MetadataStore (Bio-Formats API)

All Superinterfaces:

BaseMetadata

All Known Subinterfaces:

IMetadata, IMetadata, MetadataStore, OMEXMLMetadata, OMEXMLMetadata

All Known Implementing Classes:

AbstractOMEXMLMetadata, AbstractOMEXMLMetadata, AggregateMetadata, DummyMetadata, DummyMetadata, FilterMetadata, FilterMetadata, OMEXMLMetadataImpl, OMEXMLMetadataImpl
```
public interface MetadataStore
extends BaseMetadata
```
A proxy whose responsibility it is to marshal biological image data into a particular storage medium.
The MetadataStore interface encompasses the metadata that any specific storage medium (file, relational database, etc.) should be expected to store into its backing data model.
The MetadataStore interface goes hand in hand with the MetadataRetrieve interface. Essentially, MetadataRetrieve provides the "getter" methods for a storage medium, and MetadataStore provides the "setter" methods.
Since it often makes sense for a storage medium to implement both interfaces, there is also an IMetadata interface encompassing both MetadataStore and MetadataRetrieve, which reduces the need to cast between object types.
See OMEXMLMetadata for an example implementation.
Important note: It is strongly recommended that applications (e.g., file format readers) using MetadataStore populate information in a linear order. Specifically, iterating over entities from "leftmost" index to "rightmost" index is required for certain MetadataStore implementations such as OMERO's OMEROMetadataStore. For example, when populating Image, Pixels and Plane information, an outer loop should iterate across imageIndex, an inner loop should iterate across pixelsIndex, and an innermost loop should handle planeIndex. For an illustration of the ideal traversal order, see MetadataConverter.convertMetadata(loci.formats.meta.MetadataRetrieve, loci.formats.meta.MetadataStore).

Author:

Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`createRoot()` Create root node.
`MetadataRoot`	`getRoot()` Get the root node of the metadata.
`void`	`setArcAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of Arc.
`void`	`setArcID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of Arc.
`void`	`setArcLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of Arc.
`void`	`setArcManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of Arc.
`void`	`setArcModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of Arc.
`void`	`setArcPower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of Arc.
`void`	`setArcSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of Arc.
`void`	`setArcType(ArcType type, int instrumentIndex, int lightSourceIndex)` Set the Type property of Arc.
`void`	`setBinaryFileFileName(String fileName, int fileAnnotationIndex)` Set the FileName property of BinaryFile.
`void`	`setBinaryFileMIMEType(String mimeType, int fileAnnotationIndex)` Set the MIMEType property of BinaryFile.
`void`	`setBinaryFileSize(NonNegativeLong size, int fileAnnotationIndex)` Set the Size property of BinaryFile.
`void`	`setBinaryOnlyMetadataFile(String metadataFile)` Set the MetadataFile property of BinaryOnly.
`void`	`setBinaryOnlyUUID(String uuid)` Set the UUID property of BinaryOnly.
`void`	`setBooleanAnnotationAnnotationRef(String annotation, int booleanAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of BooleanAnnotation.
`void`	`setBooleanAnnotationAnnotator(String annotator, int booleanAnnotationIndex)` Set the Annotator property of BooleanAnnotation.
`void`	`setBooleanAnnotationDescription(String description, int booleanAnnotationIndex)` Set the Description property of BooleanAnnotation.
`void`	`setBooleanAnnotationID(String id, int booleanAnnotationIndex)` Set the ID property of BooleanAnnotation.
`void`	`setBooleanAnnotationNamespace(String namespace, int booleanAnnotationIndex)` Set the Namespace property of BooleanAnnotation.
`void`	`setBooleanAnnotationValue(Boolean value, int booleanAnnotationIndex)` Set the Value property of BooleanAnnotation.
`void`	`setChannelAcquisitionMode(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)` Set the AcquisitionMode property of Channel.
`void`	`setChannelAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)` Set the AnnotationRef property of Channel.
`void`	`setChannelColor(Color color, int imageIndex, int channelIndex)` Set the Color property of Channel.
