set the Type property of Filament.
`void`	`setFileAnnotationAnnotationRef(String annotation, int fileAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of FileAnnotation.
`void`	`setFileAnnotationAnnotator(String annotator, int fileAnnotationIndex)` Set the Annotator property of FileAnnotation.
`void`	`setFileAnnotationDescription(String description, int fileAnnotationIndex)` Set the Description property of FileAnnotation.
`void`	`setFileAnnotationID(String id, int fileAnnotationIndex)` Set the ID property of FileAnnotation.
`void`	`setFileAnnotationNamespace(String namespace, int fileAnnotationIndex)` Set the Namespace property of FileAnnotation.
`void`	`setFilterAnnotationRef(String annotation, int instrumentIndex, int filterIndex, int annotationRefIndex)` Set the AnnotationRef property of Filter.
`void`	`setFilterFilterWheel(String filterWheel, int instrumentIndex, int filterIndex)` Set the FilterWheel property of Filter.
`void`	`setFilterID(String id, int instrumentIndex, int filterIndex)` Set the ID property of Filter.
`void`	`setFilterLotNumber(String lotNumber, int instrumentIndex, int filterIndex)` Set the LotNumber property of Filter.
`void`	`setFilterManufacturer(String manufacturer, int instrumentIndex, int filterIndex)` Set the Manufacturer property of Filter.
`void`	`setFilterModel(String model, int instrumentIndex, int filterIndex)` Set the Model property of Filter.
`void`	`setFilterSerialNumber(String serialNumber, int instrumentIndex, int filterIndex)` Set the SerialNumber property of Filter.
`void`	`setFilterSetDichroicRef(String dichroic, int instrumentIndex, int filterSetIndex)` Set the DichroicRef property of FilterSet.
`void`	`setFilterSetEmissionFilterRef(String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)` Set the EmissionFilterRef property of FilterSet.
`void`	`setFilterSetExcitationFilterRef(String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)` Set the ExcitationFilterRef property of FilterSet.
`void`	`setFilterSetID(String id, int instrumentIndex, int filterSetIndex)` Set the ID property of FilterSet.
`void`	`setFilterSetLotNumber(String lotNumber, int instrumentIndex, int filterSetIndex)` Set the LotNumber property of FilterSet.
`void`	`setFilterSetManufacturer(String manufacturer, int instrumentIndex, int filterSetIndex)` Set the Manufacturer property of FilterSet.
`void`	`setFilterSetModel(String model, int instrumentIndex, int filterSetIndex)` Set the Model property of FilterSet.
`void`	`setFilterSetSerialNumber(String serialNumber, int instrumentIndex, int filterSetIndex)` Set the SerialNumber property of FilterSet.
`void`	`setFilterType(FilterType type, int instrumentIndex, int filterIndex)` Set the Type property of Filter.
`void`	`setGenericExcitationSourceAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of GenericExcitationSource.
`void`	`setGenericExcitationSourceID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of GenericExcitationSource.
`void`	`setGenericExcitationSourceLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of GenericExcitationSource.
`void`	`setGenericExcitationSourceManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of GenericExcitationSource.
`void`	`setGenericExcitationSourceMap(List<MapPair> map, int instrumentIndex, int lightSourceIndex)` Sets the Map value associated with this generic light source
`void`	`setGenericExcitationSourceModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of GenericExcitationSource.
`void`	`setGenericExcitationSourcePower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of GenericExcitationSource.
`void`	`setGenericExcitationSourceSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of GenericExcitationSource.
`void`	`setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex)` Set the AcquisitionDate property of Image.
`void`	`setImageAnnotationRef(String annotation, int imageIndex, int annotationRefIndex)` Set the AnnotationRef property of Image.
`void`	`setImageDescription(String description, int imageIndex)` Set the Description property of Image.
`void`	`setImageExperimenterGroupRef(String experimenterGroup, int imageIndex)` Set the ExperimenterGroupRef property of Image.
`void`	`setImageExperimenterRef(String experimenter, int imageIndex)` Set the ExperimenterRef property of Image.
`void`	`setImageExperimentRef(String experiment, int imageIndex)` Set the ExperimentRef property of Image.
`void`	`setImageID(String id, int imageIndex)` Set the ID property of Image.
`void`	`setImageInstrumentRef(String instrument, int imageIndex)` Set the InstrumentRef property of Image.
`void`	`setImageMicrobeamManipulationRef(String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)` Set the MicrobeamManipulationRef property of Image.
`void`	`setImageName(String name, int imageIndex)` Set the Name property of Image.
`void`	`setImageROIRef(String roi, int imageIndex, int ROIRefIndex)` Set the ROIRef property of Image.
`void`	`setImagingEnvironmentAirPressure(Pressure airPressure, int imageIndex)` Set the AirPressure property of ImagingEnvironment.
`void`	`setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex)` Set the CO2Percent property of ImagingEnvironment.
`void`	`setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex)` Set the Humidity property of ImagingEnvironment.
`void`	`setImagingEnvironmentMap(List<MapPair> map, int imageIndex)` Sets the Map value associated with this imaging environment
`void`	`setImagingEnvironmentTemperature(Temperature temperature, int imageIndex)` Set the Temperature property of ImagingEnvironment.
`void`	`setInstrumentAnnotationRef(String annotation, int instrumentIndex, int annotationRefIndex)` Set the AnnotationRef property of Instrument.
`void`	`setInstrumentID(String id, int instrumentIndex)` Set the ID property of Instrument.
`void`	`setLabelAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Label.
`void`	`setLabelFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Label.
`void`	`setLabelFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Label.
`void`	`setLabelFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Label.
`void`	`setLabelFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Label.
`void`	`setLabelFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Label.
`void`	`setLabelID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Label.
`void`	`setLabelLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Label.
`void`	`setLabelLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Label.
`void`	`setLabelStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Label.
`void`	`setLabelStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Label.
`void`	`setLabelStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Label.
`void`	`setLabelText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Label.
`void`	`setLabelTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Label.
`void`	`setLabelTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Label.
`void`	`setLabelTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Label.
`void`	`setLabelTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Label.
`void`	`setLabelVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Label.
`void`	`setLabelX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Label.
`void`	`setLabelY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Label.
`void`	`setLaserAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of Laser.
`void`	`setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)` Set the FrequencyMultiplication property of Laser.
`void`	`setLaserID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of Laser.
`void`	`setLaserLaserMedium(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)` Set the LaserMedium property of Laser.
`void`	`setLaserLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of Laser.
`void`	`setLaserManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of Laser.
`void`	`setLaserModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of Laser.
`void`	`setLaserPockelCell(Boolean pockelCell, int instrumentIndex, int lightSourceIndex)` Set the PockelCell property of Laser.
`void`	`setLaserPower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of Laser.
`void`	`setLaserPulse(Pulse pulse, int instrumentIndex, int lightSourceIndex)` Set the Pulse property of Laser.
`void`	`setLaserPump(String pump, int instrumentIndex, int lightSourceIndex)` Set the Pump property of Laser.
`void`	`setLaserRepetitionRate(Frequency repetitionRate, int instrumentIndex, int lightSourceIndex)` Set the RepetitionRate property of Laser.
`void`	`setLaserSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of Laser.
`void`	`setLaserTuneable(Boolean tuneable, int instrumentIndex, int lightSourceIndex)` Set the Tuneable property of Laser.
`void`	`setLaserType(LaserType type, int instrumentIndex, int lightSourceIndex)` Set the Type property of Laser.
`void`	`setLaserWavelength(Length wavelength, int instrumentIndex, int lightSourceIndex)` Set the Wavelength property of Laser.
`void`	`setLightEmittingDiodeAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of LightEmittingDiode.
`void`	`setLightEmittingDiodeID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of LightEmittingDiode.
`void`	`setLightEmittingDiodeLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of LightEmittingDiode.
`void`	`setLightEmittingDiodeManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of LightEmittingDiode.
`void`	`setLightEmittingDiodeModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of LightEmittingDiode.
`void`	`setLightEmittingDiodePower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of LightEmittingDiode.
`void`	`setLightEmittingDiodeSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of LightEmittingDiode.
`void`	`setLightPathAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)` Set the AnnotationRef property of LightPath.
`void`	`setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex)` Set the DichroicRef property of LightPath.
`void`	`setLightPathEmissionFilterRef(String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)` Set the EmissionFilterRef property of LightPath.
`void`	`setLightPathExcitationFilterRef(String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)` Set the ExcitationFilterRef property of LightPath.
`void`	`setLineAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Line.
`void`	`setLineFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Line.
`void`	`setLineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Line.
`void`	`setLineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Line.
`void`	`setLineFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Line.
`void`	`setLineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Line.
`void`	`setLineID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Line.
`void`	`setLineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Line.
`void`	`setLineLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Line.
`void`	`setLineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)` Set the MarkerEnd property of Line.
`void`	`setLineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)` Set the MarkerStart property of Line.
`void`	`setLineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Line.
`void`	`setLineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Line.
`void`	`setLineStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Line.
`void`	`setLineText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Line.
`void`	`setLineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Line.
`void`	`setLineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Line.
`void`	`setLineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Line.
`void`	`setLineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Line.
`void`	`setLineVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Line.
`void`	`setLineX1(Double x1, int ROIIndex, int shapeIndex)` Set the X1 property of Line.
`void`	`setLineX2(Double x2, int ROIIndex, int shapeIndex)` Set the X2 property of Line.
`void`	`setLineY1(Double y1, int ROIIndex, int shapeIndex)` Set the Y1 property of Line.
`void`	`setLineY2(Double y2, int ROIIndex, int shapeIndex)` Set the Y2 property of Line.
`void`	`setListAnnotationAnnotationRef(String annotation, int listAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of ListAnnotation.
`void`	`setListAnnotationAnnotator(String annotator, int listAnnotationIndex)` Set the Annotator property of ListAnnotation.
`void`	`setListAnnotationDescription(String description, int listAnnotationIndex)` Set the Description property of ListAnnotation.
`void`	`setListAnnotationID(String id, int listAnnotationIndex)` Set the ID property of ListAnnotation.
`void`	`setListAnnotationNamespace(String namespace, int listAnnotationIndex)` Set the Namespace property of ListAnnotation.
`void`	`setLongAnnotationAnnotationRef(String annotation, int longAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of LongAnnotation.
`void`	`setLongAnnotationAnnotator(String annotator, int longAnnotationIndex)` Set the Annotator property of LongAnnotation.
`void`	`setLongAnnotationDescription(String description, int longAnnotationIndex)` Set the Description property of LongAnnotation.
`void`	`setLongAnnotationID(String id, int longAnnotationIndex)` Set the ID property of LongAnnotation.
`void`	`setLongAnnotationNamespace(String namespace, int longAnnotationIndex)` Set the Namespace property of LongAnnotation.
`void`	`setLongAnnotationValue(Long value, int longAnnotationIndex)` Set the Value property of LongAnnotation.
`void`	`setMapAnnotationAnnotationRef(String annotation, int mapAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of MapAnnotation.
`void`	`setMapAnnotationAnnotator(String annotator, int mapAnnotationIndex)` Set the Annotator property of MapAnnotation.
`void`	`setMapAnnotationDescription(String description, int mapAnnotationIndex)` Set the Description property of MapAnnotation.
`void`	`setMapAnnotationID(String id, int mapAnnotationIndex)` Set the ID property of MapAnnotation.
`void`	`setMapAnnotationNamespace(String namespace, int mapAnnotationIndex)` Set the Namespace property of MapAnnotation.
`void`	`setMapAnnotationValue(List<MapPair> value, int mapAnnotationIndex)` Sets the Map value associated with this annotation
`void`	`setMaskAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Mask.
`void`	`setMaskBinData(byte[] binData, int ROIIndex, int shapeIndex)` Set the BinData property of Mask.
`void`	`setMaskFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Mask.
`void`	`setMaskFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Mask.
`void`	`setMaskFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Mask.
`void`	`setMaskFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Mask.
`void`	`setMaskFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Mask.
`void`	`setMaskHeight(Double height, int ROIIndex, int shapeIndex)` Set the Height property of Mask.
`void`	`setMaskID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Mask.
`void`	`setMaskLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Mask.
`void`	`setMaskLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Mask.
`void`	`setMaskStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Mask.
`void`	`setMaskStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Mask.
`void`	`setMaskStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Mask.
`void`	`setMaskText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Mask.
`void`	`setMaskTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Mask.
`void`	`setMaskTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Mask.
`void`	`setMaskTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Mask.
`void`	`setMaskTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Mask.
`void`	`setMaskVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Mask.
`void`	`setMaskWidth(Double width, int ROIIndex, int shapeIndex)` Set the Width property of Mask.
`void`	`setMaskX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Mask.
`void`	`setMaskY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Mask.
`void`	`setMicrobeamManipulationDescription(String description, int experimentIndex, int microbeamManipulationIndex)` Set the Description property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationExperimenterRef(String experimenter, int experimentIndex, int microbeamManipulationIndex)` Set the ExperimenterRef property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationID(String id, int experimentIndex, int microbeamManipulationIndex)` Set the ID property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Set the Attenuation property of LightSourceSettings.
`void`	`setMicrobeamManipulationLightSourceSettingsID(String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Set the ID property of LightSourceSettings.
`void`	`setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Set the Wavelength property of LightSourceSettings.
`void`	`setMicrobeamManipulationROIRef(String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)` Set the ROIRef property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)` Set the Type property of MicrobeamManipulation.
`void`	`setMicroscopeLotNumber(String lotNumber, int instrumentIndex)` Set the LotNumber property of Microscope.
`void`	`setMicroscopeManufacturer(String manufacturer, int instrumentIndex)` Set the Manufacturer property of Microscope.
`void`	`setMicroscopeModel(String model, int instrumentIndex)` Set the Model property of Microscope.
`void`	`setMicroscopeSerialNumber(String serialNumber, int instrumentIndex)` Set the SerialNumber property of Microscope.
`void`	`setMicroscopeType(MicroscopeType type, int instrumentIndex)` Set the Type property of Microscope.
`void`	`setObjectiveAnnotationRef(String annotation, int instrumentIndex, int objectiveIndex, int annotationRefIndex)` Set the AnnotationRef property of Objective.
`void`	`setObjectiveCalibratedMagnification(Double calibratedMagnification, int instrumentIndex, int objectiveIndex)` Set the CalibratedMagnification property of Objective.
`void`	`setObjectiveCorrection(Correction correction, int instrumentIndex, int objectiveIndex)` Set the Correction property of Objective.
`void`	`setObjectiveID(String id, int instrumentIndex, int objectiveIndex)` Set the ID property of Objective.
`void`	`setObjectiveImmersion(Immersion immersion, int instrumentIndex, int objectiveIndex)` Set the Immersion property of Objective.
`void`	`setObjectiveIris(Boolean iris, int instrumentIndex, int objectiveIndex)` Set the Iris property of Objective.
`void`	`setObjectiveLensNA(Double lensNA, int instrumentIndex, int objectiveIndex)` Set the LensNA property of Objective.
`void`	`setObjectiveLotNumber(String lotNumber, int instrumentIndex, int objectiveIndex)` Set the LotNumber property of Objective.
`void`	`setObjectiveManufacturer(String manufacturer, int instrumentIndex, int objectiveIndex)` Set the Manufacturer property of Objective.
`void`	`setObjectiveModel(String model, int instrumentIndex, int objectiveIndex)` Set the Model property of Objective.
`void`	`setObjectiveNominalMagnification(Double nominalMagnification, int instrumentIndex, int objectiveIndex)` Set the NominalMagnification property of Objective.
`void`	`setObjectiveSerialNumber(String serialNumber, int instrumentIndex, int objectiveIndex)` Set the SerialNumber property of Objective.
`void`	`setObjectiveSettingsCorrectionCollar(Double correctionCollar, int imageIndex)` Set the CorrectionCollar property of ObjectiveSettings.
`void`	`setObjectiveSettingsID(String id, int imageIndex)` Set the ID property of ObjectiveSettings.
`void`	`setObjectiveSettingsMedium(Medium medium, int imageIndex)` Set the Medium property of ObjectiveSettings.
`void`	`setObjectiveSettingsRefractiveIndex(Double refractiveIndex, int imageIndex)` Set the RefractiveIndex property of ObjectiveSettings.
`void`	`setObjectiveWorkingDistance(Length workingDistance, int instrumentIndex, int objectiveIndex)` Set the WorkingDistance property of Objective.
`void`	`setPixelsBigEndian(Boolean bigEndian, int imageIndex)` Set the BigEndian property of Pixels.
`void`	`setPixelsBinDataBigEndian(Boolean bigEndian, int imageIndex, int binDataIndex)` Set the BigEndian property of Pixels.
`void`	`setPixelsDimensionOrder(DimensionOrder dimensionOrder, int imageIndex)` Set the DimensionOrder property of Pixels.
`void`	`setPixelsID(String id, int imageIndex)` Set the ID property of Pixels.
`void`	`setPixelsInterleaved(Boolean interleaved, int imageIndex)` Set the Interleaved property of Pixels.
`void`	`setPixelsPhysicalSizeX(Length physicalSizeX, int imageIndex)` Set the PhysicalSizeX property of Pixels.
`void`	`setPixelsPhysicalSizeY(Length physicalSizeY, int imageIndex)` Set the PhysicalSizeY property of Pixels.
`void`	`setPixelsPhysicalSizeZ(Length physicalSizeZ, int imageIndex)` Set the PhysicalSizeZ property of Pixels.
`void`	`setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex)` Set the SignificantBits property of Pixels.
`void`	`setPixelsSizeC(PositiveInteger sizeC, int imageIndex)` Set the SizeC property of Pixels.
`void`	`setPixelsSizeT(PositiveInteger sizeT, int imageIndex)` Set the SizeT property of Pixels.
`void`	`setPixelsSizeX(PositiveInteger sizeX, int imageIndex)` Set the SizeX property of Pixels.
`void`	`setPixelsSizeY(PositiveInteger sizeY, int imageIndex)` Set the SizeY property of Pixels.
`void`	`setPixelsSizeZ(PositiveInteger sizeZ, int imageIndex)` Set the SizeZ property of Pixels.
`void`	`setPixelsTimeIncrement(Time timeIncrement, int imageIndex)` Set the TimeIncrement property of Pixels.
`void`	`setPixelsType(PixelType type, int imageIndex)` Set the Type property of Pixels.
`void`	`setPlaneAnnotationRef(String annotation, int imageIndex, int planeIndex, int annotationRefIndex)` Set the AnnotationRef property of Plane.
`void`	`setPlaneDeltaT(Time deltaT, int imageIndex, int planeIndex)` Set the DeltaT property of Plane.
`void`	`setPlaneExposureTime(Time exposureTime, int imageIndex, int planeIndex)` Set the ExposureTime property of Plane.
`void`	`setPlaneHashSHA1(String hashSHA1, int imageIndex, int planeIndex)` Set the HashSHA1 property of Plane.
`void`	`setPlanePositionX(Length positionX, int imageIndex, int planeIndex)` Set the PositionX property of Plane.
`void`	`setPlanePositionY(Length positionY, int imageIndex, int planeIndex)` Set the PositionY property of Plane.
`void`	`setPlanePositionZ(Length positionZ, int imageIndex, int planeIndex)` Set the PositionZ property of Plane.
`void`	`setPlaneTheC(NonNegativeInteger theC, int imageIndex, int planeIndex)` Set the TheC property of Plane.
`void`	`setPlaneTheT(NonNegativeInteger theT, int imageIndex, int planeIndex)` Set the TheT property of Plane.
`void`	`setPlaneTheZ(NonNegativeInteger theZ, int imageIndex, int planeIndex)` Set the TheZ property of Plane.
`void`	`setPlateAcquisitionAnnotationRef(String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)` Set the AnnotationRef property of PlateAcquisition.
`void`	`setPlateAcquisitionDescription(String description, int plateIndex, int plateAcquisitionIndex)` Set the Description property of PlateAcquisition.
`void`	`setPlateAcquisitionEndTime(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)` Set the EndTime property of PlateAcquisition.
`void`	`setPlateAcquisitionID(String id, int plateIndex, int plateAcquisitionIndex)` Set the ID property of PlateAcquisition.
`void`	`setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)` Set the MaximumFieldCount property of PlateAcquisition.
`void`	`setPlateAcquisitionName(String name, int plateIndex, int plateAcquisitionIndex)` Set the Name property of PlateAcquisition.
`void`	`setPlateAcquisitionStartTime(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)` Set the StartTime property of PlateAcquisition.
`void`	`setPlateAcquisitionWellSampleRef(String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)` Set the WellSampleRef property of PlateAcquisition.
`void`	`setPlateAnnotationRef(String annotation, int plateIndex, int annotationRefIndex)` Set the AnnotationRef property of Plate.
`void`	`setPlateColumnNamingConvention(NamingConvention columnNamingConvention, int plateIndex)` Set the ColumnNamingConvention property of Plate.
`void`	`setPlateColumns(PositiveInteger columns, int plateIndex)` Set the Columns property of Plate.
`void`	`setPlateDescription(String description, int plateIndex)` Set the Description property of Plate.
`void`	`setPlateExternalIdentifier(String externalIdentifier, int plateIndex)` Set the ExternalIdentifier property of Plate.
`void`	`setPlateFieldIndex(NonNegativeInteger fieldIndex, int plateIndex)` Set the FieldIndex property of Plate.
`void`	`setPlateID(String id, int plateIndex)` Set the ID property of Plate.
`void`	`setPlateName(String name, int plateIndex)` Set the Name property of Plate.
`void`	`setPlateRowNamingConvention(NamingConvention rowNamingConvention, int plateIndex)` Set the RowNamingConvention property of Plate.
`void`	`setPlateRows(PositiveInteger rows, int plateIndex)` Set the Rows property of Plate.
`void`	`setPlateStatus(String status, int plateIndex)` Set the Status property of Plate.
`void`	`setPlateWellOriginX(Length wellOriginX, int plateIndex)` Set the WellOriginX property of Plate.
`void`	`setPlateWellOriginY(Length wellOriginY, int plateIndex)` Set the WellOriginY property of Plate.
`void`	`setPointAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Point.
`void`	`setPointFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Point.
`void`	`setPointFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Point.
`void`	`setPointFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Point.
`void`	`setPointFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Point.
`void`	`setPointFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Point.
`void`	`setPointID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Point.
`void`	`setPointLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Point.
`void`	`setPointLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Point.
`void`	`setPointStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Point.
`void`	`setPointStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Point.
`void`	`setPointStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Point.
`void`	`setPointText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Point.
`void`	`setPointTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Point.
`void`	`setPointTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Point.
`void`	`setPointTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Point.
`void`	`setPointTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Point.
`void`	`setPointVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Point.
`void`	`setPointX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Point.
`void`	`setPointY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Point.
`void`	`setPolygonAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Polygon.
`void`	`setPolygonFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Polygon.
`void`	`setPolygonFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Polygon.
`void`	`setPolygonFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Polygon.
`void`	`setPolygonFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Polygon.
`void`	`setPolygonFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Polygon.
`void`	`setPolygonID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Polygon.
`void`	`setPolygonLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Polygon.
`void`	`setPolygonLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Polygon.
`void`	`setPolygonPoints(String points, int ROIIndex, int shapeIndex)` Set the Points property of Polygon.
`void`	`setPolygonStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Polygon.
`void`	`setPolygonStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Polygon.
`void`	`setPolygonStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Polygon.
`void`	`setPolygonText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Polygon.
`void`	`setPolygonTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Polygon.
`void`	`setPolygonTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Polygon.
`void`	`setPolygonTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Polygon.
`void`	`setPolygonTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Polygon.
`void`	`setPolygonVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Polygon.
`void`	`setPolylineAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Polyline.
`void`	`setPolylineFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Polyline.
`void`	`setPolylineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Polyline.
`void`	`setPolylineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Polyline.
`void`	`setPolylineFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Polyline.
`void`	`setPolylineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Polyline.
`void`	`setPolylineID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Polyline.
`void`	`setPolylineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Polyline.
`void`	`setPolylineLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Polyline.
`void`	`setPolylineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)` Set the MarkerEnd property of Polyline.
`void`	`setPolylineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)` Set the MarkerStart property of Polyline.
`void`	`setPolylinePoints(String points, int ROIIndex, int shapeIndex)` Set the Points property of Polyline.
`void`	`setPolylineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Polyline.
`void`	`setPolylineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Polyline.
`void`	`setPolylineStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Polyline.
`void`	`setPolylineText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Polyline.
`void`	`setPolylineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Polyline.
`void`	`setPolylineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Polyline.
`void`	`setPolylineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Polyline.
`void`	`setPolylineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Polyline.
`void`	`setPolylineVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Polyline.
`void`	`setProjectAnnotationRef(String annotation, int projectIndex, int annotationRefIndex)` Set the AnnotationRef property of Project.
`void`	`setProjectDatasetRef(String dataset, int projectIndex, int datasetRefIndex)` Set the DatasetRef property of Project.
`void`	`setProjectDescription(String description, int projectIndex)` Set the Description property of Project.
`void`	`setProjectExperimenterGroupRef(String experimenterGroup, int projectIndex)` Set the ExperimenterGroupRef property of Project.
`void`	`setProjectExperimenterRef(String experimenter, int projectIndex)` Set the ExperimenterRef property of Project.
`void`	`setProjectID(String id, int projectIndex)` Set the ID property of Project.
`void`	`setProjectName(String name, int projectIndex)` Set the Name property of Project.
`void`	`setReagentAnnotationRef(String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)` Set the AnnotationRef property of Reagent.
`void`	`setReagentDescription(String description, int screenIndex, int reagentIndex)` Set the Description property of Reagent.
`void`	`setReagentID(String id, int screenIndex, int reagentIndex)` Set the ID property of Reagent.
`void`	`setReagentName(String name, int screenIndex, int reagentIndex)` Set the Name property of Reagent.
`void`	`setReagentReagentIdentifier(String reagentIdentifier, int screenIndex, int reagentIndex)` Set the ReagentIdentifier property of Reagent.
`void`	`setRectangleAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Rectangle.
`void`	`setRectangleFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Rectangle.
`void`	`setRectangleFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Rectangle.
`void`	`setRectangleFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Rectangle.
`void`	`setRectangleFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Rectangle.
`void`	`setRectangleFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Rectangle.
`void`	`setRectangleHeight(Double height, int ROIIndex, int shapeIndex)` Set the Height property of Rectangle.
`void`	`setRectangleID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Rectangle.
`void`	`setRectangleLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Rectangle.
`void`	`setRectangleLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Rectangle.
`void`	`setRectangleStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Rectangle.
`void`	`setRectangleStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Rectangle.
`void`	`setRectangleStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Rectangle.
`void`	`setRectangleText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Rectangle.
`void`	`setRectangleTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Rectangle.
`void`	`setRectangleTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Rectangle.
`void`	`setRectangleTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Rectangle.
`void`	`setRectangleTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Rectangle.
`void`	`setRectangleVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Rectangle.
`void`	`setRectangleWidth(Double width, int ROIIndex, int shapeIndex)` Set the Width property of Rectangle.
`void`	`setRectangleX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Rectangle.
`void`	`setRectangleY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Rectangle.
`void`	`setRightsRightsHeld(String rightsHeld)` Set the RightsHeld property of Rights.
`void`	`setRightsRightsHolder(String rightsHolder)` Set the RightsHolder property of Rights.
`void`	`setROIAnnotationRef(String annotation, int ROIIndex, int annotationRefIndex)` Set the AnnotationRef property of ROI.
`void`	`setROIDescription(String description, int ROIIndex)` Set the Description property of ROI.
`void`	`setROIID(String id, int ROIIndex)` Set the ID property of ROI.
`void`	`setROIName(String name, int ROIIndex)` Set the Name property of ROI.
`void`	`setROINamespace(String namespace, int ROIIndex)` Set the Namespace property of ROI.
`void`	`setRoot(MetadataRoot root)` Set the root node of the metadata.
`void`	`setScreenAnnotationRef(String annotation, int screenIndex, int annotationRefIndex)` Set the AnnotationRef property of Screen.
`void`	`setScreenDescription(String description, int screenIndex)` Set the Description property of Screen.
`void`	`setScreenID(String id, int screenIndex)` Set the ID property of Screen.
`void`	`setScreenName(String name, int screenIndex)` Set the Name property of Screen.
`void`	`setScreenPlateRef(String plate, int screenIndex, int plateRefIndex)` Set the PlateRef property of Screen.
`void`	`setScreenProtocolDescription(String protocolDescription, int screenIndex)` Set the ProtocolDescription property of Screen.
`void`	`setScreenProtocolIdentifier(String protocolIdentifier, int screenIndex)` Set the ProtocolIdentifier property of Screen.
`void`	`setScreenReagentSetDescription(String reagentSetDescription, int screenIndex)` Set the ReagentSetDescription property of Screen.
`void`	`setScreenReagentSetIdentifier(String reagentSetIdentifier, int screenIndex)` Set the ReagentSetIdentifier property of Screen.
`void`	`setScreenType(String type, int screenIndex)` Set the Type property of Screen.
`void`	`setStageLabelName(String name, int imageIndex)` Set the Name property of StageLabel.
`void`	`setStageLabelX(Length x, int imageIndex)` Set the X property of StageLabel.
`void`	`setStageLabelY(Length y, int imageIndex)` Set the Y property of StageLabel.
`void`	`setStageLabelZ(Length z, int imageIndex)` Set the Z property of StageLabel.
`void`	`setTagAnnotationAnnotationRef(String annotation, int tagAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of TagAnnotation.
`void`	`setTagAnnotationAnnotator(String annotator, int tagAnnotationIndex)` Set the Annotator property of TagAnnotation.
`void`	`setTagAnnotationDescription(String description, int tagAnnotationIndex)` Set the Description property of TagAnnotation.
`void`	`setTagAnnotationID(String id, int tagAnnotationIndex)` Set the ID property of TagAnnotation.
`void`	`setTagAnnotationNamespace(String namespace, int tagAnnotationIndex)` Set the Namespace property of TagAnnotation.
`void`	`setTagAnnotationValue(String value, int tagAnnotationIndex)` Set the Value property of TagAnnotation.
`void`	`setTermAnnotationAnnotationRef(String annotation, int termAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of TermAnnotation.
`void`	`setTermAnnotationAnnotator(String annotator, int termAnnotationIndex)` Set the Annotator property of TermAnnotation.
`void`	`setTermAnnotationDescription(String description, int termAnnotationIndex)` Set the Description property of TermAnnotation.
`void`	`setTermAnnotationID(String id, int termAnnotationIndex)` Set the ID property of TermAnnotation.
`void`	`setTermAnnotationNamespace(String namespace, int termAnnotationIndex)` Set the Namespace property of TermAnnotation.
`void`	`setTermAnnotationValue(String value, int termAnnotationIndex)` Set the Value property of TermAnnotation.
`void`	`setTiffDataFirstC(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)` Set the FirstC property of TiffData.
`void`	`setTiffDataFirstT(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)` Set the FirstT property of TiffData.
`void`	`setTiffDataFirstZ(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)` Set the FirstZ property of TiffData.
`void`	`setTiffDataIFD(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)` Set the IFD property of TiffData.
`void`	`setTiffDataPlaneCount(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)` Set the PlaneCount property of TiffData.
`void`	`setTimestampAnnotationAnnotationRef(String annotation, int timestampAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of TimestampAnnotation.
`void`	`setTimestampAnnotationAnnotator(String annotator, int timestampAnnotationIndex)` Set the Annotator property of TimestampAnnotation.
`void`	`setTimestampAnnotationDescription(String description, int timestampAnnotationIndex)` Set the Description property of TimestampAnnotation.
`void`	`setTimestampAnnotationID(String id, int timestampAnnotationIndex)` Set the ID property of TimestampAnnotation.
`void`	`setTimestampAnnotationNamespace(String namespace, int timestampAnnotationIndex)` Set the Namespace property of TimestampAnnotation.
`void`	`setTimestampAnnotationValue(Timestamp value, int timestampAnnotationIndex)` Set the Value property of TimestampAnnotation.
`void`	`setTransmittanceRangeCutIn(Length cutIn, int instrumentIndex, int filterIndex)` Set the CutIn property of TransmittanceRange.
`void`	`setTransmittanceRangeCutInTolerance(Length cutInTolerance, int instrumentIndex, int filterIndex)` Set the CutInTolerance property of TransmittanceRange.
`void`	`setTransmittanceRangeCutOut(Length cutOut, int instrumentIndex, int filterIndex)` Set the CutOut property of TransmittanceRange.
`void`	`setTransmittanceRangeCutOutTolerance(Length cutOutTolerance, int instrumentIndex, int filterIndex)` Set the CutOutTolerance property of TransmittanceRange.
`void`	`setTransmittanceRangeTransmittance(PercentFraction transmittance, int instrumentIndex, int filterIndex)` Set the Transmittance property of TransmittanceRange.
`void`	`setUUID(String uuid)` Sets the UUID associated with this collection of metadata.
`void`	`setUUIDFileName(String fileName, int imageIndex, int tiffDataIndex)` Set the FileName property of UUID.
`void`	`setUUIDValue(String value, int imageIndex, int tiffDataIndex)` Set the text value of UUID.
`void`	`setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex)` Set the AnnotationRef property of Well.
`void`	`setWellColor(Color color, int plateIndex, int wellIndex)` Set the Color property of Well.
`void`	`setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex)` Set the Column property of Well.
`void`	`setWellExternalDescription(String externalDescription, int plateIndex, int wellIndex)` Set the ExternalDescription property of Well.
`void`	`setWellExternalIdentifier(String externalIdentifier, int plateIndex, int wellIndex)` Set the ExternalIdentifier property of Well.
`void`	`setWellID(String id, int plateIndex, int wellIndex)` Set the ID property of Well.
`void`	`setWellReagentRef(String reagent, int plateIndex, int wellIndex)` Set the ReagentRef property of Well.
`void`	`setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex)` Set the Row property of Well.
`void`	`setWellSampleID(String id, int plateIndex, int wellIndex, int wellSampleIndex)` Set the ID property of WellSample.
`void`	`setWellSampleImageRef(String image, int plateIndex, int wellIndex, int wellSampleIndex)` Set the ImageRef property of WellSample.
`void`	`setWellSampleIndex(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)` Set the Index property of WellSample.
`void`	`setWellSamplePositionX(Length positionX, int plateIndex, int wellIndex, int wellSampleIndex)` Set the PositionX property of WellSample.
`void`	`setWellSamplePositionY(Length positionY, int plateIndex, int wellIndex, int wellSampleIndex)` Set the PositionY property of WellSample.
`void`	`setWellSampleTimepoint(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)` Set the Timepoint property of WellSample.
`void`	`setWellType(String type, int plateIndex, int wellIndex)` Set the Type property of Well.
`void`	`setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of XMLAnnotation.
`void`	`setXMLAnnotationAnnotator(String annotator, int XMLAnnotationIndex)` Set the Annotator property of XMLAnnotation.
`void`	`setXMLAnnotationDescription(String description, int XMLAnnotationIndex)` Set the Description property of XMLAnnotation.
`void`	`setXMLAnnotationID(String id, int XMLAnnotationIndex)` Set the ID property of XMLAnnotation.
`void`	`setXMLAnnotationNamespace(String namespace, int XMLAnnotationIndex)` Set the Namespace property of XMLAnnotation.
`void`	`setXMLAnnotationValue(String value, int XMLAnnotationIndex)` Set the Value property of XMLAnnotation.

Methods inherited from class ome.xml.meta.AbstractOMEXMLMetadata
createNewDocument

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - root
```
private OMEXMLMetadataRoot root
```
  - model
```
private OMEModel model
```
- Constructor Detail
  - OMEXMLMetadataImpl
```
public OMEXMLMetadataImpl()
```
- Method Detail
  - createRoot
```
public void createRoot()
```
    Description copied from interface: MetadataStore
    
    Create root node. The action taken here is specific to the concrete metadata implementation.
  - getRoot
```
public MetadataRoot getRoot()
```
    Description copied from interface: MetadataStore
    
    Get the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation.
    
    Returns:
    the root node.
  - setRoot
```
public void setRoot(MetadataRoot root)
```
    Description copied from interface: MetadataStore
    
    Set the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation. An exception will be thrown if the root node is of an incompatible type.
    
    Parameters:
    root - the root node.
  - dumpXML
```
public String dumpXML()
```
    Description copied from class: AbstractOMEXMLMetadata
    
    Dumps the given OME-XML DOM tree to a string.
    
    Specified by:
    
    dumpXML in interface OMEXMLMetadata
    
    Overrides:
    
    dumpXML in class AbstractOMEXMLMetadata
    
    Returns:
    OME-XML as a string.
  - resolveReferences
```
public int resolveReferences()
```
    Description copied from interface: OMEXMLMetadata
    
    Resolve model object cross-references.
  - getPixelsBinDataCount
```
public int getPixelsBinDataCount(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of BinData elements in Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the number of BinData elements.
  - getBooleanAnnotationAnnotationCount
```
public int getBooleanAnnotationAnnotationCount(int booleanAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a BooleanAnnotation. This method returns the number of references to the specified BooleanAnnotation held by all model objects.
    
    Parameters:
    booleanAnnotationIndex - the BooleanAnnotation index.
    
    Returns:
    the number of BooleanAnnotation links.
  - getCommentAnnotationAnnotationCount
```
public int getCommentAnnotationAnnotationCount(int commentAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a CommentAnnotation. This method returns the number of references to the specified CommentAnnotation held by all model objects.
    
    Parameters:
    commentAnnotationIndex - the CommentAnnotation index.
    
    Returns:
    the number of CommentAnnotation links.
  - getDoubleAnnotationAnnotationCount
```
public int getDoubleAnnotationAnnotationCount(int doubleAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a DoubleAnnotation. This method returns the number of references to the specified DoubleAnnotation held by all model objects.
    
    Parameters:
    doubleAnnotationIndex - the DoubleAnnotation index.
    
    Returns:
    the number of DoubleAnnotation links.
  - getFileAnnotationAnnotationCount
```
public int getFileAnnotationAnnotationCount(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a FileAnnotation. This method returns the number of references to the specified FileAnnotation held by all model objects.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the number of FileAnnotation links.
  - getListAnnotationAnnotationCount
```
public int getListAnnotationAnnotationCount(int listAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a ListAnnotation. This method returns the number of references to the specified ListAnnotation held by all model objects.
    
    Parameters:
    listAnnotationIndex - the ListAnnotation index.
    
    Returns:
    the number of ListAnnotation links.
  - getLongAnnotationAnnotationCount
```
public int getLongAnnotationAnnotationCount(int longAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a LongAnnotation. This method returns the number of references to the specified LongAnnotation held by all model objects.
    
    Parameters:
    longAnnotationIndex - the LongAnnotation index.
    
    Returns:
    the number of LongAnnotation links.
  - getMapAnnotationAnnotationCount
```
public int getMapAnnotationAnnotationCount(int mapAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a MapAnnotation. This method returns the number of references to the specified MapAnnotation held by all model objects.
    
    Parameters:
    mapAnnotationIndex - the MapAnnotation index.
    
    Returns:
    the number of MapAnnotation links.
  - getTagAnnotationAnnotationCount
```
public int getTagAnnotationAnnotationCount(int tagAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a TagAnnotation. This method returns the number of references to the specified TagAnnotation held by all model objects.
    
    Parameters:
    tagAnnotationIndex - the TagAnnotation index.
    
    Returns:
    the number of TagAnnotation links.
  - getTermAnnotationAnnotationCount
```
public int getTermAnnotationAnnotationCount(int termAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a TermAnnotation. This method returns the number of references to the specified TermAnnotation held by all model objects.
    
    Parameters:
    termAnnotationIndex - the TermAnnotation index.
    
    Returns:
    the number of TermAnnotation links.
  - getTimestampAnnotationAnnotationCount
```
public int getTimestampAnnotationAnnotationCount(int timestampAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to a TimestampAnnotation. This method returns the number of references to the specified TimestampAnnotation held by all model objects.
    
    Parameters:
    timestampAnnotationIndex - the TimestampAnnotation index.
    
    Returns:
    the number of TimestampAnnotation links.
  - getXMLAnnotationAnnotationCount
```
public int getXMLAnnotationAnnotationCount(int xmlAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of links to an XMLAnnotation. This method returns the number of references to the specified XMLAnnotation held by all model objects.
    
    Parameters:
    xmlAnnotationIndex - the XMLAnnotation index.
    
    Returns:
    the number of XMLAnnotation links.
  - getLightSourceType
```
public String getLightSourceType(int instrumentIndex,
                        int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the type of a LightSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the LightSource type.
  - getShapeType
```
public String getShapeType(int roiIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the type of a Shape.
    
    Parameters:
    roiIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Shape type.
  - getLightSourceAnnotationRefCount
```
public int getLightSourceAnnotationRefCount(int instrumentIndex,
                                   int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in LightSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the number of AnnotationRef elements.
  - getInstrumentAnnotationRefCount
```
public int getInstrumentAnnotationRefCount(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Instrument.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the number of AnnotationRef elements.
  - getObjectiveAnnotationRefCount
```
public int getObjectiveAnnotationRefCount(int instrumentIndex,
                                 int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the number of AnnotationRef elements.
  - getDetectorAnnotationRefCount
```
public int getDetectorAnnotationRefCount(int instrumentIndex,
                                int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the number of AnnotationRef elements.
  - getChannelAnnotationRefCount
```
public int getChannelAnnotationRefCount(int imageIndex,
                               int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the number of AnnotationRef elements.
  - getPlateAnnotationRefCount
```
public int getPlateAnnotationRefCount(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the number of AnnotationRef elements.
  - getExperimenterGroupAnnotationRefCount
```
public int getExperimenterGroupAnnotationRefCount(int experimenterGroupIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    
    Returns:
    the number of AnnotationRef elements.
  - getScreenAnnotationRefCount
```
public int getScreenAnnotationRefCount(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the number of AnnotationRef elements.
  - getReagentAnnotationRefCount
```
public int getReagentAnnotationRefCount(int screenIndex,
                               int reagentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Reagent.
    
    Parameters:
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    
    Returns:
    the number of AnnotationRef elements.
  - getPlaneAnnotationRefCount
```
public int getPlaneAnnotationRefCount(int imageIndex,
                             int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the number of AnnotationRef elements.
  - getExperimenterAnnotationRefCount
```
public int getExperimenterAnnotationRefCount(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the number of AnnotationRef elements.
  - getDichroicAnnotationRefCount
```
public int getDichroicAnnotationRefCount(int instrumentIndex,
                                int dichroicIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Dichroic.
    
    Parameters:
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    
    Returns:
    the number of AnnotationRef elements.
  - getWellAnnotationRefCount
```
public int getWellAnnotationRefCount(int plateIndex,
                            int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the number of AnnotationRef elements.
  - getFilterAnnotationRefCount
```
public int getFilterAnnotationRefCount(int instrumentIndex,
                              int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the number of AnnotationRef elements.
  - getPlateAcquisitionAnnotationRefCount
```
public int getPlateAcquisitionAnnotationRefCount(int plateIndex,
                                        int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the number of AnnotationRef elements.
  - getROIAnnotationRefCount
```
public int getROIAnnotationRefCount(int ROIIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in ROI.
    
    Parameters:
    ROIIndex - the ROI index.
    
    Returns:
    the number of AnnotationRef elements.
  - getProjectAnnotationRefCount
```
public int getProjectAnnotationRefCount(int projectIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Project.
    
    Parameters:
    projectIndex - the Project index.
    
    Returns:
    the number of AnnotationRef elements.
  - getLightPathAnnotationRefCount
```
public int getLightPathAnnotationRefCount(int imageIndex,
                                 int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in LightPath.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the number of AnnotationRef elements.
  - getImageAnnotationRefCount
```
public int getImageAnnotationRefCount(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the number of AnnotationRef elements.
  - getDatasetAnnotationRefCount
```
public int getDatasetAnnotationRefCount(int datasetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    
    Returns:
    the number of AnnotationRef elements.
  - getShapeAnnotationRefCount
```
public int getShapeAnnotationRefCount(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of AnnotationRef elements in Shape.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the number of AnnotationRef elements.
  - getBooleanAnnotationCount
```
public int getBooleanAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of BooleanAnnotation elements.
    
    Returns:
    the number of BooleanAnnotation elements.
  - getChannelCount
```
public int getChannelCount(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Channel elements.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the number of Channel elements.
  - getCommentAnnotationCount
```
public int getCommentAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of CommentAnnotation elements.
    
    Returns:
    the number of CommentAnnotation elements.
  - getDatasetCount
```
public int getDatasetCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Dataset elements.
    
    Returns:
    the number of Dataset elements.
  - getDatasetRefCount
```
public int getDatasetRefCount(int projectIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of DatasetRef elements.
    
    Parameters:
    projectIndex - the Project index.
    
    Returns:
    the number of DatasetRef elements.
  - getDetectorCount
```
public int getDetectorCount(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Detector elements.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the number of Detector elements.
  - getDichroicCount
```
public int getDichroicCount(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Dichroic elements.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the number of Dichroic elements.
  - getDoubleAnnotationCount
```
public int getDoubleAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of DoubleAnnotation elements.
    
    Returns:
    the number of DoubleAnnotation elements.
  - getLightPathEmissionFilterRefCount
```
public int getLightPathEmissionFilterRefCount(int imageIndex,
                                     int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of EmissionFilterRef elements in LightPath.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the number of EmissionFilterRef elements.
  - getFilterSetEmissionFilterRefCount
```
public int getFilterSetEmissionFilterRefCount(int instrumentIndex,
                                     int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of EmissionFilterRef elements in FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the number of EmissionFilterRef elements.
  - getLightPathExcitationFilterRefCount
```
public int getLightPathExcitationFilterRefCount(int imageIndex,
                                       int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ExcitationFilterRef elements in LightPath.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the number of ExcitationFilterRef elements.
  - getFilterSetExcitationFilterRefCount
```
public int getFilterSetExcitationFilterRefCount(int instrumentIndex,
                                       int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ExcitationFilterRef elements in FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the number of ExcitationFilterRef elements.
  - getExperimentCount
```
public int getExperimentCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Experiment elements.
    
    Returns:
    the number of Experiment elements.
  - getExperimenterCount
```
public int getExperimenterCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Experimenter elements.
    
    Returns:
    the number of Experimenter elements.
  - getExperimenterGroupCount
```
public int getExperimenterGroupCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ExperimenterGroup elements.
    
    Returns:
    the number of ExperimenterGroup elements.
  - getExperimenterGroupExperimenterRefCount
```
public int getExperimenterGroupExperimenterRefCount(int experimenterGroupIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ExperimenterRef elements in ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    
    Returns:
    the number of ExperimenterRef elements.
  - getFileAnnotationCount
```
public int getFileAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of FileAnnotation elements.
    
    Returns:
    the number of FileAnnotation elements.
  - getFilterCount
```
public int getFilterCount(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Filter elements.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the number of Filter elements.
  - getFilterSetCount
```
public int getFilterSetCount(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of FilterSet elements.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the number of FilterSet elements.
  - getImageCount
```
public int getImageCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Image elements.
    
    Returns:
    the number of Image elements.
  - getDatasetImageRefCount
```
public int getDatasetImageRefCount(int datasetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ImageRef elements in Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    
    Returns:
    the number of ImageRef elements.
  - getInstrumentCount
```
public int getInstrumentCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Instrument elements.
    
    Returns:
    the number of Instrument elements.
  - getLeaderCount
```
public int getLeaderCount(int experimenterGroupIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Leader elements.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    
    Returns:
    the number of Leader elements.
  - getLightSourceCount
```
public int getLightSourceCount(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of LightSource elements.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the number of LightSource elements.
  - getMicrobeamManipulationLightSourceSettingsCount
```
public int getMicrobeamManipulationLightSourceSettingsCount(int experimentIndex,
                                                   int microbeamManipulationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of LightSourceSettings elements in MicrobeamManipulation.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    
    Returns:
    the number of LightSourceSettings elements.
  - getListAnnotationCount
```
public int getListAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ListAnnotation elements.
    
    Returns:
    the number of ListAnnotation elements.
  - getLongAnnotationCount
```
public int getLongAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of LongAnnotation elements.
    
    Returns:
    the number of LongAnnotation elements.
  - getMapAnnotationCount
```
public int getMapAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of MapAnnotation elements.
    
    Returns:
    the number of MapAnnotation elements.
  - getMicrobeamManipulationCount
```
public int getMicrobeamManipulationCount(int experimentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of MicrobeamManipulation elements.
    
    Parameters:
    experimentIndex - the Experiment index.
    
    Returns:
    the number of MicrobeamManipulation elements.
  - getMicrobeamManipulationRefCount
```
public int getMicrobeamManipulationRefCount(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of MicrobeamManipulationRef elements.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the number of MicrobeamManipulationRef elements.
  - getObjectiveCount
```
public int getObjectiveCount(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Objective elements.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the number of Objective elements.
  - getPlaneCount
```
public int getPlaneCount(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Plane elements.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the number of Plane elements.
  - getPlateCount
```
public int getPlateCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Plate elements.
    
    Returns:
    the number of Plate elements.
  - getPlateAcquisitionCount
```
public int getPlateAcquisitionCount(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of PlateAcquisition elements.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the number of PlateAcquisition elements.
  - getPlateRefCount
```
public int getPlateRefCount(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of PlateRef elements.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the number of PlateRef elements.
  - getProjectCount
```
public int getProjectCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Project elements.
    
    Returns:
    the number of Project elements.
  - getROICount
```
public int getROICount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ROI elements.
    
    Returns:
    the number of ROI elements.
  - getImageROIRefCount
```
public int getImageROIRefCount(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ROIRef elements in Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the number of ROIRef elements.
  - getMicrobeamManipulationROIRefCount
```
public int getMicrobeamManipulationROIRefCount(int experimentIndex,
                                      int microbeamManipulationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of ROIRef elements in MicrobeamManipulation.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    
    Returns:
    the number of ROIRef elements.
  - getReagentCount
```
public int getReagentCount(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Reagent elements.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the number of Reagent elements.
  - getScreenCount
```
public int getScreenCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Screen elements.
    
    Returns:
    the number of Screen elements.
  - getShapeCount
```
public int getShapeCount(int ROIIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Shape elements.
    
    Parameters:
    ROIIndex - the ROI index.
    
    Returns:
    the number of Shape elements.
  - getTagAnnotationCount
```
public int getTagAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of TagAnnotation elements.
    
    Returns:
    the number of TagAnnotation elements.
  - getTermAnnotationCount
```
public int getTermAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of TermAnnotation elements.
    
    Returns:
    the number of TermAnnotation elements.
  - getTiffDataCount
```
public int getTiffDataCount(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of TiffData elements.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the number of TiffData elements.
  - getTimestampAnnotationCount
```
public int getTimestampAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of TimestampAnnotation elements.
    
    Returns:
    the number of TimestampAnnotation elements.
  - setUUIDValue
```
public void setUUIDValue(String value,
                int imageIndex,
                int tiffDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the text value of UUID.
    
    Parameters:
    value - text value.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - getUUIDValue
```
public String getUUIDValue(int imageIndex,
                  int tiffDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the text value of UUID.
    
    Parameters:
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
    
    Returns:
    the text value.
  - getWellCount
```
public int getWellCount(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of Well elements.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the number of Well elements.
  - getWellSampleCount
```
public int getWellSampleCount(int plateIndex,
                     int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of WellSample elements.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the number of WellSample elements.
  - getWellSampleRefCount
```
public int getWellSampleRefCount(int plateIndex,
                        int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of WellSampleRef elements.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the number of WellSampleRef elements.
  - getXMLAnnotationCount
```
public int getXMLAnnotationCount()
```
    Description copied from interface: MetadataRetrieve
    
    Get the number of XMLAnnotation elements.
    