`void`	`setChannelContrastMethod(ContrastMethod contrastMethod, int imageIndex, int channelIndex)` Set the ContrastMethod property of Channel.
`void`	`setChannelEmissionWavelength(Length emissionWavelength, int imageIndex, int channelIndex)` Set the EmissionWavelength property of Channel.
`void`	`setChannelExcitationWavelength(Length excitationWavelength, int imageIndex, int channelIndex)` Set the ExcitationWavelength property of Channel.
`void`	`setChannelFilterSetRef(String filterSet, int imageIndex, int channelIndex)` Set the FilterSetRef property of Channel.
`void`	`setChannelFluor(String fluor, int imageIndex, int channelIndex)` Set the Fluor property of Channel.
`void`	`setChannelID(String id, int imageIndex, int channelIndex)` Set the ID property of Channel.
`void`	`setChannelIlluminationType(IlluminationType illuminationType, int imageIndex, int channelIndex)` Set the IlluminationType property of Channel.
`void`	`setChannelLightSourceSettingsAttenuation(PercentFraction attenuation, int imageIndex, int channelIndex)` Set the Attenuation property of LightSourceSettings.
`void`	`setChannelLightSourceSettingsID(String id, int imageIndex, int channelIndex)` Set the ID property of LightSourceSettings.
`void`	`setChannelLightSourceSettingsWavelength(Length wavelength, int imageIndex, int channelIndex)` Set the Wavelength property of LightSourceSettings.
`void`	`setChannelName(String name, int imageIndex, int channelIndex)` Set the Name property of Channel.
`void`	`setChannelNDFilter(Double ndFilter, int imageIndex, int channelIndex)` Set the NDFilter property of Channel.
`void`	`setChannelPinholeSize(Length pinholeSize, int imageIndex, int channelIndex)` Set the PinholeSize property of Channel.
`void`	`setChannelPockelCellSetting(Integer pockelCellSetting, int imageIndex, int channelIndex)` Set the PockelCellSetting property of Channel.
`void`	`setChannelSamplesPerPixel(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)` Set the SamplesPerPixel property of Channel.
`void`	`setCommentAnnotationAnnotationRef(String annotation, int commentAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of CommentAnnotation.
`void`	`setCommentAnnotationAnnotator(String annotator, int commentAnnotationIndex)` Set the Annotator property of CommentAnnotation.
`void`	`setCommentAnnotationDescription(String description, int commentAnnotationIndex)` Set the Description property of CommentAnnotation.
`void`	`setCommentAnnotationID(String id, int commentAnnotationIndex)` Set the ID property of CommentAnnotation.
`void`	`setCommentAnnotationNamespace(String namespace, int commentAnnotationIndex)` Set the Namespace property of CommentAnnotation.
`void`	`setCommentAnnotationValue(String value, int commentAnnotationIndex)` Set the Value property of CommentAnnotation.
`void`	`setDatasetAnnotationRef(String annotation, int datasetIndex, int annotationRefIndex)` Set the AnnotationRef property of Dataset.
`void`	`setDatasetDescription(String description, int datasetIndex)` Set the Description property of Dataset.
`void`	`setDatasetExperimenterGroupRef(String experimenterGroup, int datasetIndex)` Set the ExperimenterGroupRef property of Dataset.
`void`	`setDatasetExperimenterRef(String experimenter, int datasetIndex)` Set the ExperimenterRef property of Dataset.
`void`	`setDatasetID(String id, int datasetIndex)` Set the ID property of Dataset.
`void`	`setDatasetImageRef(String image, int datasetIndex, int imageRefIndex)` Set the ImageRef property of Dataset.
`void`	`setDatasetName(String name, int datasetIndex)` Set the Name property of Dataset.
`void`	`setDetectorAmplificationGain(Double amplificationGain, int instrumentIndex, int detectorIndex)` Set the AmplificationGain property of Detector.
`void`	`setDetectorAnnotationRef(String annotation, int instrumentIndex, int detectorIndex, int annotationRefIndex)` Set the AnnotationRef property of Detector.
`void`	`setDetectorGain(Double gain, int instrumentIndex, int detectorIndex)` Set the Gain property of Detector.