    Returns:
    the number of XMLAnnotation elements.
  - getPixelsBinDataBigEndian
```
public Boolean getPixelsBinDataBigEndian(int imageIndex,
                                int binDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the BigEndian property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    binDataIndex - BinData index (unused).
    
    Returns:
    true if big endian, or false if little endian.
  - getUUID
```
public String getUUID()
```
    Gets the UUID associated with this collection of metadata.
  - getMapAnnotationValue
```
public List<MapPair> getMapAnnotationValue(int mapAnnotationIndex)
```
    Gets the Map value associated with this annotation
    
    Parameters:
    mapAnnotationIndex - the MapAnnotation index.
    
    Returns:
    the MapAnnotation values.
  - getGenericExcitationSourceMap
```
public List<MapPair> getGenericExcitationSourceMap(int instrumentIndex,
                                          int lightSourceIndex)
```
    Gets the Map value associated with this generic light source
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the MapAnnotation values.
  - getImagingEnvironmentMap
```
public List<MapPair> getImagingEnvironmentMap(int imageIndex)
```
    Gets the Map value associated with this imaging environment
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the MapAnnotation values.
  - getArcAnnotationRef
```
public String getArcAnnotationRef(int instrumentIndex,
                         int lightSourceIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getArcID
```
public String getArcID(int instrumentIndex,
              int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the ID property.
  - getArcLotNumber
```
public String getArcLotNumber(int instrumentIndex,
                     int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the LotNumber property.
  - getArcManufacturer
```
public String getArcManufacturer(int instrumentIndex,
                        int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Manufacturer property.
  - getArcModel
```
public String getArcModel(int instrumentIndex,
                 int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Model property.
  - getArcPower
```
public Power getArcPower(int instrumentIndex,
                int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Power property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Power property.
  - getArcSerialNumber
```
public String getArcSerialNumber(int instrumentIndex,
                        int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the SerialNumber property.
  - getArcType
```
public ArcType getArcType(int instrumentIndex,
                 int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Arc.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Type property.
  - getBinaryFileFileName
```
public String getBinaryFileFileName(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FileName property of BinaryFile.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the FileName property.
  - getBinaryFileMIMEType
```
public String getBinaryFileMIMEType(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MIMEType property of BinaryFile.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the MIMEType property.
  - getBinaryFileSize
```
public NonNegativeLong getBinaryFileSize(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Size property of BinaryFile.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the Size property.
  - getBinaryOnlyMetadataFile
```
public String getBinaryOnlyMetadataFile()
```
    Description copied from interface: MetadataRetrieve
    
    Get the MetadataFile property of BinaryOnly.
    
    Returns:
    the MetadataFile property.
  - getBinaryOnlyUUID
```
public String getBinaryOnlyUUID()
```
    Description copied from interface: MetadataRetrieve
    
    Get the UUID property of BinaryOnly.
    
    Returns:
    the UUID property.
  - getBooleanAnnotationAnnotationRef
```
public String getBooleanAnnotationAnnotationRef(int booleanAnnotationIndex,
                                       int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of BooleanAnnotation.
    
    Parameters:
    booleanAnnotationIndex - the BooleanAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getBooleanAnnotationAnnotator
```
public String getBooleanAnnotationAnnotator(int booleanAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of BooleanAnnotation.
    
    Parameters:
    booleanAnnotationIndex - the BooleanAnnotation index.
    
    Returns:
    the Annotator property.
  - getBooleanAnnotationDescription
```
public String getBooleanAnnotationDescription(int booleanAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of BooleanAnnotation.
    
    Parameters:
    booleanAnnotationIndex - the BooleanAnnotation index.
    
    Returns:
    the Description property.
  - getBooleanAnnotationID
```
public String getBooleanAnnotationID(int booleanAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of BooleanAnnotation.
    
    Parameters:
    booleanAnnotationIndex - the BooleanAnnotation index.
    
    Returns:
    the ID property.
  - getBooleanAnnotationNamespace
```
public String getBooleanAnnotationNamespace(int booleanAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of BooleanAnnotation.
    
    Parameters:
    booleanAnnotationIndex - the BooleanAnnotation index.
    
    Returns:
    the Namespace property.
  - getBooleanAnnotationValue
```
public Boolean getBooleanAnnotationValue(int booleanAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of BooleanAnnotation.
    
    Parameters:
    booleanAnnotationIndex - the BooleanAnnotation index.
    
    Returns:
    the Value property.
  - getChannelAcquisitionMode
```
public AcquisitionMode getChannelAcquisitionMode(int imageIndex,
                                        int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AcquisitionMode property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the AcquisitionMode property.
  - getChannelAnnotationRef
```
public String getChannelAnnotationRef(int imageIndex,
                             int channelIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getChannelColor
```
public Color getChannelColor(int imageIndex,
                    int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Color property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Color property.
  - getChannelContrastMethod
```
public ContrastMethod getChannelContrastMethod(int imageIndex,
                                      int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ContrastMethod property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the ContrastMethod property.
  - getChannelEmissionWavelength
```
public Length getChannelEmissionWavelength(int imageIndex,
                                  int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the EmissionWavelength property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the EmissionWavelength property.
  - getChannelExcitationWavelength
```
public Length getChannelExcitationWavelength(int imageIndex,
                                    int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExcitationWavelength property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the ExcitationWavelength property.
  - getChannelFilterSetRef
```
public String getChannelFilterSetRef(int imageIndex,
                            int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FilterSetRef property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the FilterSetRef property.
  - getChannelFluor
```
public String getChannelFluor(int imageIndex,
                     int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Fluor property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Fluor property.
  - getChannelID
```
public String getChannelID(int imageIndex,
                  int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the ID property.
  - getChannelIlluminationType
```
public IlluminationType getChannelIlluminationType(int imageIndex,
                                          int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the IlluminationType property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the IlluminationType property.
  - getChannelNDFilter
```
public Double getChannelNDFilter(int imageIndex,
                        int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the NDFilter property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the NDFilter property.
  - getChannelName
```
public String getChannelName(int imageIndex,
                    int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Name property.
  - getChannelPinholeSize
```
public Length getChannelPinholeSize(int imageIndex,
                           int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PinholeSize property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the PinholeSize property.
  - getChannelPockelCellSetting
```
public Integer getChannelPockelCellSetting(int imageIndex,
                                  int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PockelCellSetting property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the PockelCellSetting property.
  - getChannelSamplesPerPixel
```
public PositiveInteger getChannelSamplesPerPixel(int imageIndex,
                                        int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SamplesPerPixel property of Channel.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the SamplesPerPixel property.
  - getCommentAnnotationAnnotationRef
```
public String getCommentAnnotationAnnotationRef(int commentAnnotationIndex,
                                       int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of CommentAnnotation.
    
    Parameters:
    commentAnnotationIndex - the CommentAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getCommentAnnotationAnnotator
```
public String getCommentAnnotationAnnotator(int commentAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of CommentAnnotation.
    
    Parameters:
    commentAnnotationIndex - the CommentAnnotation index.
    
    Returns:
    the Annotator property.
  - getCommentAnnotationDescription
```
public String getCommentAnnotationDescription(int commentAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of CommentAnnotation.
    
    Parameters:
    commentAnnotationIndex - the CommentAnnotation index.
    
    Returns:
    the Description property.
  - getCommentAnnotationID
```
public String getCommentAnnotationID(int commentAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of CommentAnnotation.
    
    Parameters:
    commentAnnotationIndex - the CommentAnnotation index.
    
    Returns:
    the ID property.
  - getCommentAnnotationNamespace
```
public String getCommentAnnotationNamespace(int commentAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of CommentAnnotation.
    
    Parameters:
    commentAnnotationIndex - the CommentAnnotation index.
    
    Returns:
    the Namespace property.
  - getCommentAnnotationValue
```
public String getCommentAnnotationValue(int commentAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of CommentAnnotation.
    
    Parameters:
    commentAnnotationIndex - the CommentAnnotation index.
    
    Returns:
    the Value property.
  - getDatasetAnnotationRef
```
public String getDatasetAnnotationRef(int datasetIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getDatasetDescription
```
public String getDatasetDescription(int datasetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    
    Returns:
    the Description property.
  - getDatasetExperimenterGroupRef
```
public String getDatasetExperimenterGroupRef(int datasetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterGroupRef property of Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    
    Returns:
    the ExperimenterGroupRef property.
  - getDatasetExperimenterRef
```
public String getDatasetExperimenterRef(int datasetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterRef property of Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    
    Returns:
    the ExperimenterRef property.
  - getDatasetID
```
public String getDatasetID(int datasetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    
    Returns:
    the ID property.
  - getDatasetImageRef
```
public String getDatasetImageRef(int datasetIndex,
                        int imageRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ImageRef property of Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    imageRefIndex - ImageRef index (unused).
    
    Returns:
    the ImageRef property.
  - getDatasetName
```
public String getDatasetName(int datasetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of Dataset.
    
    Parameters:
    datasetIndex - the Dataset index.
    
    Returns:
    the Name property.
  - getDetectorAmplificationGain
```
public Double getDetectorAmplificationGain(int instrumentIndex,
                                  int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AmplificationGain property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the AmplificationGain property.
  - getDetectorAnnotationRef
```
public String getDetectorAnnotationRef(int instrumentIndex,
                              int detectorIndex,
                              int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getDetectorGain
```
public Double getDetectorGain(int instrumentIndex,
                     int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Gain property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the Gain property.
  - getDetectorID
```
public String getDetectorID(int instrumentIndex,
                   int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the ID property.
  - getDetectorLotNumber
```
public String getDetectorLotNumber(int instrumentIndex,
                          int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the LotNumber property.
  - getDetectorManufacturer
```
public String getDetectorManufacturer(int instrumentIndex,
                             int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the Manufacturer property.
  - getDetectorModel
```
public String getDetectorModel(int instrumentIndex,
                      int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the Model property.
  - getDetectorOffset
```
public Double getDetectorOffset(int instrumentIndex,
                       int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Offset property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the Offset property.
  - getDetectorSerialNumber
```
public String getDetectorSerialNumber(int instrumentIndex,
                             int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the SerialNumber property.
  - getDetectorType
```
public DetectorType getDetectorType(int instrumentIndex,
                           int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the Type property.
  - getDetectorVoltage
```
public ElectricPotential getDetectorVoltage(int instrumentIndex,
                                   int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Voltage property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the Voltage property.
  - getDetectorZoom
```
public Double getDetectorZoom(int instrumentIndex,
                     int detectorIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Zoom property of Detector.
    
    Parameters:
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    
    Returns:
    the Zoom property.
  - getDetectorSettingsBinning
```
public Binning getDetectorSettingsBinning(int imageIndex,
                                 int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Binning property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Binning property.
  - getDetectorSettingsGain
```
public Double getDetectorSettingsGain(int imageIndex,
                             int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Gain property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Gain property.
  - getDetectorSettingsID
```
public String getDetectorSettingsID(int imageIndex,
                           int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the ID property.
  - getDetectorSettingsIntegration
```
public PositiveInteger getDetectorSettingsIntegration(int imageIndex,
                                             int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Integration property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Integration property.
  - getDetectorSettingsOffset
```
public Double getDetectorSettingsOffset(int imageIndex,
                               int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Offset property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Offset property.
  - getDetectorSettingsReadOutRate
```
public Frequency getDetectorSettingsReadOutRate(int imageIndex,
                                       int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ReadOutRate property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the ReadOutRate property.
  - getDetectorSettingsVoltage
```
public ElectricPotential getDetectorSettingsVoltage(int imageIndex,
                                           int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Voltage property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Voltage property.
  - getDetectorSettingsZoom
```
public Double getDetectorSettingsZoom(int imageIndex,
                             int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Zoom property of DetectorSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Zoom property.
  - getDichroicAnnotationRef
```
public String getDichroicAnnotationRef(int instrumentIndex,
                              int dichroicIndex,
                              int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Dichroic.
    
    Parameters:
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getDichroicID
```
public String getDichroicID(int instrumentIndex,
                   int dichroicIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Dichroic.
    
    Parameters:
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    
    Returns:
    the ID property.
  - getDichroicLotNumber
```
public String getDichroicLotNumber(int instrumentIndex,
                          int dichroicIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Dichroic.
    
    Parameters:
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    
    Returns:
    the LotNumber property.
  - getDichroicManufacturer
```
public String getDichroicManufacturer(int instrumentIndex,
                             int dichroicIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Dichroic.
    
    Parameters:
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    
    Returns:
    the Manufacturer property.
  - getDichroicModel
```
public String getDichroicModel(int instrumentIndex,
                      int dichroicIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Dichroic.
    
    Parameters:
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    
    Returns:
    the Model property.
  - getDichroicSerialNumber
```
public String getDichroicSerialNumber(int instrumentIndex,
                             int dichroicIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Dichroic.
    
    Parameters:
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    
    Returns:
    the SerialNumber property.
  - getDoubleAnnotationAnnotationRef
```
public String getDoubleAnnotationAnnotationRef(int doubleAnnotationIndex,
                                      int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of DoubleAnnotation.
    
    Parameters:
    doubleAnnotationIndex - the DoubleAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getDoubleAnnotationAnnotator
```
public String getDoubleAnnotationAnnotator(int doubleAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of DoubleAnnotation.
    
    Parameters:
    doubleAnnotationIndex - the DoubleAnnotation index.
    
    Returns:
    the Annotator property.
  - getDoubleAnnotationDescription
```
public String getDoubleAnnotationDescription(int doubleAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of DoubleAnnotation.
    
    Parameters:
    doubleAnnotationIndex - the DoubleAnnotation index.
    
    Returns:
    the Description property.
  - getDoubleAnnotationID
```
public String getDoubleAnnotationID(int doubleAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of DoubleAnnotation.
    
    Parameters:
    doubleAnnotationIndex - the DoubleAnnotation index.
    
    Returns:
    the ID property.
  - getDoubleAnnotationNamespace
```
public String getDoubleAnnotationNamespace(int doubleAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of DoubleAnnotation.
    
    Parameters:
    doubleAnnotationIndex - the DoubleAnnotation index.
    
    Returns:
    the Namespace property.
  - getDoubleAnnotationValue
```
public Double getDoubleAnnotationValue(int doubleAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of DoubleAnnotation.
    
    Parameters:
    doubleAnnotationIndex - the DoubleAnnotation index.
    
    Returns:
    the Value property.
  - getEllipseAnnotationRef
```
public String getEllipseAnnotationRef(int ROIIndex,
                             int shapeIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getEllipseFillColor
```
public Color getEllipseFillColor(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getEllipseFillRule
```
public FillRule getEllipseFillRule(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getEllipseFontFamily
```
public FontFamily getEllipseFontFamily(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getEllipseFontSize
```
public Length getEllipseFontSize(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getEllipseFontStyle
```
public FontStyle getEllipseFontStyle(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getEllipseID
```
public String getEllipseID(int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getEllipseLineCap
```
public LineCap getEllipseLineCap(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getEllipseLocked
```
public Boolean getEllipseLocked(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getEllipseStrokeColor
```
public Color getEllipseStrokeColor(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getEllipseStrokeDashArray
```
public String getEllipseStrokeDashArray(int ROIIndex,
                               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getEllipseStrokeWidth
```
public Length getEllipseStrokeWidth(int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getEllipseText
```
public String getEllipseText(int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getEllipseTheC
```
public NonNegativeInteger getEllipseTheC(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getEllipseTheT
```
public NonNegativeInteger getEllipseTheT(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getEllipseTheZ
```
public NonNegativeInteger getEllipseTheZ(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getEllipseTransform
```
public AffineTransform getEllipseTransform(int ROIIndex,
                                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getEllipseVisible
```
public Boolean getEllipseVisible(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getEllipseRadiusX
```
public Double getEllipseRadiusX(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the RadiusX property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the RadiusX property.
  - getEllipseRadiusY
```
public Double getEllipseRadiusY(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the RadiusY property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the RadiusY property.
  - getEllipseX
```
public Double getEllipseX(int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the X property.
  - getEllipseY
```
public Double getEllipseY(int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y property of Ellipse.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Y property.
  - getExperimentDescription
```
public String getExperimentDescription(int experimentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of Experiment.
    
    Parameters:
    experimentIndex - the Experiment index.
    
    Returns:
    the Description property.
  - getExperimentExperimenterRef
```
public String getExperimentExperimenterRef(int experimentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterRef property of Experiment.
    
    Parameters:
    experimentIndex - the Experiment index.
    
    Returns:
    the ExperimenterRef property.
  - getExperimentID
```
public String getExperimentID(int experimentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Experiment.
    
    Parameters:
    experimentIndex - the Experiment index.
    
    Returns:
    the ID property.
  - getExperimentType
```
public ExperimentType getExperimentType(int experimentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Experiment.
    
    Parameters:
    experimentIndex - the Experiment index.
    
    Returns:
    the Type property.
  - getExperimenterAnnotationRef
```
public String getExperimenterAnnotationRef(int experimenterIndex,
                                  int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getExperimenterEmail
```
public String getExperimenterEmail(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Email property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the Email property.
  - getExperimenterFirstName
```
public String getExperimenterFirstName(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FirstName property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the FirstName property.
  - getExperimenterID
```
public String getExperimenterID(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the ID property.
  - getExperimenterInstitution
```
public String getExperimenterInstitution(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Institution property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the Institution property.
  - getExperimenterLastName
```
public String getExperimenterLastName(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LastName property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the LastName property.
  - getExperimenterMiddleName
```
public String getExperimenterMiddleName(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MiddleName property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the MiddleName property.
  - getExperimenterUserName
```
public String getExperimenterUserName(int experimenterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the UserName property of Experimenter.
    
    Parameters:
    experimenterIndex - the Experimenter index.
    
    Returns:
    the UserName property.
  - getExperimenterGroupAnnotationRef
```
public String getExperimenterGroupAnnotationRef(int experimenterGroupIndex,
                                       int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getExperimenterGroupDescription
```
public String getExperimenterGroupDescription(int experimenterGroupIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    
    Returns:
    the Description property.
  - getExperimenterGroupExperimenterRef
```
public String getExperimenterGroupExperimenterRef(int experimenterGroupIndex,
                                         int experimenterRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterRef property of ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    experimenterRefIndex - ExperimenterRef index (unused).
    
    Returns:
    the ExperimenterRef property.
  - getExperimenterGroupID
```
public String getExperimenterGroupID(int experimenterGroupIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    
    Returns:
    the ID property.
  - getExperimenterGroupLeader
```
public String getExperimenterGroupLeader(int experimenterGroupIndex,
                                int leaderIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Leader property of ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    leaderIndex - Leader index (unused).
    
    Returns:
    the Leader property.
  - getExperimenterGroupName
```
public String getExperimenterGroupName(int experimenterGroupIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of ExperimenterGroup.
    
    Parameters:
    experimenterGroupIndex - the ExperimenterGroup index.
    
    Returns:
    the Name property.
  - getFilamentAnnotationRef
```
public String getFilamentAnnotationRef(int instrumentIndex,
                              int lightSourceIndex,
                              int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getFilamentID
```
public String getFilamentID(int instrumentIndex,
                   int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the ID property.
  - getFilamentLotNumber
```
public String getFilamentLotNumber(int instrumentIndex,
                          int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the LotNumber property.
  - getFilamentManufacturer
```
public String getFilamentManufacturer(int instrumentIndex,
                             int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Manufacturer property.
  - getFilamentModel
```
public String getFilamentModel(int instrumentIndex,
                      int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Model property.
  - getFilamentPower
```
public Power getFilamentPower(int instrumentIndex,
                     int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Power property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Power property.
  - getFilamentSerialNumber
```
public String getFilamentSerialNumber(int instrumentIndex,
                             int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the SerialNumber property.
  - getFilamentType
```
public FilamentType getFilamentType(int instrumentIndex,
                           int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Filament.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Type property.
  - getFileAnnotationAnnotationRef
```
public String getFileAnnotationAnnotationRef(int fileAnnotationIndex,
                                    int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of FileAnnotation.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getFileAnnotationAnnotator
```
public String getFileAnnotationAnnotator(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of FileAnnotation.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the Annotator property.
  - getFileAnnotationDescription
```
public String getFileAnnotationDescription(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of FileAnnotation.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the Description property.
  - getFileAnnotationID
```
public String getFileAnnotationID(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of FileAnnotation.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the ID property.
  - getFileAnnotationNamespace
```
public String getFileAnnotationNamespace(int fileAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of FileAnnotation.
    
    Parameters:
    fileAnnotationIndex - the FileAnnotation index.
    
    Returns:
    the Namespace property.
  - getFilterAnnotationRef
```
public String getFilterAnnotationRef(int instrumentIndex,
                            int filterIndex,
                            int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getFilterFilterWheel
```
public String getFilterFilterWheel(int instrumentIndex,
                          int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FilterWheel property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the FilterWheel property.
  - getFilterID
```
public String getFilterID(int instrumentIndex,
                 int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the ID property.
  - getFilterLotNumber
```
public String getFilterLotNumber(int instrumentIndex,
                        int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the LotNumber property.
  - getFilterManufacturer
```
public String getFilterManufacturer(int instrumentIndex,
                           int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the Manufacturer property.
  - getFilterModel
```
public String getFilterModel(int instrumentIndex,
                    int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the Model property.
  - getFilterSerialNumber
```
public String getFilterSerialNumber(int instrumentIndex,
                           int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the SerialNumber property.
  - getFilterType
```
public FilterType getFilterType(int instrumentIndex,
                       int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Filter.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the Type property.
  - getFilterSetDichroicRef
```
public String getFilterSetDichroicRef(int instrumentIndex,
                             int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the DichroicRef property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the DichroicRef property.
  - getFilterSetEmissionFilterRef
```
public String getFilterSetEmissionFilterRef(int instrumentIndex,
                                   int filterSetIndex,
                                   int emissionFilterRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the EmissionFilterRef property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    emissionFilterRefIndex - EmissionFilterRef index (unused).
    
    Returns:
    the EmissionFilterRef property.
  - getFilterSetExcitationFilterRef
```
public String getFilterSetExcitationFilterRef(int instrumentIndex,
                                     int filterSetIndex,
                                     int excitationFilterRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExcitationFilterRef property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    excitationFilterRefIndex - ExcitationFilterRef index (unused).
    
    Returns:
    the ExcitationFilterRef property.
  - getFilterSetID
```
public String getFilterSetID(int instrumentIndex,
                    int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the ID property.
  - getFilterSetLotNumber
```
public String getFilterSetLotNumber(int instrumentIndex,
                           int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the LotNumber property.
  - getFilterSetManufacturer
```
public String getFilterSetManufacturer(int instrumentIndex,
                              int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the Manufacturer property.
  - getFilterSetModel
```
public String getFilterSetModel(int instrumentIndex,
                       int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the Model property.
  - getFilterSetSerialNumber
```
public String getFilterSetSerialNumber(int instrumentIndex,
                              int filterSetIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of FilterSet.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    
    Returns:
    the SerialNumber property.
  - getGenericExcitationSourceAnnotationRef
```
public String getGenericExcitationSourceAnnotationRef(int instrumentIndex,
                                             int lightSourceIndex,
                                             int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of GenericExcitationSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getGenericExcitationSourceID
```
public String getGenericExcitationSourceID(int instrumentIndex,
                                  int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of GenericExcitationSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the ID property.
  - getGenericExcitationSourceLotNumber
```
public String getGenericExcitationSourceLotNumber(int instrumentIndex,
                                         int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of GenericExcitationSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the LotNumber property.
  - getGenericExcitationSourceManufacturer
```
public String getGenericExcitationSourceManufacturer(int instrumentIndex,
                                            int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of GenericExcitationSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Manufacturer property.
  - getGenericExcitationSourceModel
```
public String getGenericExcitationSourceModel(int instrumentIndex,
                                     int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of GenericExcitationSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Model property.
  - getGenericExcitationSourcePower
```
public Power getGenericExcitationSourcePower(int instrumentIndex,
                                    int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Power property of GenericExcitationSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Power property.
  - getGenericExcitationSourceSerialNumber
```
public String getGenericExcitationSourceSerialNumber(int instrumentIndex,
                                            int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of GenericExcitationSource.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the SerialNumber property.
  - getImageAcquisitionDate
```
public Timestamp getImageAcquisitionDate(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AcquisitionDate property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the AcquisitionDate property.
  - getImageAnnotationRef
```
public String getImageAnnotationRef(int imageIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Image.
    
    Parameters:
    imageIndex - the Image index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getImageDescription
```
public String getImageDescription(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Description property.
  - getImageExperimentRef
```
public String getImageExperimentRef(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimentRef property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the ExperimentRef property.
  - getImageExperimenterGroupRef
```
public String getImageExperimenterGroupRef(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterGroupRef property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the ExperimenterGroupRef property.
  - getImageExperimenterRef
```
public String getImageExperimenterRef(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterRef property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the ExperimenterRef property.
  - getImageID
```
public String getImageID(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the ID property.
  - getImageInstrumentRef
```
public String getImageInstrumentRef(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the InstrumentRef property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the InstrumentRef property.
  - getImageMicrobeamManipulationRef
```
public String getImageMicrobeamManipulationRef(int imageIndex,
                                      int microbeamManipulationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MicrobeamManipulationRef property of Image.
    
    Parameters:
    imageIndex - the Image index.
    microbeamManipulationRefIndex - MicrobeamManipulationRef index (unused).
    
    Returns:
    the MicrobeamManipulationRef property.
  - getImageName
```
public String getImageName(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of Image.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Name property.
  - getImageROIRef
```
public String getImageROIRef(int imageIndex,
                    int ROIRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ROIRef property of Image.
    
    Parameters:
    imageIndex - the Image index.
    ROIRefIndex - ROIRef index (unused).
    
    Returns:
    the ROIRef property.
  - getImagingEnvironmentAirPressure
```
public Pressure getImagingEnvironmentAirPressure(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AirPressure property of ImagingEnvironment.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the AirPressure property.
  - getImagingEnvironmentCO2Percent
```
public PercentFraction getImagingEnvironmentCO2Percent(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the CO2Percent property of ImagingEnvironment.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the CO2Percent property.
  - getImagingEnvironmentHumidity
```
public PercentFraction getImagingEnvironmentHumidity(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Humidity property of ImagingEnvironment.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Humidity property.
  - getImagingEnvironmentTemperature
```
public Temperature getImagingEnvironmentTemperature(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Temperature property of ImagingEnvironment.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Temperature property.
  - getInstrumentAnnotationRef
```
public String getInstrumentAnnotationRef(int instrumentIndex,
                                int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Instrument.
    
    Parameters:
    instrumentIndex - the Instrument index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getInstrumentID
```
public String getInstrumentID(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Instrument.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the ID property.
  - getLabelAnnotationRef
```
public String getLabelAnnotationRef(int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getLabelFillColor
```
public Color getLabelFillColor(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getLabelFillRule
```
public FillRule getLabelFillRule(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getLabelFontFamily
```
public FontFamily getLabelFontFamily(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getLabelFontSize
```
public Length getLabelFontSize(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getLabelFontStyle
```
public FontStyle getLabelFontStyle(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getLabelID
```
public String getLabelID(int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getLabelLineCap
```
public LineCap getLabelLineCap(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getLabelLocked
```
public Boolean getLabelLocked(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getLabelStrokeColor
```
public Color getLabelStrokeColor(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getLabelStrokeDashArray
```
public String getLabelStrokeDashArray(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getLabelStrokeWidth
```
public Length getLabelStrokeWidth(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getLabelText
```
public String getLabelText(int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getLabelTheC
```
public NonNegativeInteger getLabelTheC(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getLabelTheT
```
public NonNegativeInteger getLabelTheT(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getLabelTheZ
```
public NonNegativeInteger getLabelTheZ(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getLabelTransform
```
public AffineTransform getLabelTransform(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getLabelVisible
```
public Boolean getLabelVisible(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getLabelX
```
public Double getLabelX(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the X property.
  - getLabelY
```
public Double getLabelY(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y property of Label.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Y property.
  - getLaserAnnotationRef
```
public String getLaserAnnotationRef(int instrumentIndex,
                           int lightSourceIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getLaserID
```
public String getLaserID(int instrumentIndex,
                int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the ID property.
  - getLaserLotNumber
```
public String getLaserLotNumber(int instrumentIndex,
                       int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the LotNumber property.
  - getLaserManufacturer
```
public String getLaserManufacturer(int instrumentIndex,
                          int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Manufacturer property.
  - getLaserModel
```
public String getLaserModel(int instrumentIndex,
                   int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Model property.
  - getLaserPower
```
public Power getLaserPower(int instrumentIndex,
                  int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Power property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Power property.
  - getLaserSerialNumber
```
public String getLaserSerialNumber(int instrumentIndex,
                          int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the SerialNumber property.
  - getLaserFrequencyMultiplication
```
public PositiveInteger getLaserFrequencyMultiplication(int instrumentIndex,
                                              int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FrequencyMultiplication property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the FrequencyMultiplication property.
  - getLaserLaserMedium
```
public LaserMedium getLaserLaserMedium(int instrumentIndex,
                              int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LaserMedium property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the LaserMedium property.
  - getLaserPockelCell
```
public Boolean getLaserPockelCell(int instrumentIndex,
                         int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PockelCell property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the PockelCell property.
  - getLaserPulse
```
public Pulse getLaserPulse(int instrumentIndex,
                  int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Pulse property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Pulse property.
  - getLaserPump
```
public String getLaserPump(int instrumentIndex,
                  int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Pump property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Pump property.
  - getLaserRepetitionRate
```
public Frequency getLaserRepetitionRate(int instrumentIndex,
                               int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the RepetitionRate property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the RepetitionRate property.
  - getLaserTuneable
```
public Boolean getLaserTuneable(int instrumentIndex,
                       int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Tuneable property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Tuneable property.
  - getLaserType
```
public LaserType getLaserType(int instrumentIndex,
                     int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Type property.
  - getLaserWavelength
```
public Length getLaserWavelength(int instrumentIndex,
                        int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Wavelength property of Laser.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Wavelength property.
  - getLightEmittingDiodeAnnotationRef
```
public String getLightEmittingDiodeAnnotationRef(int instrumentIndex,
                                        int lightSourceIndex,
                                        int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of LightEmittingDiode.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getLightEmittingDiodeID
```
public String getLightEmittingDiodeID(int instrumentIndex,
                             int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of LightEmittingDiode.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the ID property.
  - getLightEmittingDiodeLotNumber
```
public String getLightEmittingDiodeLotNumber(int instrumentIndex,
                                    int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of LightEmittingDiode.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the LotNumber property.
  - getLightEmittingDiodeManufacturer
```
public String getLightEmittingDiodeManufacturer(int instrumentIndex,
                                       int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of LightEmittingDiode.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Manufacturer property.
  - getLightEmittingDiodeModel
```
public String getLightEmittingDiodeModel(int instrumentIndex,
                                int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of LightEmittingDiode.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Model property.
  - getLightEmittingDiodePower
```
public Power getLightEmittingDiodePower(int instrumentIndex,
                               int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Power property of LightEmittingDiode.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the Power property.
  - getLightEmittingDiodeSerialNumber
```
public String getLightEmittingDiodeSerialNumber(int instrumentIndex,
                                       int lightSourceIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of LightEmittingDiode.
    
    Parameters:
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    
    Returns:
    the SerialNumber property.
  - getLightPathAnnotationRef
```
public String getLightPathAnnotationRef(int imageIndex,
                               int channelIndex,
                               int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of LightPath.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getLightPathDichroicRef
```
public String getLightPathDichroicRef(int imageIndex,
                             int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the DichroicRef property of LightPath.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the DichroicRef property.
  - getLightPathEmissionFilterRef
```
public String getLightPathEmissionFilterRef(int imageIndex,
                                   int channelIndex,
                                   int emissionFilterRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the EmissionFilterRef property of LightPath.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    emissionFilterRefIndex - EmissionFilterRef index (unused).
    
    Returns:
    the EmissionFilterRef property.
  - getLightPathExcitationFilterRef
```
public String getLightPathExcitationFilterRef(int imageIndex,
                                     int channelIndex,
                                     int excitationFilterRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExcitationFilterRef property of LightPath.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    excitationFilterRefIndex - ExcitationFilterRef index (unused).
    
    Returns:
    the ExcitationFilterRef property.
  - getChannelLightSourceSettingsAttenuation
```
public PercentFraction getChannelLightSourceSettingsAttenuation(int imageIndex,
                                                       int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Attenuation property of LightSourceSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Attenuation property.
  - getMicrobeamManipulationLightSourceSettingsAttenuation
```
public PercentFraction getMicrobeamManipulationLightSourceSettingsAttenuation(int experimentIndex,
                                                                     int microbeamManipulationIndex,
                                                                     int lightSourceSettingsIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Attenuation property of LightSourceSettings.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
    
    Returns:
    the Attenuation property.
  - getChannelLightSourceSettingsID
```
public String getChannelLightSourceSettingsID(int imageIndex,
                                     int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of LightSourceSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the ID property.
  - getMicrobeamManipulationLightSourceSettingsID
```
public String getMicrobeamManipulationLightSourceSettingsID(int experimentIndex,
                                                   int microbeamManipulationIndex,
                                                   int lightSourceSettingsIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of LightSourceSettings.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
    
    Returns:
    the ID property.
  - getChannelLightSourceSettingsWavelength
```
public Length getChannelLightSourceSettingsWavelength(int imageIndex,
                                             int channelIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Wavelength property of LightSourceSettings.
    
    Parameters:
    imageIndex - the Image index.
    channelIndex - the Channel index.
    
    Returns:
    the Wavelength property.
  - getMicrobeamManipulationLightSourceSettingsWavelength
```
public Length getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex,
                                                           int microbeamManipulationIndex,
                                                           int lightSourceSettingsIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Wavelength property of LightSourceSettings.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
    
    Returns:
    the Wavelength property.
  - getLineAnnotationRef
```
public String getLineAnnotationRef(int ROIIndex,
                          int shapeIndex,
                          int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getLineFillColor
```
public Color getLineFillColor(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getLineFillRule
```
public FillRule getLineFillRule(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getLineFontFamily
```
public FontFamily getLineFontFamily(int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getLineFontSize
```
public Length getLineFontSize(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getLineFontStyle
```
public FontStyle getLineFontStyle(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getLineID
```
public String getLineID(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getLineLineCap
```
public LineCap getLineLineCap(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getLineLocked
```
public Boolean getLineLocked(int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getLineStrokeColor
```
public Color getLineStrokeColor(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getLineStrokeDashArray
```
public String getLineStrokeDashArray(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getLineStrokeWidth
```
public Length getLineStrokeWidth(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getLineText
```
public String getLineText(int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getLineTheC
```
public NonNegativeInteger getLineTheC(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getLineTheT
```
public NonNegativeInteger getLineTheT(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getLineTheZ
```
public NonNegativeInteger getLineTheZ(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getLineTransform
```
public AffineTransform getLineTransform(int ROIIndex,
                               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getLineVisible
```
public Boolean getLineVisible(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getLineMarkerEnd
```
public Marker getLineMarkerEnd(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MarkerEnd property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the MarkerEnd property.
  - getLineMarkerStart
```
public Marker getLineMarkerStart(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MarkerStart property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the MarkerStart property.
  - getLineX1
```
public Double getLineX1(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X1 property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the X1 property.
  - getLineX2
```
public Double getLineX2(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X2 property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the X2 property.
  - getLineY1
```
public Double getLineY1(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y1 property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Y1 property.
  - getLineY2
```
public Double getLineY2(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y2 property of Line.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Y2 property.
  - getListAnnotationAnnotationRef
```
public String getListAnnotationAnnotationRef(int listAnnotationIndex,
                                    int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of ListAnnotation.
    
    Parameters:
    listAnnotationIndex - the ListAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getListAnnotationAnnotator
```
public String getListAnnotationAnnotator(int listAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of ListAnnotation.
    
    Parameters:
    listAnnotationIndex - the ListAnnotation index.
    
    Returns:
    the Annotator property.
  - getListAnnotationDescription
```
public String getListAnnotationDescription(int listAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of ListAnnotation.
    
    Parameters:
    listAnnotationIndex - the ListAnnotation index.
    
    Returns:
    the Description property.
  - getListAnnotationID
```
public String getListAnnotationID(int listAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of ListAnnotation.
    
    Parameters:
    listAnnotationIndex - the ListAnnotation index.
    
    Returns:
    the ID property.
  - getListAnnotationNamespace
```
public String getListAnnotationNamespace(int listAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of ListAnnotation.
    
    Parameters:
    listAnnotationIndex - the ListAnnotation index.
    
    Returns:
    the Namespace property.
  - getLongAnnotationAnnotationRef
```
public String getLongAnnotationAnnotationRef(int longAnnotationIndex,
                                    int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of LongAnnotation.
    
    Parameters:
    longAnnotationIndex - the LongAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getLongAnnotationAnnotator
```
public String getLongAnnotationAnnotator(int longAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of LongAnnotation.
    
    Parameters:
    longAnnotationIndex - the LongAnnotation index.
    
    Returns:
    the Annotator property.
  - getLongAnnotationDescription
```
public String getLongAnnotationDescription(int longAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of LongAnnotation.
    
    Parameters:
    longAnnotationIndex - the LongAnnotation index.
    
    Returns:
    the Description property.
  - getLongAnnotationID
```
public String getLongAnnotationID(int longAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of LongAnnotation.
    
    Parameters:
    longAnnotationIndex - the LongAnnotation index.
    
    Returns:
    the ID property.
  - getLongAnnotationNamespace
```
public String getLongAnnotationNamespace(int longAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of LongAnnotation.
    
    Parameters:
    longAnnotationIndex - the LongAnnotation index.
    
    Returns:
    the Namespace property.
  - getLongAnnotationValue
```
public Long getLongAnnotationValue(int longAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of LongAnnotation.
    
    Parameters:
    longAnnotationIndex - the LongAnnotation index.
    
    Returns:
    the Value property.
  - getMapAnnotationAnnotationRef
```
public String getMapAnnotationAnnotationRef(int mapAnnotationIndex,
                                   int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of MapAnnotation.
    
    Parameters:
    mapAnnotationIndex - the MapAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getMapAnnotationAnnotator
```
public String getMapAnnotationAnnotator(int mapAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of MapAnnotation.
    
    Parameters:
    mapAnnotationIndex - the MapAnnotation index.
    
    Returns:
    the Annotator property.
  - getMapAnnotationDescription
```
public String getMapAnnotationDescription(int mapAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of MapAnnotation.
    
    Parameters:
    mapAnnotationIndex - the MapAnnotation index.
    
    Returns:
    the Description property.
  - getMapAnnotationID
```
public String getMapAnnotationID(int mapAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of MapAnnotation.
    
    Parameters:
    mapAnnotationIndex - the MapAnnotation index.
    
    Returns:
    the ID property.
  - getMapAnnotationNamespace
```
public String getMapAnnotationNamespace(int mapAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of MapAnnotation.
    
    Parameters:
    mapAnnotationIndex - the MapAnnotation index.
    
    Returns:
    the Namespace property.
  - getMaskAnnotationRef
```
public String getMaskAnnotationRef(int ROIIndex,
                          int shapeIndex,
                          int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getMaskFillColor
```
public Color getMaskFillColor(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getMaskFillRule
```
public FillRule getMaskFillRule(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getMaskFontFamily
```
public FontFamily getMaskFontFamily(int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getMaskFontSize
```
public Length getMaskFontSize(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getMaskFontStyle
```
public FontStyle getMaskFontStyle(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getMaskID
```
public String getMaskID(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getMaskLineCap
```
public LineCap getMaskLineCap(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getMaskLocked
```
public Boolean getMaskLocked(int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getMaskStrokeColor
```
public Color getMaskStrokeColor(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getMaskStrokeDashArray
```
public String getMaskStrokeDashArray(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getMaskStrokeWidth
```
public Length getMaskStrokeWidth(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getMaskText
```
public String getMaskText(int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getMaskTheC
```
public NonNegativeInteger getMaskTheC(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getMaskTheT
```
public NonNegativeInteger getMaskTheT(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getMaskTheZ
```
public NonNegativeInteger getMaskTheZ(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getMaskTransform
```
public AffineTransform getMaskTransform(int ROIIndex,
                               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getMaskVisible
```
public Boolean getMaskVisible(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getMaskHeight
```
public Double getMaskHeight(int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Height property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Height property.
  - getMaskWidth
```
public Double getMaskWidth(int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Width property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Width property.
  - getMaskX
```
public Double getMaskX(int ROIIndex,
              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the X property.
  - getMaskY
```
public Double getMaskY(int ROIIndex,
              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y property of Mask.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Y property.
  - getMicrobeamManipulationDescription
```
public String getMicrobeamManipulationDescription(int experimentIndex,
                                         int microbeamManipulationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of MicrobeamManipulation.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    
    Returns:
    the Description property.
  - getMicrobeamManipulationExperimenterRef
```
public String getMicrobeamManipulationExperimenterRef(int experimentIndex,
                                             int microbeamManipulationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterRef property of MicrobeamManipulation.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    
    Returns:
    the ExperimenterRef property.
  - getMicrobeamManipulationID
```
public String getMicrobeamManipulationID(int experimentIndex,
                                int microbeamManipulationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of MicrobeamManipulation.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    
    Returns:
    the ID property.
  - getMicrobeamManipulationROIRef
```
public String getMicrobeamManipulationROIRef(int experimentIndex,
                                    int microbeamManipulationIndex,
                                    int ROIRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ROIRef property of MicrobeamManipulation.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    ROIRefIndex - ROIRef index (unused).
    
    Returns:
    the ROIRef property.
  - getMicrobeamManipulationType
```
public MicrobeamManipulationType getMicrobeamManipulationType(int experimentIndex,
                                                     int microbeamManipulationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of MicrobeamManipulation.
    
    Parameters:
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    
    Returns:
    the Type property.
  - getMicroscopeLotNumber
```
public String getMicroscopeLotNumber(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Microscope.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the LotNumber property.
  - getMicroscopeManufacturer
```
public String getMicroscopeManufacturer(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Microscope.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the Manufacturer property.
  - getMicroscopeModel
```
public String getMicroscopeModel(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Microscope.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the Model property.
  - getMicroscopeSerialNumber
```
public String getMicroscopeSerialNumber(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Microscope.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the SerialNumber property.
  - getMicroscopeType
```
public MicroscopeType getMicroscopeType(int instrumentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Microscope.
    
    Parameters:
    instrumentIndex - the Instrument index.
    
    Returns:
    the Type property.
  - getObjectiveAnnotationRef
```
public String getObjectiveAnnotationRef(int instrumentIndex,
                               int objectiveIndex,
                               int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getObjectiveCalibratedMagnification
```
public Double getObjectiveCalibratedMagnification(int instrumentIndex,
                                         int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the CalibratedMagnification property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the CalibratedMagnification property.
  - getObjectiveCorrection
```
public Correction getObjectiveCorrection(int instrumentIndex,
                                int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Correction property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the Correction property.
  - getObjectiveID
```
public String getObjectiveID(int instrumentIndex,
                    int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the ID property.
  - getObjectiveImmersion
```
public Immersion getObjectiveImmersion(int instrumentIndex,
                              int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Immersion property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the Immersion property.
  - getObjectiveIris
```
public Boolean getObjectiveIris(int instrumentIndex,
                       int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Iris property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the Iris property.
  - getObjectiveLensNA
```
public Double getObjectiveLensNA(int instrumentIndex,
                        int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LensNA property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the LensNA property.
  - getObjectiveLotNumber
```
public String getObjectiveLotNumber(int instrumentIndex,
                           int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LotNumber property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the LotNumber property.
  - getObjectiveManufacturer
```
public String getObjectiveManufacturer(int instrumentIndex,
                              int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Manufacturer property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the Manufacturer property.
  - getObjectiveModel
```
public String getObjectiveModel(int instrumentIndex,
                       int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Model property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the Model property.
  - getObjectiveNominalMagnification
```
public Double getObjectiveNominalMagnification(int instrumentIndex,
                                      int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the NominalMagnification property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the NominalMagnification property.
  - getObjectiveSerialNumber
```
public String getObjectiveSerialNumber(int instrumentIndex,
                              int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SerialNumber property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the SerialNumber property.
  - getObjectiveWorkingDistance
```
public Length getObjectiveWorkingDistance(int instrumentIndex,
                                 int objectiveIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the WorkingDistance property of Objective.
    
    Parameters:
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    
    Returns:
    the WorkingDistance property.
  - getObjectiveSettingsCorrectionCollar
```
public Double getObjectiveSettingsCorrectionCollar(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the CorrectionCollar property of ObjectiveSettings.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the CorrectionCollar property.
  - getObjectiveSettingsID
```
public String getObjectiveSettingsID(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of ObjectiveSettings.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the ID property.
  - getObjectiveSettingsMedium
```
public Medium getObjectiveSettingsMedium(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Medium property of ObjectiveSettings.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Medium property.
  - getObjectiveSettingsRefractiveIndex
```
public Double getObjectiveSettingsRefractiveIndex(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the RefractiveIndex property of ObjectiveSettings.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the RefractiveIndex property.
  - getPixelsBigEndian
```
public Boolean getPixelsBigEndian(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the BigEndian property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the BigEndian property.
  - getPixelsDimensionOrder
```
public DimensionOrder getPixelsDimensionOrder(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the DimensionOrder property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the DimensionOrder property.
  - getPixelsID
```
public String getPixelsID(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the ID property.
  - getPixelsInterleaved
```
public Boolean getPixelsInterleaved(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Interleaved property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Interleaved property.
  - getPixelsPhysicalSizeX
```
public Length getPixelsPhysicalSizeX(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PhysicalSizeX property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the PhysicalSizeX property.
  - getPixelsPhysicalSizeY
```
public Length getPixelsPhysicalSizeY(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PhysicalSizeY property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the PhysicalSizeY property.
  - getPixelsPhysicalSizeZ
```
public Length getPixelsPhysicalSizeZ(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PhysicalSizeZ property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the PhysicalSizeZ property.
  - getPixelsSignificantBits
```
public PositiveInteger getPixelsSignificantBits(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SignificantBits property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the SignificantBits property.
  - getPixelsSizeC
```
public PositiveInteger getPixelsSizeC(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SizeC property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the SizeC property.
  - getPixelsSizeT
```
public PositiveInteger getPixelsSizeT(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SizeT property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the SizeT property.
  - getPixelsSizeX
```
public PositiveInteger getPixelsSizeX(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SizeX property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the SizeX property.
  - getPixelsSizeY
```
public PositiveInteger getPixelsSizeY(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SizeY property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the SizeY property.
  - getPixelsSizeZ
```
public PositiveInteger getPixelsSizeZ(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the SizeZ property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the SizeZ property.
  - getPixelsTimeIncrement
```
public Time getPixelsTimeIncrement(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TimeIncrement property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the TimeIncrement property.
  - getPixelsType
```
public PixelType getPixelsType(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Pixels.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Type property.
  - getPlaneAnnotationRef
```
public String getPlaneAnnotationRef(int imageIndex,
                           int planeIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getPlaneDeltaT
```
public Time getPlaneDeltaT(int imageIndex,
                  int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the DeltaT property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the DeltaT property.
  - getPlaneExposureTime
```
public Time getPlaneExposureTime(int imageIndex,
                        int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExposureTime property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the ExposureTime property.
  - getPlaneHashSHA1
```
public String getPlaneHashSHA1(int imageIndex,
                      int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the HashSHA1 property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the HashSHA1 property.
  - getPlanePositionX
```
public Length getPlanePositionX(int imageIndex,
                       int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PositionX property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the PositionX property.
  - getPlanePositionY
```
public Length getPlanePositionY(int imageIndex,
                       int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PositionY property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the PositionY property.
  - getPlanePositionZ
```
public Length getPlanePositionZ(int imageIndex,
                       int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PositionZ property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the PositionZ property.
  - getPlaneTheC
```
public NonNegativeInteger getPlaneTheC(int imageIndex,
                              int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the TheC property.
  - getPlaneTheT
```
public NonNegativeInteger getPlaneTheT(int imageIndex,
                              int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the TheT property.
  - getPlaneTheZ
```
public NonNegativeInteger getPlaneTheZ(int imageIndex,
                              int planeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Plane.
    
    Parameters:
    imageIndex - the Image index.
    planeIndex - the Plane index.
    
    Returns:
    the TheZ property.
  - getPlateAnnotationRef
```
public String getPlateAnnotationRef(int plateIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getPlateColumnNamingConvention
```
public NamingConvention getPlateColumnNamingConvention(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ColumnNamingConvention property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the ColumnNamingConvention property.
  - getPlateColumns
```
public PositiveInteger getPlateColumns(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Columns property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the Columns property.
  - getPlateDescription
```
public String getPlateDescription(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the Description property.
  - getPlateExternalIdentifier
```
public String getPlateExternalIdentifier(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExternalIdentifier property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the ExternalIdentifier property.
  - getPlateFieldIndex
```
public NonNegativeInteger getPlateFieldIndex(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FieldIndex property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the FieldIndex property.
  - getPlateID
```
public String getPlateID(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the ID property.
  - getPlateName
```
public String getPlateName(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the Name property.
  - getPlateRowNamingConvention
```
public NamingConvention getPlateRowNamingConvention(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the RowNamingConvention property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the RowNamingConvention property.
  - getPlateRows
```
public PositiveInteger getPlateRows(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Rows property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the Rows property.
  - getPlateStatus
```
public String getPlateStatus(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Status property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the Status property.
  - getPlateWellOriginX
```
public Length getPlateWellOriginX(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the WellOriginX property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the WellOriginX property.
  - getPlateWellOriginY
```
public Length getPlateWellOriginY(int plateIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the WellOriginY property of Plate.
    
    Parameters:
    plateIndex - the Plate index.
    
    Returns:
    the WellOriginY property.
  - getPlateAcquisitionAnnotationRef
```
public String getPlateAcquisitionAnnotationRef(int plateIndex,
                                      int plateAcquisitionIndex,
                                      int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getPlateAcquisitionDescription
```
public String getPlateAcquisitionDescription(int plateIndex,
                                    int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the Description property.
  - getPlateAcquisitionEndTime
```
public Timestamp getPlateAcquisitionEndTime(int plateIndex,
                                   int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the EndTime property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the EndTime property.
  - getPlateAcquisitionID
```
public String getPlateAcquisitionID(int plateIndex,
                           int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the ID property.
  - getPlateAcquisitionMaximumFieldCount
```
public PositiveInteger getPlateAcquisitionMaximumFieldCount(int plateIndex,
                                                   int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MaximumFieldCount property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the MaximumFieldCount property.
  - getPlateAcquisitionName
```
public String getPlateAcquisitionName(int plateIndex,
                             int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the Name property.
  - getPlateAcquisitionStartTime
```
public Timestamp getPlateAcquisitionStartTime(int plateIndex,
                                     int plateAcquisitionIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StartTime property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    
    Returns:
    the StartTime property.
  - getPlateAcquisitionWellSampleRef
```
public String getPlateAcquisitionWellSampleRef(int plateIndex,
                                      int plateAcquisitionIndex,
                                      int wellSampleRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the WellSampleRef property of PlateAcquisition.
    
    Parameters:
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    wellSampleRefIndex - WellSampleRef index (unused).
    
    Returns:
    the WellSampleRef property.
  - getPointAnnotationRef
```
public String getPointAnnotationRef(int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getPointFillColor
```
public Color getPointFillColor(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getPointFillRule
```
public FillRule getPointFillRule(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getPointFontFamily
```
public FontFamily getPointFontFamily(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getPointFontSize
```
public Length getPointFontSize(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getPointFontStyle
```
public FontStyle getPointFontStyle(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getPointID
```
public String getPointID(int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getPointLineCap
```
public LineCap getPointLineCap(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getPointLocked
```
public Boolean getPointLocked(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getPointStrokeColor
```
public Color getPointStrokeColor(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getPointStrokeDashArray
```
public String getPointStrokeDashArray(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getPointStrokeWidth
```
public Length getPointStrokeWidth(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getPointText
```
public String getPointText(int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getPointTheC
```
public NonNegativeInteger getPointTheC(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getPointTheT
```
public NonNegativeInteger getPointTheT(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getPointTheZ
```
public NonNegativeInteger getPointTheZ(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getPointTransform
```
public AffineTransform getPointTransform(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getPointVisible
```
public Boolean getPointVisible(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getPointX
```
public Double getPointX(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the X property.
  - getPointY
```
public Double getPointY(int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y property of Point.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Y property.
  - getPolygonAnnotationRef
```
public String getPolygonAnnotationRef(int ROIIndex,
                             int shapeIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getPolygonFillColor
```
public Color getPolygonFillColor(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getPolygonFillRule
```
public FillRule getPolygonFillRule(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getPolygonFontFamily
```
public FontFamily getPolygonFontFamily(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getPolygonFontSize
```
public Length getPolygonFontSize(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getPolygonFontStyle
```
public FontStyle getPolygonFontStyle(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getPolygonID
```
public String getPolygonID(int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getPolygonLineCap
```
public LineCap getPolygonLineCap(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getPolygonLocked
```
public Boolean getPolygonLocked(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getPolygonStrokeColor
```
public Color getPolygonStrokeColor(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getPolygonStrokeDashArray
```
public String getPolygonStrokeDashArray(int ROIIndex,
                               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getPolygonStrokeWidth
```
public Length getPolygonStrokeWidth(int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getPolygonText
```
public String getPolygonText(int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getPolygonTheC
```
public NonNegativeInteger getPolygonTheC(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getPolygonTheT
```
public NonNegativeInteger getPolygonTheT(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getPolygonTheZ
```
public NonNegativeInteger getPolygonTheZ(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getPolygonTransform
```
public AffineTransform getPolygonTransform(int ROIIndex,
                                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getPolygonVisible
```
public Boolean getPolygonVisible(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getPolygonPoints
```
public String getPolygonPoints(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Points property of Polygon.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Points property.
  - getPolylineAnnotationRef
```
public String getPolylineAnnotationRef(int ROIIndex,
                              int shapeIndex,
                              int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getPolylineFillColor
```
public Color getPolylineFillColor(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getPolylineFillRule
```
public FillRule getPolylineFillRule(int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getPolylineFontFamily
```
public FontFamily getPolylineFontFamily(int ROIIndex,
                               int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getPolylineFontSize
```
public Length getPolylineFontSize(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getPolylineFontStyle
```
public FontStyle getPolylineFontStyle(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getPolylineID
```
public String getPolylineID(int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getPolylineLineCap
```
public LineCap getPolylineLineCap(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getPolylineLocked
```
public Boolean getPolylineLocked(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getPolylineStrokeColor
```
public Color getPolylineStrokeColor(int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getPolylineStrokeDashArray
```
public String getPolylineStrokeDashArray(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getPolylineStrokeWidth
```
public Length getPolylineStrokeWidth(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getPolylineText
```
public String getPolylineText(int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getPolylineTheC
```
public NonNegativeInteger getPolylineTheC(int ROIIndex,
                                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getPolylineTheT
```
public NonNegativeInteger getPolylineTheT(int ROIIndex,
                                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getPolylineTheZ
```
public NonNegativeInteger getPolylineTheZ(int ROIIndex,
                                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getPolylineTransform
```
public AffineTransform getPolylineTransform(int ROIIndex,
                                   int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getPolylineVisible
```
public Boolean getPolylineVisible(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getPolylineMarkerEnd
```
public Marker getPolylineMarkerEnd(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MarkerEnd property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the MarkerEnd property.
  - getPolylineMarkerStart
```
public Marker getPolylineMarkerStart(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the MarkerStart property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the MarkerStart property.
  - getPolylinePoints
```
public String getPolylinePoints(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Points property of Polyline.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Points property.
  - getProjectAnnotationRef
```
public String getProjectAnnotationRef(int projectIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Project.
    