`void`	`setDetectorID(String id, int instrumentIndex, int detectorIndex)` Set the ID property of Detector.
`void`	`setDetectorLotNumber(String lotNumber, int instrumentIndex, int detectorIndex)` Set the LotNumber property of Detector.
`void`	`setDetectorManufacturer(String manufacturer, int instrumentIndex, int detectorIndex)` Set the Manufacturer property of Detector.
`void`	`setDetectorModel(String model, int instrumentIndex, int detectorIndex)` Set the Model property of Detector.
`void`	`setDetectorOffset(Double offset, int instrumentIndex, int detectorIndex)` Set the Offset property of Detector.
`void`	`setDetectorSerialNumber(String serialNumber, int instrumentIndex, int detectorIndex)` Set the SerialNumber property of Detector.
`void`	`setDetectorSettingsBinning(Binning binning, int imageIndex, int channelIndex)` Set the Binning property of DetectorSettings.
`void`	`setDetectorSettingsGain(Double gain, int imageIndex, int channelIndex)` Set the Gain property of DetectorSettings.
`void`	`setDetectorSettingsID(String id, int imageIndex, int channelIndex)` Set the ID property of DetectorSettings.
`void`	`setDetectorSettingsIntegration(PositiveInteger integration, int imageIndex, int channelIndex)` Set the Integration property of DetectorSettings.
`void`	`setDetectorSettingsOffset(Double offset, int imageIndex, int channelIndex)` Set the Offset property of DetectorSettings.
`void`	`setDetectorSettingsReadOutRate(Frequency readOutRate, int imageIndex, int channelIndex)` Set the ReadOutRate property of DetectorSettings.
`void`	`setDetectorSettingsVoltage(ElectricPotential voltage, int imageIndex, int channelIndex)` Set the Voltage property of DetectorSettings.
`void`	`setDetectorSettingsZoom(Double zoom, int imageIndex, int channelIndex)` Set the Zoom property of DetectorSettings.
`void`	`setDetectorType(DetectorType type, int instrumentIndex, int detectorIndex)` Set the Type property of Detector.
`void`	`setDetectorVoltage(ElectricPotential voltage, int instrumentIndex, int detectorIndex)` Set the Voltage property of Detector.
`void`	`setDetectorZoom(Double zoom, int instrumentIndex, int detectorIndex)` Set the Zoom property of Detector.
`void`	`setDichroicAnnotationRef(String annotation, int instrumentIndex, int dichroicIndex, int annotationRefIndex)` Set the AnnotationRef property of Dichroic.
`void`	`setDichroicID(String id, int instrumentIndex, int dichroicIndex)` Set the ID property of Dichroic.
`void`	`setDichroicLotNumber(String lotNumber, int instrumentIndex, int dichroicIndex)` Set the LotNumber property of Dichroic.
`void`	`setDichroicManufacturer(String manufacturer, int instrumentIndex, int dichroicIndex)` Set the Manufacturer property of Dichroic.
`void`	`setDichroicModel(String model, int instrumentIndex, int dichroicIndex)` Set the Model property of Dichroic.
`void`	`setDichroicSerialNumber(String serialNumber, int instrumentIndex, int dichroicIndex)` Set the SerialNumber property of Dichroic.
`void`	`setDoubleAnnotationAnnotationRef(String annotation, int doubleAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of DoubleAnnotation.
`void`	`setDoubleAnnotationAnnotator(String annotator, int doubleAnnotationIndex)` Set the Annotator property of DoubleAnnotation.
`void`	`setDoubleAnnotationDescription(String description, int doubleAnnotationIndex)` Set the Description property of DoubleAnnotation.
`void`	`setDoubleAnnotationID(String id, int doubleAnnotationIndex)` Set the ID property of DoubleAnnotation.
`void`	`setDoubleAnnotationNamespace(String namespace, int doubleAnnotationIndex)` Set the Namespace property of DoubleAnnotation.
`void`	`setDoubleAnnotationValue(Double value, int doubleAnnotationIndex)` Set the Value property of DoubleAnnotation.
`void`	`setEllipseAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Ellipse.
`void`	`setEllipseFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Ellipse.
`void`	`setEllipseFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Ellipse.
`void`	`setEllipseFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Ellipse.
`void`	`setEllipseFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Ellipse.
`void`	`setEllipseFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Ellipse.
`void`	`setEllipseID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Ellipse.
`void`	`setEllipseLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Ellipse.
`void`	`setEllipseLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Ellipse.
`void`	`setEllipseRadiusX(Double radiusX, int ROIIndex, int shapeIndex)` Set the RadiusX property of Ellipse.
`void`	`setEllipseRadiusY(Double radiusY, int ROIIndex, int shapeIndex)` Set the RadiusY property of Ellipse.
`void`	`setEllipseStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Ellipse.
`void`	`setEllipseStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Ellipse.
`void`	`setEllipseStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Ellipse.
`void`	`setEllipseText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Ellipse.
`void`	`setEllipseTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Ellipse.
`void`	`setEllipseTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Ellipse.
`void`	`setEllipseTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Ellipse.
`void`	`setEllipseTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Ellipse.
`void`	`setEllipseVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Ellipse.
`void`	`setEllipseX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Ellipse.
`void`	`setEllipseY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Ellipse.
`void`	`setExperimentDescription(String description, int experimentIndex)` Set the Description property of Experiment.
`void`	`setExperimenterAnnotationRef(String annotation, int experimenterIndex, int annotationRefIndex)` Set the AnnotationRef property of Experimenter.
`void`	`setExperimenterEmail(String email, int experimenterIndex)` Set the Email property of Experimenter.
`void`	`setExperimenterFirstName(String firstName, int experimenterIndex)` Set the FirstName property of Experimenter.
`void`	`setExperimenterGroupAnnotationRef(String annotation, int experimenterGroupIndex, int annotationRefIndex)` Set the AnnotationRef property of ExperimenterGroup.
`void`	`setExperimenterGroupDescription(String description, int experimenterGroupIndex)` Set the Description property of ExperimenterGroup.
`void`	`setExperimenterGroupExperimenterRef(String experimenter, int experimenterGroupIndex, int experimenterRefIndex)` Set the ExperimenterRef property of ExperimenterGroup.
`void`	`setExperimenterGroupID(String id, int experimenterGroupIndex)` Set the ID property of ExperimenterGroup.
`void`	`setExperimenterGroupLeader(String leader, int experimenterGroupIndex, int leaderIndex)` Set the Leader property of ExperimenterGroup.
`void`	`setExperimenterGroupName(String name, int experimenterGroupIndex)` Set the Name property of ExperimenterGroup.
`void`	`setExperimenterID(String id, int experimenterIndex)` Set the ID property of Experimenter.
`void`	`setExperimenterInstitution(String institution, int experimenterIndex)` Set the Institution property of Experimenter.
`void`	`setExperimenterLastName(String lastName, int experimenterIndex)` Set the LastName property of Experimenter.
`void`	`setExperimenterMiddleName(String middleName, int experimenterIndex)` Set the MiddleName property of Experimenter.
`void`	`setExperimenterUserName(String userName, int experimenterIndex)` Set the UserName property of Experimenter.
`void`	`setExperimentExperimenterRef(String experimenter, int experimentIndex)` Set the ExperimenterRef property of Experiment.
`void`	`setExperimentID(String id, int experimentIndex)` Set the ID property of Experiment.
`void`	`setExperimentType(ExperimentType type, int experimentIndex)` Set the Type property of Experiment.
`void`	`setFilamentAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of Filament.
`void`	`setFilamentID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of Filament.
`void`	`setFilamentLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of Filament.
`void`	`setFilamentManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of Filament.
`void`	`setFilamentModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of Filament.
`void`	`setFilamentPower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of Filament.
`void`	`setFilamentSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of Filament.
`void`	`setFilamentType(FilamentType type, int instrumentIndex, int lightSourceIndex)` Set the Type property of Filament.
`void`	`setFileAnnotationAnnotationRef(String annotation, int fileAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of FileAnnotation.
`void`	`setFileAnnotationAnnotator(String annotator, int fileAnnotationIndex)` Set the Annotator property of FileAnnotation.