    Parameters:
    projectIndex - the Project index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getProjectDatasetRef
```
public String getProjectDatasetRef(int projectIndex,
                          int datasetRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the DatasetRef property of Project.
    
    Parameters:
    projectIndex - the Project index.
    datasetRefIndex - DatasetRef index (unused).
    
    Returns:
    the DatasetRef property.
  - getProjectDescription
```
public String getProjectDescription(int projectIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of Project.
    
    Parameters:
    projectIndex - the Project index.
    
    Returns:
    the Description property.
  - getProjectExperimenterGroupRef
```
public String getProjectExperimenterGroupRef(int projectIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterGroupRef property of Project.
    
    Parameters:
    projectIndex - the Project index.
    
    Returns:
    the ExperimenterGroupRef property.
  - getProjectExperimenterRef
```
public String getProjectExperimenterRef(int projectIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExperimenterRef property of Project.
    
    Parameters:
    projectIndex - the Project index.
    
    Returns:
    the ExperimenterRef property.
  - getProjectID
```
public String getProjectID(int projectIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Project.
    
    Parameters:
    projectIndex - the Project index.
    
    Returns:
    the ID property.
  - getProjectName
```
public String getProjectName(int projectIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of Project.
    
    Parameters:
    projectIndex - the Project index.
    
    Returns:
    the Name property.
  - getROIAnnotationRef
```
public String getROIAnnotationRef(int ROIIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of ROI.
    
    Parameters:
    ROIIndex - the ROI index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getROIDescription
```
public String getROIDescription(int ROIIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of ROI.
    
    Parameters:
    ROIIndex - the ROI index.
    
    Returns:
    the Description property.
  - getROIID
```
public String getROIID(int ROIIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of ROI.
    
    Parameters:
    ROIIndex - the ROI index.
    
    Returns:
    the ID property.
  - getROIName
```
public String getROIName(int ROIIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of ROI.
    
    Parameters:
    ROIIndex - the ROI index.
    
    Returns:
    the Name property.
  - getROINamespace
```
public String getROINamespace(int ROIIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of ROI.
    
    Parameters:
    ROIIndex - the ROI index.
    
    Returns:
    the Namespace property.
  - getReagentAnnotationRef
```
public String getReagentAnnotationRef(int screenIndex,
                             int reagentIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Reagent.
    
    Parameters:
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getReagentDescription
```
public String getReagentDescription(int screenIndex,
                           int reagentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of Reagent.
    
    Parameters:
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    
    Returns:
    the Description property.
  - getReagentID
```
public String getReagentID(int screenIndex,
                  int reagentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Reagent.
    
    Parameters:
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    
    Returns:
    the ID property.
  - getReagentName
```
public String getReagentName(int screenIndex,
                    int reagentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of Reagent.
    
    Parameters:
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    
    Returns:
    the Name property.
  - getReagentReagentIdentifier
```
public String getReagentReagentIdentifier(int screenIndex,
                                 int reagentIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ReagentIdentifier property of Reagent.
    
    Parameters:
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    
    Returns:
    the ReagentIdentifier property.
  - getRectangleAnnotationRef
```
public String getRectangleAnnotationRef(int ROIIndex,
                               int shapeIndex,
                               int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getRectangleFillColor
```
public Color getRectangleFillColor(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillColor property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillColor property.
  - getRectangleFillRule
```
public FillRule getRectangleFillRule(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FillRule property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FillRule property.
  - getRectangleFontFamily
```
public FontFamily getRectangleFontFamily(int ROIIndex,
                                int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontFamily property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontFamily property.
  - getRectangleFontSize
```
public Length getRectangleFontSize(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontSize property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontSize property.
  - getRectangleFontStyle
```
public FontStyle getRectangleFontStyle(int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FontStyle property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the FontStyle property.
  - getRectangleID
```
public String getRectangleID(int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the ID property.
  - getRectangleLineCap
```
public LineCap getRectangleLineCap(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the LineCap property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the LineCap property.
  - getRectangleLocked
```
public Boolean getRectangleLocked(int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Locked property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Locked property.
  - getRectangleStrokeColor
```
public Color getRectangleStrokeColor(int ROIIndex,
                            int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeColor property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeColor property.
  - getRectangleStrokeDashArray
```
public String getRectangleStrokeDashArray(int ROIIndex,
                                 int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeDashArray property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeDashArray property.
  - getRectangleStrokeWidth
```
public Length getRectangleStrokeWidth(int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the StrokeWidth property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the StrokeWidth property.
  - getRectangleText
```
public String getRectangleText(int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Text property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Text property.
  - getRectangleTheC
```
public NonNegativeInteger getRectangleTheC(int ROIIndex,
                                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheC property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheC property.
  - getRectangleTheT
```
public NonNegativeInteger getRectangleTheT(int ROIIndex,
                                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheT property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheT property.
  - getRectangleTheZ
```
public NonNegativeInteger getRectangleTheZ(int ROIIndex,
                                  int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the TheZ property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the TheZ property.
  - getRectangleTransform
```
public AffineTransform getRectangleTransform(int ROIIndex,
                                    int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transform property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Transform property.
  - getRectangleVisible
```
public Boolean getRectangleVisible(int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Visible property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Visible property.
  - getRectangleHeight
```
public Double getRectangleHeight(int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Height property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Height property.
  - getRectangleWidth
```
public Double getRectangleWidth(int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Width property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Width property.
  - getRectangleX
```
public Double getRectangleX(int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the X property.
  - getRectangleY
```
public Double getRectangleY(int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y property of Rectangle.
    
    Parameters:
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    
    Returns:
    the Y property.
  - getRightsRightsHeld
```
public String getRightsRightsHeld()
```
    Description copied from interface: MetadataRetrieve
    
    Get the RightsHeld property of Rights.
    
    Returns:
    the RightsHeld property.
  - getRightsRightsHolder
```
public String getRightsRightsHolder()
```
    Description copied from interface: MetadataRetrieve
    
    Get the RightsHolder property of Rights.
    
    Returns:
    the RightsHolder property.
  - getScreenAnnotationRef
```
public String getScreenAnnotationRef(int screenIndex,
                            int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getScreenDescription
```
public String getScreenDescription(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the Description property.
  - getScreenID
```
public String getScreenID(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the ID property.
  - getScreenName
```
public String getScreenName(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the Name property.
  - getScreenPlateRef
```
public String getScreenPlateRef(int screenIndex,
                       int plateRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PlateRef property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    plateRefIndex - PlateRef index (unused).
    
    Returns:
    the PlateRef property.
  - getScreenProtocolDescription
```
public String getScreenProtocolDescription(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ProtocolDescription property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the ProtocolDescription property.
  - getScreenProtocolIdentifier
```
public String getScreenProtocolIdentifier(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ProtocolIdentifier property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the ProtocolIdentifier property.
  - getScreenReagentSetDescription
```
public String getScreenReagentSetDescription(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ReagentSetDescription property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the ReagentSetDescription property.
  - getScreenReagentSetIdentifier
```
public String getScreenReagentSetIdentifier(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ReagentSetIdentifier property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the ReagentSetIdentifier property.
  - getScreenType
```
public String getScreenType(int screenIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Screen.
    
    Parameters:
    screenIndex - the Screen index.
    
    Returns:
    the Type property.
  - getStageLabelName
```
public String getStageLabelName(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Name property of StageLabel.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Name property.
  - getStageLabelX
```
public Length getStageLabelX(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the X property of StageLabel.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the X property.
  - getStageLabelY
```
public Length getStageLabelY(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Y property of StageLabel.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Y property.
  - getStageLabelZ
```
public Length getStageLabelZ(int imageIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Z property of StageLabel.
    
    Parameters:
    imageIndex - the Image index.
    
    Returns:
    the Z property.
  - getTagAnnotationAnnotationRef
```
public String getTagAnnotationAnnotationRef(int tagAnnotationIndex,
                                   int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of TagAnnotation.
    
    Parameters:
    tagAnnotationIndex - the TagAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getTagAnnotationAnnotator
```
public String getTagAnnotationAnnotator(int tagAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of TagAnnotation.
    
    Parameters:
    tagAnnotationIndex - the TagAnnotation index.
    
    Returns:
    the Annotator property.
  - getTagAnnotationDescription
```
public String getTagAnnotationDescription(int tagAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of TagAnnotation.
    
    Parameters:
    tagAnnotationIndex - the TagAnnotation index.
    
    Returns:
    the Description property.
  - getTagAnnotationID
```
public String getTagAnnotationID(int tagAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of TagAnnotation.
    
    Parameters:
    tagAnnotationIndex - the TagAnnotation index.
    
    Returns:
    the ID property.
  - getTagAnnotationNamespace
```
public String getTagAnnotationNamespace(int tagAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of TagAnnotation.
    
    Parameters:
    tagAnnotationIndex - the TagAnnotation index.
    
    Returns:
    the Namespace property.
  - getTagAnnotationValue
```
public String getTagAnnotationValue(int tagAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of TagAnnotation.
    
    Parameters:
    tagAnnotationIndex - the TagAnnotation index.
    
    Returns:
    the Value property.
  - getTermAnnotationAnnotationRef
```
public String getTermAnnotationAnnotationRef(int termAnnotationIndex,
                                    int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of TermAnnotation.
    
    Parameters:
    termAnnotationIndex - the TermAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getTermAnnotationAnnotator
```
public String getTermAnnotationAnnotator(int termAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of TermAnnotation.
    
    Parameters:
    termAnnotationIndex - the TermAnnotation index.
    
    Returns:
    the Annotator property.
  - getTermAnnotationDescription
```
public String getTermAnnotationDescription(int termAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of TermAnnotation.
    
    Parameters:
    termAnnotationIndex - the TermAnnotation index.
    
    Returns:
    the Description property.
  - getTermAnnotationID
```
public String getTermAnnotationID(int termAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of TermAnnotation.
    
    Parameters:
    termAnnotationIndex - the TermAnnotation index.
    
    Returns:
    the ID property.
  - getTermAnnotationNamespace
```
public String getTermAnnotationNamespace(int termAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of TermAnnotation.
    
    Parameters:
    termAnnotationIndex - the TermAnnotation index.
    
    Returns:
    the Namespace property.
  - getTermAnnotationValue
```
public String getTermAnnotationValue(int termAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of TermAnnotation.
    
    Parameters:
    termAnnotationIndex - the TermAnnotation index.
    
    Returns:
    the Value property.
  - getTiffDataFirstC
```
public NonNegativeInteger getTiffDataFirstC(int imageIndex,
                                   int tiffDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FirstC property of TiffData.
    
    Parameters:
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
    
    Returns:
    the FirstC property.
  - getTiffDataFirstT
```
public NonNegativeInteger getTiffDataFirstT(int imageIndex,
                                   int tiffDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FirstT property of TiffData.
    
    Parameters:
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
    
    Returns:
    the FirstT property.
  - getTiffDataFirstZ
```
public NonNegativeInteger getTiffDataFirstZ(int imageIndex,
                                   int tiffDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FirstZ property of TiffData.
    
    Parameters:
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
    
    Returns:
    the FirstZ property.
  - getTiffDataIFD
```
public NonNegativeInteger getTiffDataIFD(int imageIndex,
                                int tiffDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the IFD property of TiffData.
    
    Parameters:
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
    
    Returns:
    the IFD property.
  - getTiffDataPlaneCount
```
public NonNegativeInteger getTiffDataPlaneCount(int imageIndex,
                                       int tiffDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PlaneCount property of TiffData.
    
    Parameters:
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
    
    Returns:
    the PlaneCount property.
  - getTimestampAnnotationAnnotationRef
```
public String getTimestampAnnotationAnnotationRef(int timestampAnnotationIndex,
                                         int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of TimestampAnnotation.
    
    Parameters:
    timestampAnnotationIndex - the TimestampAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getTimestampAnnotationAnnotator
```
public String getTimestampAnnotationAnnotator(int timestampAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of TimestampAnnotation.
    
    Parameters:
    timestampAnnotationIndex - the TimestampAnnotation index.
    
    Returns:
    the Annotator property.
  - getTimestampAnnotationDescription
```
public String getTimestampAnnotationDescription(int timestampAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of TimestampAnnotation.
    
    Parameters:
    timestampAnnotationIndex - the TimestampAnnotation index.
    
    Returns:
    the Description property.
  - getTimestampAnnotationID
```
public String getTimestampAnnotationID(int timestampAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of TimestampAnnotation.
    
    Parameters:
    timestampAnnotationIndex - the TimestampAnnotation index.
    
    Returns:
    the ID property.
  - getTimestampAnnotationNamespace
```
public String getTimestampAnnotationNamespace(int timestampAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of TimestampAnnotation.
    
    Parameters:
    timestampAnnotationIndex - the TimestampAnnotation index.
    
    Returns:
    the Namespace property.
  - getTimestampAnnotationValue
```
public Timestamp getTimestampAnnotationValue(int timestampAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of TimestampAnnotation.
    
    Parameters:
    timestampAnnotationIndex - the TimestampAnnotation index.
    
    Returns:
    the Value property.
  - getTransmittanceRangeCutIn
```
public Length getTransmittanceRangeCutIn(int instrumentIndex,
                                int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the CutIn property of TransmittanceRange.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the CutIn property.
  - getTransmittanceRangeCutInTolerance
```
public Length getTransmittanceRangeCutInTolerance(int instrumentIndex,
                                         int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the CutInTolerance property of TransmittanceRange.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the CutInTolerance property.
  - getTransmittanceRangeCutOut
```
public Length getTransmittanceRangeCutOut(int instrumentIndex,
                                 int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the CutOut property of TransmittanceRange.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the CutOut property.
  - getTransmittanceRangeCutOutTolerance
```
public Length getTransmittanceRangeCutOutTolerance(int instrumentIndex,
                                          int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the CutOutTolerance property of TransmittanceRange.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the CutOutTolerance property.
  - getTransmittanceRangeTransmittance
```
public PercentFraction getTransmittanceRangeTransmittance(int instrumentIndex,
                                                 int filterIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Transmittance property of TransmittanceRange.
    
    Parameters:
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    
    Returns:
    the Transmittance property.
  - getUUIDFileName
```
public String getUUIDFileName(int imageIndex,
                     int tiffDataIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the FileName property of UUID.
    
    Parameters:
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
    
    Returns:
    the FileName property.
  - getWellAnnotationRef
```
public String getWellAnnotationRef(int plateIndex,
                          int wellIndex,
                          int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getWellColor
```
public Color getWellColor(int plateIndex,
                 int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Color property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the Color property.
  - getWellColumn
```
public NonNegativeInteger getWellColumn(int plateIndex,
                               int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Column property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the Column property.
  - getWellExternalDescription
```
public String getWellExternalDescription(int plateIndex,
                                int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExternalDescription property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the ExternalDescription property.
  - getWellExternalIdentifier
```
public String getWellExternalIdentifier(int plateIndex,
                               int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ExternalIdentifier property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the ExternalIdentifier property.
  - getWellID
```
public String getWellID(int plateIndex,
               int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the ID property.
  - getWellReagentRef
```
public String getWellReagentRef(int plateIndex,
                       int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ReagentRef property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the ReagentRef property.
  - getWellRow
```
public NonNegativeInteger getWellRow(int plateIndex,
                            int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Row property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the Row property.
  - getWellType
```
public String getWellType(int plateIndex,
                 int wellIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Type property of Well.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    
    Returns:
    the Type property.
  - getWellSampleID
```
public String getWellSampleID(int plateIndex,
                     int wellIndex,
                     int wellSampleIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of WellSample.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
    
    Returns:
    the ID property.
  - getWellSampleImageRef
```
public String getWellSampleImageRef(int plateIndex,
                           int wellIndex,
                           int wellSampleIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ImageRef property of WellSample.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
    
    Returns:
    the ImageRef property.
  - getWellSampleIndex
```
public NonNegativeInteger getWellSampleIndex(int plateIndex,
                                    int wellIndex,
                                    int wellSampleIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Index property of WellSample.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
    
    Returns:
    the Index property.
  - getWellSamplePositionX
```
public Length getWellSamplePositionX(int plateIndex,
                            int wellIndex,
                            int wellSampleIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PositionX property of WellSample.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
    
    Returns:
    the PositionX property.
  - getWellSamplePositionY
```
public Length getWellSamplePositionY(int plateIndex,
                            int wellIndex,
                            int wellSampleIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the PositionY property of WellSample.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
    
    Returns:
    the PositionY property.
  - getWellSampleTimepoint
```
public Timestamp getWellSampleTimepoint(int plateIndex,
                               int wellIndex,
                               int wellSampleIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Timepoint property of WellSample.
    
    Parameters:
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
    
    Returns:
    the Timepoint property.
  - getXMLAnnotationAnnotationRef
```
public String getXMLAnnotationAnnotationRef(int XMLAnnotationIndex,
                                   int annotationRefIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the AnnotationRef property of XMLAnnotation.
    
    Parameters:
    XMLAnnotationIndex - the XMLAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
    
    Returns:
    the AnnotationRef property.
  - getXMLAnnotationAnnotator
```
public String getXMLAnnotationAnnotator(int XMLAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Annotator property of XMLAnnotation.
    
    Parameters:
    XMLAnnotationIndex - the XMLAnnotation index.
    
    Returns:
    the Annotator property.
  - getXMLAnnotationDescription
```
public String getXMLAnnotationDescription(int XMLAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Description property of XMLAnnotation.
    
    Parameters:
    XMLAnnotationIndex - the XMLAnnotation index.
    
    Returns:
    the Description property.
  - getXMLAnnotationID
```
public String getXMLAnnotationID(int XMLAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the ID property of XMLAnnotation.
    
    Parameters:
    XMLAnnotationIndex - the XMLAnnotation index.
    
    Returns:
    the ID property.
  - getXMLAnnotationNamespace
```
public String getXMLAnnotationNamespace(int XMLAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Namespace property of XMLAnnotation.
    
    Parameters:
    XMLAnnotationIndex - the XMLAnnotation index.
    
    Returns:
    the Namespace property.
  - getXMLAnnotationValue
```
public String getXMLAnnotationValue(int XMLAnnotationIndex)
```
    Description copied from interface: MetadataRetrieve
    
    Get the Value property of XMLAnnotation.
    
    Parameters:
    XMLAnnotationIndex - the XMLAnnotation index.
    
    Returns:
    the Value property.
  - setPixelsBinDataBigEndian
```
public void setPixelsBinDataBigEndian(Boolean bigEndian,
                             int imageIndex,
                             int binDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the BigEndian property of Pixels.
    
    Parameters:
    bigEndian - true if big endian, or false if little endian.
    imageIndex - the Image index.
    binDataIndex - BinData index (unused).
  - setMaskBinData
```
public void setMaskBinData(byte[] binData,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the BinData property of Mask.
    
    Parameters:
    binData - the BinData to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setUUID
```
public void setUUID(String uuid)
```
    Sets the UUID associated with this collection of metadata.
    
    Parameters:
    uuid - the UUID to set.
  - setMapAnnotationValue
```
public void setMapAnnotationValue(List<MapPair> value,
                         int mapAnnotationIndex)
```
    Sets the Map value associated with this annotation
    
    Parameters:
    value - the MapAnnotation values to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setGenericExcitationSourceMap
```
public void setGenericExcitationSourceMap(List<MapPair> map,
                                 int instrumentIndex,
                                 int lightSourceIndex)
```
    Sets the Map value associated with this generic light source
    
    Parameters:
    map - the MapAnnotation values to set.
    instrumentIndex - the Instrument index.
  - setImagingEnvironmentMap
```
public void setImagingEnvironmentMap(List<MapPair> map,
                            int imageIndex)
```
    Sets the Map value associated with this imaging environment
    
    Parameters:
    map - the MapAnnotation values to set.
    imageIndex - the Image index.
  - setArcAnnotationRef
```
public void setArcAnnotationRef(String annotation,
                       int instrumentIndex,
                       int lightSourceIndex,
                       int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Arc.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setArcID
```
public void setArcID(String id,
            int instrumentIndex,
            int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Arc.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcLotNumber
```
public void setArcLotNumber(String lotNumber,
                   int instrumentIndex,
                   int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Arc.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcManufacturer
```
public void setArcManufacturer(String manufacturer,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Arc.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcModel
```
public void setArcModel(String model,
               int instrumentIndex,
               int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Arc.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcPower
```
public void setArcPower(Power power,
               int instrumentIndex,
               int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Power property of Arc.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcSerialNumber
```
public void setArcSerialNumber(String serialNumber,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Arc.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcType
```
public void setArcType(ArcType type,
              int instrumentIndex,
              int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Arc.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setBinaryFileFileName
```
public void setBinaryFileFileName(String fileName,
                         int fileAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FileName property of BinaryFile.
    
    Parameters:
    fileName - FileName to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setBinaryFileMIMEType
```
public void setBinaryFileMIMEType(String mimeType,
                         int fileAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MIMEType property of BinaryFile.
    
    Parameters:
    mimeType - MIMEType to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setBinaryFileSize
```
public void setBinaryFileSize(NonNegativeLong size,
                     int fileAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Size property of BinaryFile.
    
    Parameters:
    size - Size to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setBinaryOnlyMetadataFile
```
public void setBinaryOnlyMetadataFile(String metadataFile)
```
    Description copied from interface: MetadataStore
    
    Set the MetadataFile property of BinaryOnly.
    
    Parameters:
    metadataFile - MetadataFile to set.
  - setBinaryOnlyUUID
```
public void setBinaryOnlyUUID(String uuid)
```
    Description copied from interface: MetadataStore
    
    Set the UUID property of BinaryOnly.
    
    Parameters:
    uuid - UUID to set.
  - setBooleanAnnotationAnnotationRef
```
public void setBooleanAnnotationAnnotationRef(String annotation,
                                     int booleanAnnotationIndex,
                                     int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of BooleanAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setBooleanAnnotationAnnotator
```
public void setBooleanAnnotationAnnotator(String annotator,
                                 int booleanAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of BooleanAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationDescription
```
public void setBooleanAnnotationDescription(String description,
                                   int booleanAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of BooleanAnnotation.
    
    Parameters:
    description - Description to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationID
```
public void setBooleanAnnotationID(String id,
                          int booleanAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of BooleanAnnotation.
    
    Parameters:
    id - ID to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationNamespace
```
public void setBooleanAnnotationNamespace(String namespace,
                                 int booleanAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of BooleanAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationValue
```
public void setBooleanAnnotationValue(Boolean value,
                             int booleanAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of BooleanAnnotation.
    
    Parameters:
    value - Value to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setChannelAcquisitionMode
```
public void setChannelAcquisitionMode(AcquisitionMode acquisitionMode,
                             int imageIndex,
                             int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AcquisitionMode property of Channel.
    
    Parameters:
    acquisitionMode - AcquisitionMode to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelAnnotationRef
```
public void setChannelAnnotationRef(String annotation,
                           int imageIndex,
                           int channelIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Channel.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    annotationRefIndex - AnnotationRef index (unused).
  - setChannelColor
```
public void setChannelColor(Color color,
                   int imageIndex,
                   int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Color property of Channel.
    
    Parameters:
    color - Color to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelContrastMethod
```
public void setChannelContrastMethod(ContrastMethod contrastMethod,
                            int imageIndex,
                            int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ContrastMethod property of Channel.
    
    Parameters:
    contrastMethod - ContrastMethod to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelEmissionWavelength
```
public void setChannelEmissionWavelength(Length emissionWavelength,
                                int imageIndex,
                                int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the EmissionWavelength property of Channel.
    
    Parameters:
    emissionWavelength - EmissionWavelength to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelExcitationWavelength
```
public void setChannelExcitationWavelength(Length excitationWavelength,
                                  int imageIndex,
                                  int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExcitationWavelength property of Channel.
    
    Parameters:
    excitationWavelength - ExcitationWavelength to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelFilterSetRef
```
public void setChannelFilterSetRef(String filterSet,
                          int imageIndex,
                          int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FilterSetRef property of Channel.
    
    Parameters:
    filterSet - FilterSetRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelFluor
```
public void setChannelFluor(String fluor,
                   int imageIndex,
                   int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Fluor property of Channel.
    
    Parameters:
    fluor - Fluor to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelID
```
public void setChannelID(String id,
                int imageIndex,
                int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Channel.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelIlluminationType
```
public void setChannelIlluminationType(IlluminationType illuminationType,
                              int imageIndex,
                              int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the IlluminationType property of Channel.
    
    Parameters:
    illuminationType - IlluminationType to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelNDFilter
```
public void setChannelNDFilter(Double ndFilter,
                      int imageIndex,
                      int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the NDFilter property of Channel.
    
    Parameters:
    ndFilter - NDFilter to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelName
```
public void setChannelName(String name,
                  int imageIndex,
                  int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of Channel.
    
    Parameters:
    name - Name to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelPinholeSize
```
public void setChannelPinholeSize(Length pinholeSize,
                         int imageIndex,
                         int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PinholeSize property of Channel.
    
    Parameters:
    pinholeSize - PinholeSize to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelPockelCellSetting
```
public void setChannelPockelCellSetting(Integer pockelCellSetting,
                               int imageIndex,
                               int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PockelCellSetting property of Channel.
    
    Parameters:
    pockelCellSetting - PockelCellSetting to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelSamplesPerPixel
```
public void setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
                             int imageIndex,
                             int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SamplesPerPixel property of Channel.
    
    Parameters:
    samplesPerPixel - SamplesPerPixel to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setCommentAnnotationAnnotationRef
```
public void setCommentAnnotationAnnotationRef(String annotation,
                                     int commentAnnotationIndex,
                                     int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of CommentAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    commentAnnotationIndex - the CommentAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setCommentAnnotationAnnotator
```
public void setCommentAnnotationAnnotator(String annotator,
                                 int commentAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of CommentAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationDescription
```
public void setCommentAnnotationDescription(String description,
                                   int commentAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of CommentAnnotation.
    
    Parameters:
    description - Description to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationID
```
public void setCommentAnnotationID(String id,
                          int commentAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of CommentAnnotation.
    
    Parameters:
    id - ID to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationNamespace
```
public void setCommentAnnotationNamespace(String namespace,
                                 int commentAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of CommentAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationValue
```
public void setCommentAnnotationValue(String value,
                             int commentAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of CommentAnnotation.
    
    Parameters:
    value - Value to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setDatasetAnnotationRef
```
public void setDatasetAnnotationRef(String annotation,
                           int datasetIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Dataset.
    
    Parameters:
    annotation - AnnotationRef to set.
    datasetIndex - the Dataset index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDatasetDescription
```
public void setDatasetDescription(String description,
                         int datasetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of Dataset.
    
    Parameters:
    description - Description to set.
    datasetIndex - the Dataset index.
  - setDatasetExperimenterGroupRef
```
public void setDatasetExperimenterGroupRef(String experimenterGroup,
                                  int datasetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterGroupRef property of Dataset.
    
    Parameters:
    experimenterGroup - ExperimenterGroupRef to set.
    datasetIndex - the Dataset index.
  - setDatasetExperimenterRef
```
public void setDatasetExperimenterRef(String experimenter,
                             int datasetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterRef property of Dataset.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    datasetIndex - the Dataset index.
  - setDatasetID
```
public void setDatasetID(String id,
                int datasetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Dataset.
    
    Parameters:
    id - ID to set.
    datasetIndex - the Dataset index.
  - setDatasetImageRef
```
public void setDatasetImageRef(String image,
                      int datasetIndex,
                      int imageRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ImageRef property of Dataset.
    
    Parameters:
    image - ImageRef to set.
    datasetIndex - the Dataset index.
    imageRefIndex - ImageRef index (unused).
  - setDatasetName
```
public void setDatasetName(String name,
                  int datasetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of Dataset.
    
    Parameters:
    name - Name to set.
    datasetIndex - the Dataset index.
  - setDetectorAmplificationGain
```
public void setDetectorAmplificationGain(Double amplificationGain,
                                int instrumentIndex,
                                int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AmplificationGain property of Detector.
    
    Parameters:
    amplificationGain - AmplificationGain to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorAnnotationRef
```
public void setDetectorAnnotationRef(String annotation,
                            int instrumentIndex,
                            int detectorIndex,
                            int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Detector.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDetectorGain
```
public void setDetectorGain(Double gain,
                   int instrumentIndex,
                   int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Gain property of Detector.
    
    Parameters:
    gain - Gain to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorID
```
public void setDetectorID(String id,
                 int instrumentIndex,
                 int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Detector.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorLotNumber
```
public void setDetectorLotNumber(String lotNumber,
                        int instrumentIndex,
                        int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Detector.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorManufacturer
```
public void setDetectorManufacturer(String manufacturer,
                           int instrumentIndex,
                           int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Detector.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorModel
```
public void setDetectorModel(String model,
                    int instrumentIndex,
                    int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Detector.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorOffset
```
public void setDetectorOffset(Double offset,
                     int instrumentIndex,
                     int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Offset property of Detector.
    
    Parameters:
    offset - Offset to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorSerialNumber
```
public void setDetectorSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Detector.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorType
```
public void setDetectorType(DetectorType type,
                   int instrumentIndex,
                   int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Detector.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorVoltage
```
public void setDetectorVoltage(ElectricPotential voltage,
                      int instrumentIndex,
                      int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Voltage property of Detector.
    
    Parameters:
    voltage - Voltage to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorZoom
```
public void setDetectorZoom(Double zoom,
                   int instrumentIndex,
                   int detectorIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Zoom property of Detector.
    
    Parameters:
    zoom - Zoom to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorSettingsBinning
```
public void setDetectorSettingsBinning(Binning binning,
                              int imageIndex,
                              int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Binning property of DetectorSettings.
    
    Parameters:
    binning - Binning to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsGain
```
public void setDetectorSettingsGain(Double gain,
                           int imageIndex,
                           int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Gain property of DetectorSettings.
    
    Parameters:
    gain - Gain to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsID
```
public void setDetectorSettingsID(String id,
                         int imageIndex,
                         int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of DetectorSettings.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsIntegration
```
public void setDetectorSettingsIntegration(PositiveInteger integration,
                                  int imageIndex,
                                  int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Integration property of DetectorSettings.
    
    Parameters:
    integration - Integration to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsOffset
```
public void setDetectorSettingsOffset(Double offset,
                             int imageIndex,
                             int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Offset property of DetectorSettings.
    
    Parameters:
    offset - Offset to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsReadOutRate
```
public void setDetectorSettingsReadOutRate(Frequency readOutRate,
                                  int imageIndex,
                                  int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ReadOutRate property of DetectorSettings.
    
    Parameters:
    readOutRate - ReadOutRate to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsVoltage
```
public void setDetectorSettingsVoltage(ElectricPotential voltage,
                              int imageIndex,
                              int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Voltage property of DetectorSettings.
    
    Parameters:
    voltage - Voltage to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsZoom
```
public void setDetectorSettingsZoom(Double zoom,
                           int imageIndex,
                           int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Zoom property of DetectorSettings.
    
    Parameters:
    zoom - Zoom to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDichroicAnnotationRef
```
public void setDichroicAnnotationRef(String annotation,
                            int instrumentIndex,
                            int dichroicIndex,
                            int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Dichroic.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDichroicID
```
public void setDichroicID(String id,
                 int instrumentIndex,
                 int dichroicIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Dichroic.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicLotNumber
```
public void setDichroicLotNumber(String lotNumber,
                        int instrumentIndex,
                        int dichroicIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Dichroic.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicManufacturer
```
public void setDichroicManufacturer(String manufacturer,
                           int instrumentIndex,
                           int dichroicIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Dichroic.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicModel
```
public void setDichroicModel(String model,
                    int instrumentIndex,
                    int dichroicIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Dichroic.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicSerialNumber
```
public void setDichroicSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int dichroicIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Dichroic.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDoubleAnnotationAnnotationRef
```
public void setDoubleAnnotationAnnotationRef(String annotation,
                                    int doubleAnnotationIndex,
                                    int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of DoubleAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDoubleAnnotationAnnotator
```
public void setDoubleAnnotationAnnotator(String annotator,
                                int doubleAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of DoubleAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationDescription
```
public void setDoubleAnnotationDescription(String description,
                                  int doubleAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of DoubleAnnotation.
    
    Parameters:
    description - Description to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationID
```
public void setDoubleAnnotationID(String id,
                         int doubleAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of DoubleAnnotation.
    
    Parameters:
    id - ID to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationNamespace
```
public void setDoubleAnnotationNamespace(String namespace,
                                int doubleAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of DoubleAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationValue
```
public void setDoubleAnnotationValue(Double value,
                            int doubleAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of DoubleAnnotation.
    
    Parameters:
    value - Value to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setEllipseAnnotationRef
```
public void setEllipseAnnotationRef(String annotation,
                           int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Ellipse.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setEllipseFillColor
```
public void setEllipseFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Ellipse.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFillRule
```
public void setEllipseFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Ellipse.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFontFamily
```
public void setEllipseFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Ellipse.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFontSize
```
public void setEllipseFontSize(Length fontSize,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Ellipse.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFontStyle
```
public void setEllipseFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Ellipse.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseID
```
public void setEllipseID(String id,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Ellipse.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseLineCap
```
public void setEllipseLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Ellipse.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseLocked
```
public void setEllipseLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Ellipse.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseStrokeColor
```
public void setEllipseStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Ellipse.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseStrokeDashArray
```
public void setEllipseStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Ellipse.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseStrokeWidth
```
public void setEllipseStrokeWidth(Length strokeWidth,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Ellipse.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseText
```
public void setEllipseText(String text,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Ellipse.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTheC
```
public void setEllipseTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Ellipse.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTheT
```
public void setEllipseTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Ellipse.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTheZ
```
public void setEllipseTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Ellipse.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTransform
```
public void setEllipseTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Ellipse.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseVisible
```
public void setEllipseVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Ellipse.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseRadiusX
```
public void setEllipseRadiusX(Double radiusX,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the RadiusX property of Ellipse.
    
    Parameters:
    radiusX - RadiusX to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseRadiusY
```
public void setEllipseRadiusY(Double radiusY,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the RadiusY property of Ellipse.
    
    Parameters:
    radiusY - RadiusY to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseX
```
public void setEllipseX(Double x,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X property of Ellipse.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseY
```
public void setEllipseY(Double y,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y property of Ellipse.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setExperimentDescription
```
public void setExperimentDescription(String description,
                            int experimentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of Experiment.
    
    Parameters:
    description - Description to set.
    experimentIndex - the Experiment index.
  - setExperimentExperimenterRef
```
public void setExperimentExperimenterRef(String experimenter,
                                int experimentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterRef property of Experiment.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    experimentIndex - the Experiment index.
  - setExperimentID
```
public void setExperimentID(String id,
                   int experimentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Experiment.
    
    Parameters:
    id - ID to set.
    experimentIndex - the Experiment index.
  - setExperimentType
```
public void setExperimentType(ExperimentType type,
                     int experimentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Experiment.
    
    Parameters:
    type - Type to set.
    experimentIndex - the Experiment index.
  - setExperimenterAnnotationRef
```
public void setExperimenterAnnotationRef(String annotation,
                                int experimenterIndex,
                                int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Experimenter.
    
    Parameters:
    annotation - AnnotationRef to set.
    experimenterIndex - the Experimenter index.
    annotationRefIndex - AnnotationRef index (unused).
  - setExperimenterEmail
```
public void setExperimenterEmail(String email,
                        int experimenterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Email property of Experimenter.
    
    Parameters:
    email - Email to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterFirstName
```
public void setExperimenterFirstName(String firstName,
                            int experimenterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FirstName property of Experimenter.
    
    Parameters:
    firstName - FirstName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterID
```
public void setExperimenterID(String id,
                     int experimenterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Experimenter.
    
    Parameters:
    id - ID to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterInstitution
```
public void setExperimenterInstitution(String institution,
                              int experimenterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Institution property of Experimenter.
    
    Parameters:
    institution - Institution to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterLastName
```
public void setExperimenterLastName(String lastName,
                           int experimenterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LastName property of Experimenter.
    
    Parameters:
    lastName - LastName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterMiddleName
```
public void setExperimenterMiddleName(String middleName,
                             int experimenterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MiddleName property of Experimenter.
    
    Parameters:
    middleName - MiddleName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterUserName
```
public void setExperimenterUserName(String userName,
                           int experimenterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the UserName property of Experimenter.
    
    Parameters:
    userName - UserName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterGroupAnnotationRef
```
public void setExperimenterGroupAnnotationRef(String annotation,
                                     int experimenterGroupIndex,
                                     int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of ExperimenterGroup.
    
    Parameters:
    annotation - AnnotationRef to set.
    experimenterGroupIndex - the ExperimenterGroup index.
    annotationRefIndex - AnnotationRef index (unused).
  - setExperimenterGroupDescription
```
public void setExperimenterGroupDescription(String description,
                                   int experimenterGroupIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of ExperimenterGroup.
    
    Parameters:
    description - Description to set.
    experimenterGroupIndex - the ExperimenterGroup index.
  - setExperimenterGroupExperimenterRef
```
public void setExperimenterGroupExperimenterRef(String experimenter,
                                       int experimenterGroupIndex,
                                       int experimenterRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterRef property of ExperimenterGroup.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    experimenterGroupIndex - the ExperimenterGroup index.
    experimenterRefIndex - ExperimenterRef index (unused).
  - setExperimenterGroupID
```
public void setExperimenterGroupID(String id,
                          int experimenterGroupIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of ExperimenterGroup.
    
    Parameters:
    id - ID to set.
    experimenterGroupIndex - the ExperimenterGroup index.
  - setExperimenterGroupLeader
```
public void setExperimenterGroupLeader(String leader,
                              int experimenterGroupIndex,
                              int leaderIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Leader property of ExperimenterGroup.
    
    Parameters:
    leader - Leader to set.
    experimenterGroupIndex - the ExperimenterGroup index.
    leaderIndex - Leader index (unused).
  - setExperimenterGroupName
```
public void setExperimenterGroupName(String name,
                            int experimenterGroupIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of ExperimenterGroup.
    
    Parameters:
    name - Name to set.
    experimenterGroupIndex - the ExperimenterGroup index.
  - setFilamentAnnotationRef
```
public void setFilamentAnnotationRef(String annotation,
                            int instrumentIndex,
                            int lightSourceIndex,
                            int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Filament.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setFilamentID
```
public void setFilamentID(String id,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Filament.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentLotNumber
```
public void setFilamentLotNumber(String lotNumber,
                        int instrumentIndex,
                        int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Filament.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentManufacturer
```
public void setFilamentManufacturer(String manufacturer,
                           int instrumentIndex,
                           int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Filament.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentModel
```
public void setFilamentModel(String model,
                    int instrumentIndex,
                    int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Filament.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentPower
```
public void setFilamentPower(Power power,
                    int instrumentIndex,
                    int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Power property of Filament.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentSerialNumber
```
public void setFilamentSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Filament.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentType
```
public void setFilamentType(FilamentType type,
                   int instrumentIndex,
                   int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Filament.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFileAnnotationAnnotationRef
```
public void setFileAnnotationAnnotationRef(String annotation,
                                  int fileAnnotationIndex,
                                  int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of FileAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    fileAnnotationIndex - the FileAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setFileAnnotationAnnotator
```
public void setFileAnnotationAnnotator(String annotator,
                              int fileAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of FileAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFileAnnotationDescription
```
public void setFileAnnotationDescription(String description,
                                int fileAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of FileAnnotation.
    
    Parameters:
    description - Description to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFileAnnotationID
```
public void setFileAnnotationID(String id,
                       int fileAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of FileAnnotation.
    
    Parameters:
    id - ID to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFileAnnotationNamespace
```
public void setFileAnnotationNamespace(String namespace,
                              int fileAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of FileAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFilterAnnotationRef
```
public void setFilterAnnotationRef(String annotation,
                          int instrumentIndex,
                          int filterIndex,
                          int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Filter.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    annotationRefIndex - AnnotationRef index (unused).
  - setFilterFilterWheel
```
public void setFilterFilterWheel(String filterWheel,
                        int instrumentIndex,
                        int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FilterWheel property of Filter.
    
    Parameters:
    filterWheel - FilterWheel to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterID
```
public void setFilterID(String id,
               int instrumentIndex,
               int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Filter.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterLotNumber
```
public void setFilterLotNumber(String lotNumber,
                      int instrumentIndex,
                      int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Filter.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterManufacturer
```
public void setFilterManufacturer(String manufacturer,
                         int instrumentIndex,
                         int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Filter.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterModel
```
public void setFilterModel(String model,
                  int instrumentIndex,
                  int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Filter.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterSerialNumber
```
public void setFilterSerialNumber(String serialNumber,
                         int instrumentIndex,
                         int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Filter.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterType
```
public void setFilterType(FilterType type,
                 int instrumentIndex,
                 int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Filter.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterSetDichroicRef
```
public void setFilterSetDichroicRef(String dichroic,
                           int instrumentIndex,
                           int filterSetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the DichroicRef property of FilterSet.
    
    Parameters:
    dichroic - DichroicRef to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetEmissionFilterRef
```
public void setFilterSetEmissionFilterRef(String emissionFilter,
                                 int instrumentIndex,
                                 int filterSetIndex,
                                 int emissionFilterRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the EmissionFilterRef property of FilterSet.
    
    Parameters:
    emissionFilter - EmissionFilterRef to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    emissionFilterRefIndex - EmissionFilterRef index (unused).
  - setFilterSetExcitationFilterRef
```
public void setFilterSetExcitationFilterRef(String excitationFilter,
                                   int instrumentIndex,
                                   int filterSetIndex,
                                   int excitationFilterRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExcitationFilterRef property of FilterSet.
    
    Parameters:
    excitationFilter - ExcitationFilterRef to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    excitationFilterRefIndex - ExcitationFilterRef index (unused).
  - setFilterSetID
```
public void setFilterSetID(String id,
                  int instrumentIndex,
                  int filterSetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of FilterSet.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetLotNumber
```
public void setFilterSetLotNumber(String lotNumber,
                         int instrumentIndex,
                         int filterSetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of FilterSet.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetManufacturer
```
public void setFilterSetManufacturer(String manufacturer,
                            int instrumentIndex,
                            int filterSetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of FilterSet.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetModel
```
public void setFilterSetModel(String model,
                     int instrumentIndex,
                     int filterSetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of FilterSet.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetSerialNumber
```
public void setFilterSetSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int filterSetIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of FilterSet.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setGenericExcitationSourceAnnotationRef
```
public void setGenericExcitationSourceAnnotationRef(String annotation,
                                           int instrumentIndex,
                                           int lightSourceIndex,
                                           int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of GenericExcitationSource.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setGenericExcitationSourceID
```
public void setGenericExcitationSourceID(String id,
                                int instrumentIndex,
                                int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of GenericExcitationSource.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceLotNumber
```
public void setGenericExcitationSourceLotNumber(String lotNumber,
                                       int instrumentIndex,
                                       int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of GenericExcitationSource.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceManufacturer
```
public void setGenericExcitationSourceManufacturer(String manufacturer,
                                          int instrumentIndex,
                                          int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of GenericExcitationSource.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceModel
```
public void setGenericExcitationSourceModel(String model,
                                   int instrumentIndex,
                                   int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of GenericExcitationSource.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourcePower
```
public void setGenericExcitationSourcePower(Power power,
                                   int instrumentIndex,
                                   int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Power property of GenericExcitationSource.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceSerialNumber
```
public void setGenericExcitationSourceSerialNumber(String serialNumber,
                                          int instrumentIndex,
                                          int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of GenericExcitationSource.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setImageAcquisitionDate
```
public void setImageAcquisitionDate(Timestamp acquisitionDate,
                           int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AcquisitionDate property of Image.
    
    Parameters:
    acquisitionDate - AcquisitionDate to set.
    imageIndex - the Image index.
  - setImageAnnotationRef
```
public void setImageAnnotationRef(String annotation,
                         int imageIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Image.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    annotationRefIndex - AnnotationRef index (unused).
  - setImageDescription
```
public void setImageDescription(String description,
                       int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of Image.
    
    Parameters:
    description - Description to set.
    imageIndex - the Image index.
  - setImageExperimentRef
```
public void setImageExperimentRef(String experiment,
                         int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimentRef property of Image.
    
    Parameters:
    experiment - ExperimentRef to set.
    imageIndex - the Image index.
  - setImageExperimenterGroupRef
```
public void setImageExperimenterGroupRef(String experimenterGroup,
                                int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterGroupRef property of Image.
    
    Parameters:
    experimenterGroup - ExperimenterGroupRef to set.
    imageIndex - the Image index.
  - setImageExperimenterRef
```
public void setImageExperimenterRef(String experimenter,
                           int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterRef property of Image.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    imageIndex - the Image index.
  - setImageID
```
public void setImageID(String id,
              int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Image.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
  - setImageInstrumentRef
```
public void setImageInstrumentRef(String instrument,
                         int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the InstrumentRef property of Image.
    
    Parameters:
    instrument - InstrumentRef to set.
    imageIndex - the Image index.
  - setImageMicrobeamManipulationRef
```
public void setImageMicrobeamManipulationRef(String microbeamManipulation,
                                    int imageIndex,
                                    int microbeamManipulationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MicrobeamManipulationRef property of Image.
    
    Parameters:
    microbeamManipulation - MicrobeamManipulationRef to set.
    imageIndex - the Image index.
    microbeamManipulationRefIndex - MicrobeamManipulationRef index (unused).
  - setImageName
```
public void setImageName(String name,
                int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of Image.
    
    Parameters:
    name - Name to set.
    imageIndex - the Image index.
  - setImageROIRef
```
public void setImageROIRef(String roi,
                  int imageIndex,
                  int ROIRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ROIRef property of Image.
    
    Parameters:
    roi - ROIRef to set.
    imageIndex - the Image index.
    ROIRefIndex - ROIRef index (unused).
  - setImagingEnvironmentAirPressure
```
public void setImagingEnvironmentAirPressure(Pressure airPressure,
                                    int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AirPressure property of ImagingEnvironment.
    
    Parameters:
    airPressure - AirPressure to set.
    imageIndex - the Image index.
  - setImagingEnvironmentCO2Percent
```
public void setImagingEnvironmentCO2Percent(PercentFraction co2Percent,
                                   int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the CO2Percent property of ImagingEnvironment.
    
    Parameters:
    co2Percent - CO2Percent to set.
    imageIndex - the Image index.
  - setImagingEnvironmentHumidity
```
public void setImagingEnvironmentHumidity(PercentFraction humidity,
                                 int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Humidity property of ImagingEnvironment.
    
    Parameters:
    humidity - Humidity to set.
    imageIndex - the Image index.
  - setImagingEnvironmentTemperature
```
public void setImagingEnvironmentTemperature(Temperature temperature,
                                    int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Temperature property of ImagingEnvironment.
    
    Parameters:
    temperature - Temperature to set.
    imageIndex - the Image index.
  - setInstrumentAnnotationRef
```
public void setInstrumentAnnotationRef(String annotation,
                              int instrumentIndex,
                              int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Instrument.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    annotationRefIndex - AnnotationRef index (unused).
  - setInstrumentID
```
public void setInstrumentID(String id,
                   int instrumentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Instrument.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
  - setLabelAnnotationRef
```
public void setLabelAnnotationRef(String annotation,
                         int ROIIndex,
                         int shapeIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Label.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLabelFillColor
```
public void setLabelFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Label.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFillRule
```
public void setLabelFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Label.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFontFamily
```
public void setLabelFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Label.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFontSize
```
public void setLabelFontSize(Length fontSize,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Label.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFontStyle
```
public void setLabelFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Label.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelID
```
public void setLabelID(String id,
              int ROIIndex,
              int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Label.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelLineCap
```
public void setLabelLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Label.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelLocked
```
public void setLabelLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Label.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelStrokeColor
```
public void setLabelStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Label.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelStrokeDashArray
```
public void setLabelStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Label.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelStrokeWidth
```
public void setLabelStrokeWidth(Length strokeWidth,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Label.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelText
```
public void setLabelText(String text,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Label.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTheC
```
public void setLabelTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Label.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTheT
```
public void setLabelTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Label.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTheZ
```
public void setLabelTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Label.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTransform
```
public void setLabelTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Label.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelVisible
```
public void setLabelVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Label.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelX
```
public void setLabelX(Double x,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X property of Label.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelY
```
public void setLabelY(Double y,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y property of Label.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLaserAnnotationRef
```
public void setLaserAnnotationRef(String annotation,
                         int instrumentIndex,
                         int lightSourceIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Laser.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLaserID
```
public void setLaserID(String id,
              int instrumentIndex,
              int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Laser.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserLotNumber
```
public void setLaserLotNumber(String lotNumber,
                     int instrumentIndex,
                     int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Laser.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserManufacturer
```
public void setLaserManufacturer(String manufacturer,
                        int instrumentIndex,
                        int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Laser.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserModel
```
public void setLaserModel(String model,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Laser.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPower
```
public void setLaserPower(Power power,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Power property of Laser.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserSerialNumber
```
public void setLaserSerialNumber(String serialNumber,
                        int instrumentIndex,
                        int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Laser.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserFrequencyMultiplication
```
public void setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
                                   int instrumentIndex,
                                   int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FrequencyMultiplication property of Laser.
    
    Parameters:
    frequencyMultiplication - FrequencyMultiplication to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserLaserMedium
```
public void setLaserLaserMedium(LaserMedium laserMedium,
                       int instrumentIndex,
                       int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LaserMedium property of Laser.
    
    Parameters:
    laserMedium - LaserMedium to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPockelCell
```
public void setLaserPockelCell(Boolean pockelCell,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PockelCell property of Laser.
    
    Parameters:
    pockelCell - PockelCell to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPulse
```
public void setLaserPulse(Pulse pulse,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Pulse property of Laser.
    
    Parameters:
    pulse - Pulse to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPump
```
public void setLaserPump(String pump,
                int instrumentIndex,
                int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Pump property of Laser.
    
    Parameters:
    pump - Pump to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserRepetitionRate
```
public void setLaserRepetitionRate(Frequency repetitionRate,
                          int instrumentIndex,
                          int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the RepetitionRate property of Laser.
    
    Parameters:
    repetitionRate - RepetitionRate to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserTuneable
```
public void setLaserTuneable(Boolean tuneable,
                    int instrumentIndex,
                    int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Tuneable property of Laser.
    
    Parameters:
    tuneable - Tuneable to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserType
```
public void setLaserType(LaserType type,
                int instrumentIndex,
                int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Laser.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserWavelength
```
public void setLaserWavelength(Length wavelength,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Wavelength property of Laser.
    
    Parameters:
    wavelength - Wavelength to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeAnnotationRef
```
public void setLightEmittingDiodeAnnotationRef(String annotation,
                                      int instrumentIndex,
                                      int lightSourceIndex,
                                      int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of LightEmittingDiode.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLightEmittingDiodeID
```
public void setLightEmittingDiodeID(String id,
                           int instrumentIndex,
                           int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of LightEmittingDiode.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeLotNumber
```
public void setLightEmittingDiodeLotNumber(String lotNumber,
                                  int instrumentIndex,
                                  int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of LightEmittingDiode.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeManufacturer
```
public void setLightEmittingDiodeManufacturer(String manufacturer,
                                     int instrumentIndex,
                                     int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of LightEmittingDiode.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeModel
```
public void setLightEmittingDiodeModel(String model,
                              int instrumentIndex,
                              int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of LightEmittingDiode.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodePower
```
public void setLightEmittingDiodePower(Power power,
                              int instrumentIndex,
                              int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Power property of LightEmittingDiode.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeSerialNumber
```
public void setLightEmittingDiodeSerialNumber(String serialNumber,
                                     int instrumentIndex,
                                     int lightSourceIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of LightEmittingDiode.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightPathAnnotationRef
```
public void setLightPathAnnotationRef(String annotation,
                             int imageIndex,
                             int channelIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of LightPath.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLightPathDichroicRef
```
public void setLightPathDichroicRef(String dichroic,
                           int imageIndex,
                           int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the DichroicRef property of LightPath.
    
    Parameters:
    dichroic - DichroicRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setLightPathEmissionFilterRef
```
public void setLightPathEmissionFilterRef(String emissionFilter,
                                 int imageIndex,
                                 int channelIndex,
                                 int emissionFilterRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the EmissionFilterRef property of LightPath.
    
    Parameters:
    emissionFilter - EmissionFilterRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    emissionFilterRefIndex - EmissionFilterRef index (unused).
  - setLightPathExcitationFilterRef
```
public void setLightPathExcitationFilterRef(String excitationFilter,
                                   int imageIndex,
                                   int channelIndex,
                                   int excitationFilterRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExcitationFilterRef property of LightPath.
    
    Parameters:
    excitationFilter - ExcitationFilterRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    excitationFilterRefIndex - ExcitationFilterRef index (unused).
  - setChannelLightSourceSettingsAttenuation
```
public void setChannelLightSourceSettingsAttenuation(PercentFraction attenuation,
                                            int imageIndex,
                                            int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Attenuation property of LightSourceSettings.
    
    Parameters:
    attenuation - Attenuation to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setMicrobeamManipulationLightSourceSettingsAttenuation
```
public void setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation,
                                                          int experimentIndex,
                                                          int microbeamManipulationIndex,
                                                          int lightSourceSettingsIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Attenuation property of LightSourceSettings.
    
    Parameters:
    attenuation - Attenuation to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
  - setChannelLightSourceSettingsID
```
public void setChannelLightSourceSettingsID(String id,
                                   int imageIndex,
                                   int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of LightSourceSettings.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setMicrobeamManipulationLightSourceSettingsID
```
public void setMicrobeamManipulationLightSourceSettingsID(String id,
                                                 int experimentIndex,
                                                 int microbeamManipulationIndex,
                                                 int lightSourceSettingsIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of LightSourceSettings.
    
    Parameters:
    id - ID to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
  - setChannelLightSourceSettingsWavelength
```
public void setChannelLightSourceSettingsWavelength(Length wavelength,
                                           int imageIndex,
                                           int channelIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Wavelength property of LightSourceSettings.
    
    Parameters:
    wavelength - Wavelength to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setMicrobeamManipulationLightSourceSettingsWavelength
```
public void setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength,
                                                         int experimentIndex,
                                                         int microbeamManipulationIndex,
                                                         int lightSourceSettingsIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Wavelength property of LightSourceSettings.
    
    Parameters:
    wavelength - Wavelength to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
  - setLineAnnotationRef
```
public void setLineAnnotationRef(String annotation,
                        int ROIIndex,
                        int shapeIndex,
                        int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Line.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLineFillColor
```
public void setLineFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Line.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFillRule
```
public void setLineFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Line.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFontFamily
```
public void setLineFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Line.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFontSize
```
public void setLineFontSize(Length fontSize,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Line.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFontStyle
```
public void setLineFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Line.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineID
```
public void setLineID(String id,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Line.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineLineCap
```
public void setLineLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Line.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineLocked
```
public void setLineLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Line.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineStrokeColor
```
public void setLineStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Line.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineStrokeDashArray
```
public void setLineStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Line.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineStrokeWidth
```
public void setLineStrokeWidth(Length strokeWidth,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Line.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineText
```
public void setLineText(String text,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Line.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTheC
```
public void setLineTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Line.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTheT
```
public void setLineTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Line.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTheZ
```
public void setLineTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Line.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTransform
```
public void setLineTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Line.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineVisible
```
public void setLineVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Line.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineMarkerEnd
```
public void setLineMarkerEnd(Marker markerEnd,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MarkerEnd property of Line.
    
    Parameters:
    markerEnd - MarkerEnd to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineMarkerStart
```
public void setLineMarkerStart(Marker markerStart,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MarkerStart property of Line.
    
    Parameters:
    markerStart - MarkerStart to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineX1
```
public void setLineX1(Double x1,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X1 property of Line.
    
    Parameters:
    x1 - X1 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineX2
```
public void setLineX2(Double x2,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X2 property of Line.
    
    Parameters:
    x2 - X2 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineY1
```
public void setLineY1(Double y1,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y1 property of Line.
    
    Parameters:
    y1 - Y1 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineY2
```
public void setLineY2(Double y2,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y2 property of Line.
    
    Parameters:
    y2 - Y2 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setListAnnotationAnnotationRef
```
public void setListAnnotationAnnotationRef(String annotation,
                                  int listAnnotationIndex,
                                  int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of ListAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    listAnnotationIndex - the ListAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setListAnnotationAnnotator
```
public void setListAnnotationAnnotator(String annotator,
                              int listAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of ListAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    listAnnotationIndex - the ListAnnotation index.
  - setListAnnotationDescription
```
public void setListAnnotationDescription(String description,
                                int listAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of ListAnnotation.
    
    Parameters:
    description - Description to set.
    listAnnotationIndex - the ListAnnotation index.
  - setListAnnotationID
```
public void setListAnnotationID(String id,
                       int listAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of ListAnnotation.
    
    Parameters:
    id - ID to set.
    listAnnotationIndex - the ListAnnotation index.
  - setListAnnotationNamespace
```
public void setListAnnotationNamespace(String namespace,
                              int listAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of ListAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    listAnnotationIndex - the ListAnnotation index.
  - setLongAnnotationAnnotationRef
```
public void setLongAnnotationAnnotationRef(String annotation,
                                  int longAnnotationIndex,
                                  int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of LongAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    longAnnotationIndex - the LongAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLongAnnotationAnnotator
```
public void setLongAnnotationAnnotator(String annotator,
                              int longAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of LongAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationDescription
```
public void setLongAnnotationDescription(String description,
                                int longAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of LongAnnotation.
    
    Parameters:
    description - Description to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationID
```
public void setLongAnnotationID(String id,
                       int longAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of LongAnnotation.
    
    Parameters:
    id - ID to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationNamespace
```
public void setLongAnnotationNamespace(String namespace,
                              int longAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of LongAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationValue
```
public void setLongAnnotationValue(Long value,
                          int longAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of LongAnnotation.
    
    Parameters:
    value - Value to set.
    longAnnotationIndex - the LongAnnotation index.
  - setMapAnnotationAnnotationRef
```
public void setMapAnnotationAnnotationRef(String annotation,
                                 int mapAnnotationIndex,
                                 int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of MapAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    mapAnnotationIndex - the MapAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setMapAnnotationAnnotator
```
public void setMapAnnotationAnnotator(String annotator,
                             int mapAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of MapAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMapAnnotationDescription
```
public void setMapAnnotationDescription(String description,
                               int mapAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of MapAnnotation.
    
    Parameters:
    description - Description to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMapAnnotationID
```
public void setMapAnnotationID(String id,
                      int mapAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of MapAnnotation.
    
    Parameters:
    id - ID to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMapAnnotationNamespace
```
public void setMapAnnotationNamespace(String namespace,
                             int mapAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of MapAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMaskAnnotationRef
```
public void setMaskAnnotationRef(String annotation,
                        int ROIIndex,
                        int shapeIndex,
                        int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Mask.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setMaskFillColor
```
public void setMaskFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Mask.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFillRule
```
public void setMaskFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Mask.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFontFamily
```
public void setMaskFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Mask.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFontSize
```
public void setMaskFontSize(Length fontSize,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Mask.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFontStyle
```
public void setMaskFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Mask.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskID
```
public void setMaskID(String id,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Mask.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskLineCap
```
public void setMaskLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Mask.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskLocked
```
public void setMaskLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Mask.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskStrokeColor
```
public void setMaskStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Mask.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskStrokeDashArray
```
public void setMaskStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Mask.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskStrokeWidth
```
public void setMaskStrokeWidth(Length strokeWidth,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Mask.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskText
```
public void setMaskText(String text,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Mask.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTheC
```
public void setMaskTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Mask.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTheT
```
public void setMaskTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Mask.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTheZ
```
public void setMaskTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Mask.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTransform
```
public void setMaskTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Mask.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskVisible
```
public void setMaskVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Mask.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskHeight
```
public void setMaskHeight(Double height,
                 int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Height property of Mask.
    
    Parameters:
    height - Height to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskWidth
```
public void setMaskWidth(Double width,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Width property of Mask.
    
    Parameters:
    width - Width to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskX
```
public void setMaskX(Double x,
            int ROIIndex,
            int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X property of Mask.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskY
```
public void setMaskY(Double y,
            int ROIIndex,
            int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y property of Mask.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMicrobeamManipulationDescription
```
public void setMicrobeamManipulationDescription(String description,
                                       int experimentIndex,
                                       int microbeamManipulationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of MicrobeamManipulation.
    
    Parameters:
    description - Description to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicrobeamManipulationExperimenterRef
```
public void setMicrobeamManipulationExperimenterRef(String experimenter,
                                           int experimentIndex,
                                           int microbeamManipulationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterRef property of MicrobeamManipulation.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicrobeamManipulationID
```
public void setMicrobeamManipulationID(String id,
                              int experimentIndex,
                              int microbeamManipulationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of MicrobeamManipulation.
    
    Parameters:
    id - ID to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicrobeamManipulationROIRef
```
public void setMicrobeamManipulationROIRef(String roi,
                                  int experimentIndex,
                                  int microbeamManipulationIndex,
                                  int ROIRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ROIRef property of MicrobeamManipulation.
    
    Parameters:
    roi - ROIRef to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    ROIRefIndex - ROIRef index (unused).
  - setMicrobeamManipulationType
```
public void setMicrobeamManipulationType(MicrobeamManipulationType type,
                                int experimentIndex,
                                int microbeamManipulationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of MicrobeamManipulation.
    
    Parameters:
    type - Type to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicroscopeLotNumber
```
public void setMicroscopeLotNumber(String lotNumber,
                          int instrumentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Microscope.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeManufacturer
```
public void setMicroscopeManufacturer(String manufacturer,
                             int instrumentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Microscope.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeModel
```
public void setMicroscopeModel(String model,
                      int instrumentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Microscope.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeSerialNumber
```
public void setMicroscopeSerialNumber(String serialNumber,
                             int instrumentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Microscope.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeType
```
public void setMicroscopeType(MicroscopeType type,
                     int instrumentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Microscope.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
  - setObjectiveAnnotationRef
```
public void setObjectiveAnnotationRef(String annotation,
                             int instrumentIndex,
                             int objectiveIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Objective.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    annotationRefIndex - AnnotationRef index (unused).
  - setObjectiveCalibratedMagnification
```
public void setObjectiveCalibratedMagnification(Double calibratedMagnification,
                                       int instrumentIndex,
                                       int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the CalibratedMagnification property of Objective.
    
    Parameters:
    calibratedMagnification - CalibratedMagnification to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveCorrection
```
public void setObjectiveCorrection(Correction correction,
                          int instrumentIndex,
                          int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Correction property of Objective.
    
    Parameters:
    correction - Correction to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveID
```
public void setObjectiveID(String id,
                  int instrumentIndex,
                  int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Objective.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveImmersion
```
public void setObjectiveImmersion(Immersion immersion,
                         int instrumentIndex,
                         int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Immersion property of Objective.
    
    Parameters:
    immersion - Immersion to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveIris
```
public void setObjectiveIris(Boolean iris,
                    int instrumentIndex,
                    int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Iris property of Objective.
    
    Parameters:
    iris - Iris to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveLensNA
```
public void setObjectiveLensNA(Double lensNA,
                      int instrumentIndex,
                      int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LensNA property of Objective.
    
    Parameters:
    lensNA - LensNA to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveLotNumber
```
public void setObjectiveLotNumber(String lotNumber,
                         int instrumentIndex,
                         int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LotNumber property of Objective.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveManufacturer
```
public void setObjectiveManufacturer(String manufacturer,
                            int instrumentIndex,
                            int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Manufacturer property of Objective.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveModel
```
public void setObjectiveModel(String model,
                     int instrumentIndex,
                     int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Model property of Objective.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveNominalMagnification
```
public void setObjectiveNominalMagnification(Double nominalMagnification,
                                    int instrumentIndex,
                                    int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the NominalMagnification property of Objective.
    
    Parameters:
    nominalMagnification - NominalMagnification to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveSerialNumber
```
public void setObjectiveSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SerialNumber property of Objective.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveWorkingDistance
```
public void setObjectiveWorkingDistance(Length workingDistance,
                               int instrumentIndex,
                               int objectiveIndex)
```
    Description copied from interface: MetadataStore
    
    Set the WorkingDistance property of Objective.
    
    Parameters:
    workingDistance - WorkingDistance to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveSettingsCorrectionCollar
```
public void setObjectiveSettingsCorrectionCollar(Double correctionCollar,
                                        int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the CorrectionCollar property of ObjectiveSettings.
    
    Parameters:
    correctionCollar - CorrectionCollar to set.
    imageIndex - the Image index.
  - setObjectiveSettingsID
```
public void setObjectiveSettingsID(String id,
                          int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of ObjectiveSettings.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
  - setObjectiveSettingsMedium
```
public void setObjectiveSettingsMedium(Medium medium,
                              int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Medium property of ObjectiveSettings.
    
    Parameters:
    medium - Medium to set.
    imageIndex - the Image index.
  - setObjectiveSettingsRefractiveIndex
```
public void setObjectiveSettingsRefractiveIndex(Double refractiveIndex,
                                       int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the RefractiveIndex property of ObjectiveSettings.
    
    Parameters:
    refractiveIndex - RefractiveIndex to set.
    imageIndex - the Image index.
  - setPixelsBigEndian
```
public void setPixelsBigEndian(Boolean bigEndian,
                      int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the BigEndian property of Pixels.
    
    Parameters:
    bigEndian - BigEndian to set.
    imageIndex - the Image index.
  - setPixelsDimensionOrder
```
public void setPixelsDimensionOrder(DimensionOrder dimensionOrder,
                           int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the DimensionOrder property of Pixels.
    
    Parameters:
    dimensionOrder - DimensionOrder to set.
    imageIndex - the Image index.
  - setPixelsID
```
public void setPixelsID(String id,
               int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Pixels.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
  - setPixelsInterleaved
```
public void setPixelsInterleaved(Boolean interleaved,
                        int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Interleaved property of Pixels.
    
    Parameters:
    interleaved - Interleaved to set.
    imageIndex - the Image index.
  - setPixelsPhysicalSizeX
```
public void setPixelsPhysicalSizeX(Length physicalSizeX,
                          int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PhysicalSizeX property of Pixels.
    
    Parameters:
    physicalSizeX - PhysicalSizeX to set.
    imageIndex - the Image index.
  - setPixelsPhysicalSizeY
```
public void setPixelsPhysicalSizeY(Length physicalSizeY,
                          int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PhysicalSizeY property of Pixels.
    
    Parameters:
    physicalSizeY - PhysicalSizeY to set.
    imageIndex - the Image index.
  - setPixelsPhysicalSizeZ
```
public void setPixelsPhysicalSizeZ(Length physicalSizeZ,
                          int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PhysicalSizeZ property of Pixels.
    
    Parameters:
    physicalSizeZ - PhysicalSizeZ to set.
    imageIndex - the Image index.
  - setPixelsSignificantBits
```
public void setPixelsSignificantBits(PositiveInteger significantBits,
                            int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SignificantBits property of Pixels.
    
    Parameters:
    significantBits - SignificantBits to set.
    imageIndex - the Image index.
  - setPixelsSizeC
```
public void setPixelsSizeC(PositiveInteger sizeC,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SizeC property of Pixels.
    
    Parameters:
    sizeC - SizeC to set.
    imageIndex - the Image index.
  - setPixelsSizeT
```
public void setPixelsSizeT(PositiveInteger sizeT,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SizeT property of Pixels.
    
    Parameters:
    sizeT - SizeT to set.
    imageIndex - the Image index.
  - setPixelsSizeX
```
public void setPixelsSizeX(PositiveInteger sizeX,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SizeX property of Pixels.
    
    Parameters:
    sizeX - SizeX to set.
    imageIndex - the Image index.
  - setPixelsSizeY
```
public void setPixelsSizeY(PositiveInteger sizeY,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SizeY property of Pixels.
    
    Parameters:
    sizeY - SizeY to set.
    imageIndex - the Image index.
  - setPixelsSizeZ
```
public void setPixelsSizeZ(PositiveInteger sizeZ,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the SizeZ property of Pixels.
    
    Parameters:
    sizeZ - SizeZ to set.
    imageIndex - the Image index.
  - setPixelsTimeIncrement
```
public void setPixelsTimeIncrement(Time timeIncrement,
                          int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TimeIncrement property of Pixels.
    
    Parameters:
    timeIncrement - TimeIncrement to set.
    imageIndex - the Image index.
  - setPixelsType
```
public void setPixelsType(PixelType type,
                 int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Pixels.
    
    Parameters:
    type - Type to set.
    imageIndex - the Image index.
  - setPlaneAnnotationRef
```
public void setPlaneAnnotationRef(String annotation,
                         int imageIndex,
                         int planeIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Plane.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPlaneDeltaT
```
public void setPlaneDeltaT(Time deltaT,
                  int imageIndex,
                  int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the DeltaT property of Plane.
    
    Parameters:
    deltaT - DeltaT to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneExposureTime
```
public void setPlaneExposureTime(Time exposureTime,
                        int imageIndex,
                        int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExposureTime property of Plane.
    
    Parameters:
    exposureTime - ExposureTime to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneHashSHA1
```
public void setPlaneHashSHA1(String hashSHA1,
                    int imageIndex,
                    int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the HashSHA1 property of Plane.
    
    Parameters:
    hashSHA1 - HashSHA1 to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlanePositionX
```
public void setPlanePositionX(Length positionX,
                     int imageIndex,
                     int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PositionX property of Plane.
    
    Parameters:
    positionX - PositionX to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlanePositionY
```
public void setPlanePositionY(Length positionY,
                     int imageIndex,
                     int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PositionY property of Plane.
    
    Parameters:
    positionY - PositionY to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlanePositionZ
```
public void setPlanePositionZ(Length positionZ,
                     int imageIndex,
                     int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PositionZ property of Plane.
    
    Parameters:
    positionZ - PositionZ to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneTheC
```
public void setPlaneTheC(NonNegativeInteger theC,
                int imageIndex,
                int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Plane.
    
    Parameters:
    theC - TheC to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneTheT
```
public void setPlaneTheT(NonNegativeInteger theT,
                int imageIndex,
                int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Plane.
    
    Parameters:
    theT - TheT to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneTheZ
```
public void setPlaneTheZ(NonNegativeInteger theZ,
                int imageIndex,
                int planeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Plane.
    
    Parameters:
    theZ - TheZ to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlateAnnotationRef
```
public void setPlateAnnotationRef(String annotation,
                         int plateIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Plate.
    
    Parameters:
    annotation - AnnotationRef to set.
    plateIndex - the Plate index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPlateColumnNamingConvention
```
public void setPlateColumnNamingConvention(NamingConvention columnNamingConvention,
                                  int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ColumnNamingConvention property of Plate.
    
    Parameters:
    columnNamingConvention - ColumnNamingConvention to set.
    plateIndex - the Plate index.
  - setPlateColumns
```
public void setPlateColumns(PositiveInteger columns,
                   int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Columns property of Plate.
    
    Parameters:
    columns - Columns to set.
    plateIndex - the Plate index.
  - setPlateDescription
```
public void setPlateDescription(String description,
                       int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of Plate.
    
    Parameters:
    description - Description to set.
    plateIndex - the Plate index.
  - setPlateExternalIdentifier
```
public void setPlateExternalIdentifier(String externalIdentifier,
                              int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExternalIdentifier property of Plate.
    
    Parameters:
    externalIdentifier - ExternalIdentifier to set.
    plateIndex - the Plate index.
  - setPlateFieldIndex
```
public void setPlateFieldIndex(NonNegativeInteger fieldIndex,
                      int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FieldIndex property of Plate.
    
    Parameters:
    fieldIndex - FieldIndex to set.
    plateIndex - the Plate index.
  - setPlateID
```
public void setPlateID(String id,
              int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Plate.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
  - setPlateName
```
public void setPlateName(String name,
                int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of Plate.
    
    Parameters:
    name - Name to set.
    plateIndex - the Plate index.
  - setPlateRowNamingConvention
```
public void setPlateRowNamingConvention(NamingConvention rowNamingConvention,
                               int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the RowNamingConvention property of Plate.
    
    Parameters:
    rowNamingConvention - RowNamingConvention to set.
    plateIndex - the Plate index.
  - setPlateRows
```
public void setPlateRows(PositiveInteger rows,
                int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Rows property of Plate.
    
    Parameters:
    rows - Rows to set.
    plateIndex - the Plate index.
  - setPlateStatus
```
public void setPlateStatus(String status,
                  int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Status property of Plate.
    
    Parameters:
    status - Status to set.
    plateIndex - the Plate index.
  - setPlateWellOriginX
```
public void setPlateWellOriginX(Length wellOriginX,
                       int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the WellOriginX property of Plate.
    
    Parameters:
    wellOriginX - WellOriginX to set.
    plateIndex - the Plate index.
  - setPlateWellOriginY
```
public void setPlateWellOriginY(Length wellOriginY,
                       int plateIndex)
```
    Description copied from interface: MetadataStore
    
    Set the WellOriginY property of Plate.
    
    Parameters:
    wellOriginY - WellOriginY to set.
    plateIndex - the Plate index.
  - setPlateAcquisitionAnnotationRef
```
public void setPlateAcquisitionAnnotationRef(String annotation,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of PlateAcquisition.
    
    Parameters:
    annotation - AnnotationRef to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPlateAcquisitionDescription
```
public void setPlateAcquisitionDescription(String description,
                                  int plateIndex,
                                  int plateAcquisitionIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of PlateAcquisition.
    
    Parameters:
    description - Description to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionEndTime
```
public void setPlateAcquisitionEndTime(Timestamp endTime,
                              int plateIndex,
                              int plateAcquisitionIndex)
```
    Description copied from interface: MetadataStore
    
    Set the EndTime property of PlateAcquisition.
    
    Parameters:
    endTime - EndTime to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionID
```
public void setPlateAcquisitionID(String id,
                         int plateIndex,
                         int plateAcquisitionIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of PlateAcquisition.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionMaximumFieldCount
```
public void setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
                                        int plateIndex,
                                        int plateAcquisitionIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MaximumFieldCount property of PlateAcquisition.
    
    Parameters:
    maximumFieldCount - MaximumFieldCount to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionName
```
public void setPlateAcquisitionName(String name,
                           int plateIndex,
                           int plateAcquisitionIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of PlateAcquisition.
    
    Parameters:
    name - Name to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionStartTime
```
public void setPlateAcquisitionStartTime(Timestamp startTime,
                                int plateIndex,
                                int plateAcquisitionIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StartTime property of PlateAcquisition.
    
    Parameters:
    startTime - StartTime to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionWellSampleRef
```
public void setPlateAcquisitionWellSampleRef(String wellSample,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int wellSampleRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the WellSampleRef property of PlateAcquisition.
    
    Parameters:
    wellSample - WellSampleRef to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    wellSampleRefIndex - WellSampleRef index (unused).
  - setPointAnnotationRef
```
public void setPointAnnotationRef(String annotation,
                         int ROIIndex,
                         int shapeIndex,
                         int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Point.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPointFillColor
```
public void setPointFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Point.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFillRule
```
public void setPointFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Point.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFontFamily
```
public void setPointFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Point.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFontSize
```
public void setPointFontSize(Length fontSize,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Point.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFontStyle
```
public void setPointFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Point.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointID
```
public void setPointID(String id,
              int ROIIndex,
              int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Point.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointLineCap
```
public void setPointLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Point.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointLocked
```
public void setPointLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Point.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointStrokeColor
```
public void setPointStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Point.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointStrokeDashArray
```
public void setPointStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Point.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointStrokeWidth
```
public void setPointStrokeWidth(Length strokeWidth,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Point.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointText
```
public void setPointText(String text,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Point.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTheC
```
public void setPointTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Point.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTheT
```
public void setPointTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Point.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTheZ
```
public void setPointTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Point.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTransform
```
public void setPointTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Point.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointVisible
```
public void setPointVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Point.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointX
```
public void setPointX(Double x,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X property of Point.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointY
```
public void setPointY(Double y,
             int ROIIndex,
             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y property of Point.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonAnnotationRef
```
public void setPolygonAnnotationRef(String annotation,
                           int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Polygon.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPolygonFillColor
```
public void setPolygonFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Polygon.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFillRule
```
public void setPolygonFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Polygon.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFontFamily
```
public void setPolygonFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Polygon.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFontSize
```
public void setPolygonFontSize(Length fontSize,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Polygon.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFontStyle
```
public void setPolygonFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Polygon.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonID
```
public void setPolygonID(String id,
                int ROIIndex,
                int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Polygon.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonLineCap
```
public void setPolygonLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Polygon.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonLocked
```
public void setPolygonLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Polygon.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonStrokeColor
```
public void setPolygonStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Polygon.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonStrokeDashArray
```
public void setPolygonStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Polygon.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonStrokeWidth
```
public void setPolygonStrokeWidth(Length strokeWidth,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Polygon.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonText
```
public void setPolygonText(String text,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Polygon.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTheC
```
public void setPolygonTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Polygon.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTheT
```
public void setPolygonTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Polygon.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTheZ
```
public void setPolygonTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Polygon.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTransform
```
public void setPolygonTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Polygon.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonVisible
```
public void setPolygonVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Polygon.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonPoints
```
public void setPolygonPoints(String points,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Points property of Polygon.
    
    Parameters:
    points - Points to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineAnnotationRef
```
public void setPolylineAnnotationRef(String annotation,
                            int ROIIndex,
                            int shapeIndex,
                            int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Polyline.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPolylineFillColor
```
public void setPolylineFillColor(Color fillColor,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Polyline.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFillRule
```
public void setPolylineFillRule(FillRule fillRule,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Polyline.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFontFamily
```
public void setPolylineFontFamily(FontFamily fontFamily,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Polyline.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFontSize
```
public void setPolylineFontSize(Length fontSize,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Polyline.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFontStyle
```
public void setPolylineFontStyle(FontStyle fontStyle,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Polyline.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineID
```
public void setPolylineID(String id,
                 int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Polyline.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineLineCap
```
public void setPolylineLineCap(LineCap lineCap,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Polyline.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineLocked
```
public void setPolylineLocked(Boolean locked,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Polyline.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineStrokeColor
```
public void setPolylineStrokeColor(Color strokeColor,
                          int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Polyline.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineStrokeDashArray
```
public void setPolylineStrokeDashArray(String strokeDashArray,
                              int ROIIndex,
                              int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Polyline.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineStrokeWidth
```
public void setPolylineStrokeWidth(Length strokeWidth,
                          int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Polyline.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineText
```
public void setPolylineText(String text,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Polyline.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTheC
```
public void setPolylineTheC(NonNegativeInteger theC,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Polyline.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTheT
```
public void setPolylineTheT(NonNegativeInteger theT,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Polyline.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTheZ
```
public void setPolylineTheZ(NonNegativeInteger theZ,
                   int ROIIndex,
                   int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Polyline.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTransform
```
public void setPolylineTransform(AffineTransform transform,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Polyline.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineVisible
```
public void setPolylineVisible(Boolean visible,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Polyline.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineMarkerEnd
```
public void setPolylineMarkerEnd(Marker markerEnd,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MarkerEnd property of Polyline.
    
    Parameters:
    markerEnd - MarkerEnd to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineMarkerStart
```
public void setPolylineMarkerStart(Marker markerStart,
                          int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the MarkerStart property of Polyline.
    
    Parameters:
    markerStart - MarkerStart to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylinePoints
```
public void setPolylinePoints(String points,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Points property of Polyline.
    
    Parameters:
    points - Points to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setProjectAnnotationRef
```
public void setProjectAnnotationRef(String annotation,
                           int projectIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Project.
    
    Parameters:
    annotation - AnnotationRef to set.
    projectIndex - the Project index.
    annotationRefIndex - AnnotationRef index (unused).
  - setProjectDatasetRef
```
public void setProjectDatasetRef(String dataset,
                        int projectIndex,
                        int datasetRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the DatasetRef property of Project.
    
    Parameters:
    dataset - DatasetRef to set.
    projectIndex - the Project index.
    datasetRefIndex - DatasetRef index (unused).
  - setProjectDescription
```
public void setProjectDescription(String description,
                         int projectIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of Project.
    
    Parameters:
    description - Description to set.
    projectIndex - the Project index.
  - setProjectExperimenterGroupRef
```
public void setProjectExperimenterGroupRef(String experimenterGroup,
                                  int projectIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterGroupRef property of Project.
    
    Parameters:
    experimenterGroup - ExperimenterGroupRef to set.
    projectIndex - the Project index.
  - setProjectExperimenterRef
```
public void setProjectExperimenterRef(String experimenter,
                             int projectIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExperimenterRef property of Project.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    projectIndex - the Project index.
  - setProjectID
```
public void setProjectID(String id,
                int projectIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Project.
    
    Parameters:
    id - ID to set.
    projectIndex - the Project index.
  - setProjectName
```
public void setProjectName(String name,
                  int projectIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of Project.
    
    Parameters:
    name - Name to set.
    projectIndex - the Project index.
  - setROIAnnotationRef
```
public void setROIAnnotationRef(String annotation,
                       int ROIIndex,
                       int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of ROI.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    annotationRefIndex - AnnotationRef index (unused).
  - setROIDescription
```
public void setROIDescription(String description,
                     int ROIIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of ROI.
    
    Parameters:
    description - Description to set.
    ROIIndex - the ROI index.
  - setROIID
```
public void setROIID(String id,
            int ROIIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of ROI.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
  - setROIName
```
public void setROIName(String name,
              int ROIIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of ROI.
    
    Parameters:
    name - Name to set.
    ROIIndex - the ROI index.
  - setROINamespace
```
public void setROINamespace(String namespace,
                   int ROIIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of ROI.
    
    Parameters:
    namespace - Namespace to set.
    ROIIndex - the ROI index.
  - setReagentAnnotationRef
```
public void setReagentAnnotationRef(String annotation,
                           int screenIndex,
                           int reagentIndex,
                           int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Reagent.
    
    Parameters:
    annotation - AnnotationRef to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    annotationRefIndex - AnnotationRef index (unused).
  - setReagentDescription
```
public void setReagentDescription(String description,
                         int screenIndex,
                         int reagentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of Reagent.
    
    Parameters:
    description - Description to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setReagentID
```
public void setReagentID(String id,
                int screenIndex,
                int reagentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Reagent.
    
    Parameters:
    id - ID to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setReagentName
```
public void setReagentName(String name,
                  int screenIndex,
                  int reagentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of Reagent.
    
    Parameters:
    name - Name to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setReagentReagentIdentifier
```
public void setReagentReagentIdentifier(String reagentIdentifier,
                               int screenIndex,
                               int reagentIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ReagentIdentifier property of Reagent.
    
    Parameters:
    reagentIdentifier - ReagentIdentifier to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setRectangleAnnotationRef
```
public void setRectangleAnnotationRef(String annotation,
                             int ROIIndex,
                             int shapeIndex,
                             int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Rectangle.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setRectangleFillColor
```
public void setRectangleFillColor(Color fillColor,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillColor property of Rectangle.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFillRule
```
public void setRectangleFillRule(FillRule fillRule,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FillRule property of Rectangle.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFontFamily
```
public void setRectangleFontFamily(FontFamily fontFamily,
                          int ROIIndex,
                          int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontFamily property of Rectangle.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFontSize
```
public void setRectangleFontSize(Length fontSize,
                        int ROIIndex,
                        int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontSize property of Rectangle.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFontStyle
```
public void setRectangleFontStyle(FontStyle fontStyle,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FontStyle property of Rectangle.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleID
```
public void setRectangleID(String id,
                  int ROIIndex,
                  int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Rectangle.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleLineCap
```
public void setRectangleLineCap(LineCap lineCap,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the LineCap property of Rectangle.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleLocked
```
public void setRectangleLocked(Boolean locked,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Locked property of Rectangle.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleStrokeColor
```
public void setRectangleStrokeColor(Color strokeColor,
                           int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeColor property of Rectangle.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleStrokeDashArray
```
public void setRectangleStrokeDashArray(String strokeDashArray,
                               int ROIIndex,
                               int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeDashArray property of Rectangle.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleStrokeWidth
```
public void setRectangleStrokeWidth(Length strokeWidth,
                           int ROIIndex,
                           int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the StrokeWidth property of Rectangle.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleText
```
public void setRectangleText(String text,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Text property of Rectangle.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTheC
```
public void setRectangleTheC(NonNegativeInteger theC,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheC property of Rectangle.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTheT
```
public void setRectangleTheT(NonNegativeInteger theT,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheT property of Rectangle.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTheZ
```
public void setRectangleTheZ(NonNegativeInteger theZ,
                    int ROIIndex,
                    int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the TheZ property of Rectangle.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTransform
```
public void setRectangleTransform(AffineTransform transform,
                         int ROIIndex,
                         int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transform property of Rectangle.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleVisible
```
public void setRectangleVisible(Boolean visible,
                       int ROIIndex,
                       int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Visible property of Rectangle.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleHeight
```
public void setRectangleHeight(Double height,
                      int ROIIndex,
                      int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Height property of Rectangle.
    
    Parameters:
    height - Height to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleWidth
```
public void setRectangleWidth(Double width,
                     int ROIIndex,
                     int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Width property of Rectangle.
    
    Parameters:
    width - Width to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleX
```
public void setRectangleX(Double x,
                 int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X property of Rectangle.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleY
```
public void setRectangleY(Double y,
                 int ROIIndex,
                 int shapeIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y property of Rectangle.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRightsRightsHeld
```
public void setRightsRightsHeld(String rightsHeld)
```
    Description copied from interface: MetadataStore
    
    Set the RightsHeld property of Rights.
    
    Parameters:
    rightsHeld - RightsHeld to set.
  - setRightsRightsHolder
```
public void setRightsRightsHolder(String rightsHolder)
```
    Description copied from interface: MetadataStore
    
    Set the RightsHolder property of Rights.
    
    Parameters:
    rightsHolder - RightsHolder to set.
  - setScreenAnnotationRef
```
public void setScreenAnnotationRef(String annotation,
                          int screenIndex,
                          int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Screen.
    
    Parameters:
    annotation - AnnotationRef to set.
    screenIndex - the Screen index.
    annotationRefIndex - AnnotationRef index (unused).
  - setScreenDescription
```
public void setScreenDescription(String description,
                        int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of Screen.
    
    Parameters:
    description - Description to set.
    screenIndex - the Screen index.
  - setScreenID
```
public void setScreenID(String id,
               int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Screen.
    
    Parameters:
    id - ID to set.
    screenIndex - the Screen index.
  - setScreenName
```
public void setScreenName(String name,
                 int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of Screen.
    
    Parameters:
    name - Name to set.
    screenIndex - the Screen index.
  - setScreenPlateRef
```
public void setScreenPlateRef(String plate,
                     int screenIndex,
                     int plateRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PlateRef property of Screen.
    
    Parameters:
    plate - PlateRef to set.
    screenIndex - the Screen index.
    plateRefIndex - PlateRef index (unused).
  - setScreenProtocolDescription
```
public void setScreenProtocolDescription(String protocolDescription,
                                int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ProtocolDescription property of Screen.
    
    Parameters:
    protocolDescription - ProtocolDescription to set.
    screenIndex - the Screen index.
  - setScreenProtocolIdentifier
```
public void setScreenProtocolIdentifier(String protocolIdentifier,
                               int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ProtocolIdentifier property of Screen.
    
    Parameters:
    protocolIdentifier - ProtocolIdentifier to set.
    screenIndex - the Screen index.
  - setScreenReagentSetDescription
```
public void setScreenReagentSetDescription(String reagentSetDescription,
                                  int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ReagentSetDescription property of Screen.
    
    Parameters:
    reagentSetDescription - ReagentSetDescription to set.
    screenIndex - the Screen index.
  - setScreenReagentSetIdentifier
```
public void setScreenReagentSetIdentifier(String reagentSetIdentifier,
                                 int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ReagentSetIdentifier property of Screen.
    
    Parameters:
    reagentSetIdentifier - ReagentSetIdentifier to set.
    screenIndex - the Screen index.
  - setScreenType
```
public void setScreenType(String type,
                 int screenIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Screen.
    
    Parameters:
    type - Type to set.
    screenIndex - the Screen index.
  - setStageLabelName
```
public void setStageLabelName(String name,
                     int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Name property of StageLabel.
    
    Parameters:
    name - Name to set.
    imageIndex - the Image index.
  - setStageLabelX
```
public void setStageLabelX(Length x,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the X property of StageLabel.
    
    Parameters:
    x - X to set.
    imageIndex - the Image index.
  - setStageLabelY
```
public void setStageLabelY(Length y,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Y property of StageLabel.
    
    Parameters:
    y - Y to set.
    imageIndex - the Image index.
  - setStageLabelZ
```
public void setStageLabelZ(Length z,
                  int imageIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Z property of StageLabel.
    
    Parameters:
    z - Z to set.
    imageIndex - the Image index.
  - setTagAnnotationAnnotationRef
```
public void setTagAnnotationAnnotationRef(String annotation,
                                 int tagAnnotationIndex,
                                 int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of TagAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    tagAnnotationIndex - the TagAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setTagAnnotationAnnotator
```
public void setTagAnnotationAnnotator(String annotator,
                             int tagAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of TagAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationDescription
```
public void setTagAnnotationDescription(String description,
                               int tagAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of TagAnnotation.
    
    Parameters:
    description - Description to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationID
```
public void setTagAnnotationID(String id,
                      int tagAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of TagAnnotation.
    
    Parameters:
    id - ID to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationNamespace
```
public void setTagAnnotationNamespace(String namespace,
                             int tagAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of TagAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationValue
```
public void setTagAnnotationValue(String value,
                         int tagAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of TagAnnotation.
    
    Parameters:
    value - Value to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTermAnnotationAnnotationRef
```
public void setTermAnnotationAnnotationRef(String annotation,
                                  int termAnnotationIndex,
                                  int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of TermAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    termAnnotationIndex - the TermAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setTermAnnotationAnnotator
```
public void setTermAnnotationAnnotator(String annotator,
                              int termAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of TermAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationDescription
```
public void setTermAnnotationDescription(String description,
                                int termAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of TermAnnotation.
    
    Parameters:
    description - Description to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationID
```
public void setTermAnnotationID(String id,
                       int termAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of TermAnnotation.
    
    Parameters:
    id - ID to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationNamespace
```
public void setTermAnnotationNamespace(String namespace,
                              int termAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of TermAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationValue
```
public void setTermAnnotationValue(String value,
                          int termAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of TermAnnotation.
    
    Parameters:
    value - Value to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTiffDataFirstC
```
public void setTiffDataFirstC(NonNegativeInteger firstC,
                     int imageIndex,
                     int tiffDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FirstC property of TiffData.
    
    Parameters:
    firstC - FirstC to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataFirstT
```
public void setTiffDataFirstT(NonNegativeInteger firstT,
                     int imageIndex,
                     int tiffDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FirstT property of TiffData.
    
    Parameters:
    firstT - FirstT to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataFirstZ
```
public void setTiffDataFirstZ(NonNegativeInteger firstZ,
                     int imageIndex,
                     int tiffDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FirstZ property of TiffData.
    
    Parameters:
    firstZ - FirstZ to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataIFD
```
public void setTiffDataIFD(NonNegativeInteger ifd,
                  int imageIndex,
                  int tiffDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the IFD property of TiffData.
    
    Parameters:
    ifd - IFD to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataPlaneCount
```
public void setTiffDataPlaneCount(NonNegativeInteger planeCount,
                         int imageIndex,
                         int tiffDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PlaneCount property of TiffData.
    
    Parameters:
    planeCount - PlaneCount to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTimestampAnnotationAnnotationRef
```
public void setTimestampAnnotationAnnotationRef(String annotation,
                                       int timestampAnnotationIndex,
                                       int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of TimestampAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setTimestampAnnotationAnnotator
```
public void setTimestampAnnotationAnnotator(String annotator,
                                   int timestampAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of TimestampAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationDescription
```
public void setTimestampAnnotationDescription(String description,
                                     int timestampAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of TimestampAnnotation.
    
    Parameters:
    description - Description to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationID
```
public void setTimestampAnnotationID(String id,
                            int timestampAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of TimestampAnnotation.
    
    Parameters:
    id - ID to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationNamespace
```
public void setTimestampAnnotationNamespace(String namespace,
                                   int timestampAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of TimestampAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationValue
```
public void setTimestampAnnotationValue(Timestamp value,
                               int timestampAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of TimestampAnnotation.
    
    Parameters:
    value - Value to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTransmittanceRangeCutIn
```
public void setTransmittanceRangeCutIn(Length cutIn,
                              int instrumentIndex,
                              int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the CutIn property of TransmittanceRange.
    
    Parameters:
    cutIn - CutIn to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeCutInTolerance
```
public void setTransmittanceRangeCutInTolerance(Length cutInTolerance,
                                       int instrumentIndex,
                                       int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the CutInTolerance property of TransmittanceRange.
    
    Parameters:
    cutInTolerance - CutInTolerance to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeCutOut
```
public void setTransmittanceRangeCutOut(Length cutOut,
                               int instrumentIndex,
                               int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the CutOut property of TransmittanceRange.
    
    Parameters:
    cutOut - CutOut to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeCutOutTolerance
```
public void setTransmittanceRangeCutOutTolerance(Length cutOutTolerance,
                                        int instrumentIndex,
                                        int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the CutOutTolerance property of TransmittanceRange.
    
    Parameters:
    cutOutTolerance - CutOutTolerance to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeTransmittance
```
public void setTransmittanceRangeTransmittance(PercentFraction transmittance,
                                      int instrumentIndex,
                                      int filterIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Transmittance property of TransmittanceRange.
    
    Parameters:
    transmittance - Transmittance to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setUUIDFileName
```
public void setUUIDFileName(String fileName,
                   int imageIndex,
                   int tiffDataIndex)
```
    Description copied from interface: MetadataStore
    
    Set the FileName property of UUID.
    
    Parameters:
    fileName - FileName to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setWellAnnotationRef
```
public void setWellAnnotationRef(String annotation,
                        int plateIndex,
                        int wellIndex,
                        int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of Well.
    
    Parameters:
    annotation - AnnotationRef to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    annotationRefIndex - AnnotationRef index (unused).
  - setWellColor
```
public void setWellColor(Color color,
                int plateIndex,
                int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Color property of Well.
    
    Parameters:
    color - Color to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellColumn
```
public void setWellColumn(NonNegativeInteger column,
                 int plateIndex,
                 int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Column property of Well.
    
    Parameters:
    column - Column to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellExternalDescription
```
public void setWellExternalDescription(String externalDescription,
                              int plateIndex,
                              int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExternalDescription property of Well.
    
    Parameters:
    externalDescription - ExternalDescription to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellExternalIdentifier
```
public void setWellExternalIdentifier(String externalIdentifier,
                             int plateIndex,
                             int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ExternalIdentifier property of Well.
    
    Parameters:
    externalIdentifier - ExternalIdentifier to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellID
```
public void setWellID(String id,
             int plateIndex,
             int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of Well.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellReagentRef
```
public void setWellReagentRef(String reagent,
                     int plateIndex,
                     int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ReagentRef property of Well.
    
    Parameters:
    reagent - ReagentRef to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellRow
```
public void setWellRow(NonNegativeInteger row,
              int plateIndex,
              int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Row property of Well.
    
    Parameters:
    row - Row to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellType
```
public void setWellType(String type,
               int plateIndex,
               int wellIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Type property of Well.
    
    Parameters:
    type - Type to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellSampleID
```
public void setWellSampleID(String id,
                   int plateIndex,
                   int wellIndex,
                   int wellSampleIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of WellSample.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSampleImageRef
```
public void setWellSampleImageRef(String image,
                         int plateIndex,
                         int wellIndex,
                         int wellSampleIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ImageRef property of WellSample.
    
    Parameters:
    image - ImageRef to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSampleIndex
```
public void setWellSampleIndex(NonNegativeInteger index,
                      int plateIndex,
                      int wellIndex,
                      int wellSampleIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Index property of WellSample.
    
    Parameters:
    index - Index to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSamplePositionX
```
public void setWellSamplePositionX(Length positionX,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PositionX property of WellSample.
    
    Parameters:
    positionX - PositionX to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSamplePositionY
```
public void setWellSamplePositionY(Length positionY,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)
```
    Description copied from interface: MetadataStore
    
    Set the PositionY property of WellSample.
    
    Parameters:
    positionY - PositionY to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSampleTimepoint
```
public void setWellSampleTimepoint(Timestamp timepoint,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Timepoint property of WellSample.
    
    Parameters:
    timepoint - Timepoint to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setXMLAnnotationAnnotationRef
```
public void setXMLAnnotationAnnotationRef(String annotation,
                                 int XMLAnnotationIndex,
                                 int annotationRefIndex)
```
    Description copied from interface: MetadataStore
    
    Set the AnnotationRef property of XMLAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    XMLAnnotationIndex - the XMLAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setXMLAnnotationAnnotator
```
public void setXMLAnnotationAnnotator(String annotator,
                             int XMLAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Annotator property of XMLAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationDescription
```
public void setXMLAnnotationDescription(String description,
                               int XMLAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Description property of XMLAnnotation.
    
    Parameters:
    description - Description to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationID
```
public void setXMLAnnotationID(String id,
                      int XMLAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the ID property of XMLAnnotation.
    
    Parameters:
    id - ID to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationNamespace
```
public void setXMLAnnotationNamespace(String namespace,
                             int XMLAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Namespace property of XMLAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationValue
```
public void setXMLAnnotationValue(String value,
                         int XMLAnnotationIndex)
```
    Description copied from interface: MetadataStore
    
    Set the Value property of XMLAnnotation.
    
    Parameters:
    value - Value to set.
    XMLAnnotationIndex - the XMLAnnotation index.

Class OMEXMLMetadataImpl

Field Summary

Fields inherited from class ome.xml.meta.AbstractOMEXMLMetadata

Constructor Summary

Method Summary

Methods inherited from class ome.xml.meta.AbstractOMEXMLMetadata

Methods inherited from class java.lang.Object

Field Detail

root

model

Constructor Detail

OMEXMLMetadataImpl

Method Detail

createRoot

getRoot

setRoot

dumpXML

resolveReferences

getPixelsBinDataCount

getBooleanAnnotationAnnotationCount

getCommentAnnotationAnnotationCount

getDoubleAnnotationAnnotationCount

getFileAnnotationAnnotationCount

getListAnnotationAnnotationCount

getLongAnnotationAnnotationCount

getMapAnnotationAnnotationCount

getTagAnnotationAnnotationCount

getTermAnnotationAnnotationCount

getTimestampAnnotationAnnotationCount

getXMLAnnotationAnnotationCount

getLightSourceType

getShapeType

getLightSourceAnnotationRefCount

getInstrumentAnnotationRefCount

getObjectiveAnnotationRefCount

getDetectorAnnotationRefCount

getChannelAnnotationRefCount

getPlateAnnotationRefCount

getExperimenterGroupAnnotationRefCount

getScreenAnnotationRefCount

getReagentAnnotationRefCount

getPlaneAnnotationRefCount

getExperimenterAnnotationRefCount

getDichroicAnnotationRefCount

getWellAnnotationRefCount

getFilterAnnotationRefCount

getPlateAcquisitionAnnotationRefCount

getROIAnnotationRefCount

getProjectAnnotationRefCount

getLightPathAnnotationRefCount

getImageAnnotationRefCount

getDatasetAnnotationRefCount

getShapeAnnotationRefCount

getBooleanAnnotationCount

getChannelCount

getCommentAnnotationCount

getDatasetCount

getDatasetRefCount

getDetectorCount

getDichroicCount

getDoubleAnnotationCount

getLightPathEmissionFilterRefCount

getFilterSetEmissionFilterRefCount

getLightPathExcitationFilterRefCount

getFilterSetExcitationFilterRefCount

getExperimentCount

getExperimenterCount

getExperimenterGroupCount

getExperimenterGroupExperimenterRefCount

getFileAnnotationCount

getFilterCount

getFilterSetCount

getImageCount

getDatasetImageRefCount

getInstrumentCount

getLeaderCount

getLightSourceCount

getMicrobeamManipulationLightSourceSettingsCount

getListAnnotationCount

getLongAnnotationCount