`void`	`setFileAnnotationDescription(String description, int fileAnnotationIndex)` Set the Description property of FileAnnotation.
`void`	`setFileAnnotationID(String id, int fileAnnotationIndex)` Set the ID property of FileAnnotation.
`void`	`setFileAnnotationNamespace(String namespace, int fileAnnotationIndex)` Set the Namespace property of FileAnnotation.
`void`	`setFilterAnnotationRef(String annotation, int instrumentIndex, int filterIndex, int annotationRefIndex)` Set the AnnotationRef property of Filter.
`void`	`setFilterFilterWheel(String filterWheel, int instrumentIndex, int filterIndex)` Set the FilterWheel property of Filter.
`void`	`setFilterID(String id, int instrumentIndex, int filterIndex)` Set the ID property of Filter.
`void`	`setFilterLotNumber(String lotNumber, int instrumentIndex, int filterIndex)` Set the LotNumber property of Filter.
`void`	`setFilterManufacturer(String manufacturer, int instrumentIndex, int filterIndex)` Set the Manufacturer property of Filter.
`void`	`setFilterModel(String model, int instrumentIndex, int filterIndex)` Set the Model property of Filter.
`void`	`setFilterSerialNumber(String serialNumber, int instrumentIndex, int filterIndex)` Set the SerialNumber property of Filter.
`void`	`setFilterSetDichroicRef(String dichroic, int instrumentIndex, int filterSetIndex)` Set the DichroicRef property of FilterSet.
`void`	`setFilterSetEmissionFilterRef(String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)` Set the EmissionFilterRef property of FilterSet.
`void`	`setFilterSetExcitationFilterRef(String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)` Set the ExcitationFilterRef property of FilterSet.
`void`	`setFilterSetID(String id, int instrumentIndex, int filterSetIndex)` Set the ID property of FilterSet.
`void`	`setFilterSetLotNumber(String lotNumber, int instrumentIndex, int filterSetIndex)` Set the LotNumber property of FilterSet.
`void`	`setFilterSetManufacturer(String manufacturer, int instrumentIndex, int filterSetIndex)` Set the Manufacturer property of FilterSet.
`void`	`setFilterSetModel(String model, int instrumentIndex, int filterSetIndex)` Set the Model property of FilterSet.
`void`	`setFilterSetSerialNumber(String serialNumber, int instrumentIndex, int filterSetIndex)` Set the SerialNumber property of FilterSet.
`void`	`setFilterType(FilterType type, int instrumentIndex, int filterIndex)` Set the Type property of Filter.
`void`	`setGenericExcitationSourceAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of GenericExcitationSource.
`void`	`setGenericExcitationSourceID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of GenericExcitationSource.
`void`	`setGenericExcitationSourceLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of GenericExcitationSource.
`void`	`setGenericExcitationSourceManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of GenericExcitationSource.
`void`	`setGenericExcitationSourceMap(List<MapPair> map, int instrumentIndex, int lightSourceIndex)` Set the MapAnnotation values of a GenericExcitationSource.
`void`	`setGenericExcitationSourceModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of GenericExcitationSource.
`void`	`setGenericExcitationSourcePower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of GenericExcitationSource.
`void`	`setGenericExcitationSourceSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of GenericExcitationSource.
`void`	`setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex)` Set the AcquisitionDate property of Image.
`void`	`setImageAnnotationRef(String annotation, int imageIndex, int annotationRefIndex)` Set the AnnotationRef property of Image.
`void`	`setImageDescription(String description, int imageIndex)` Set the Description property of Image.
`void`	`setImageExperimenterGroupRef(String experimenterGroup, int imageIndex)` Set the ExperimenterGroupRef property of Image.
`void`	`setImageExperimenterRef(String experimenter, int imageIndex)` Set the ExperimenterRef property of Image.
`void`	`setImageExperimentRef(String experiment, int imageIndex)` Set the ExperimentRef property of Image.
`void`	`setImageID(String id, int imageIndex)` Set the ID property of Image.
`void`	`setImageInstrumentRef(String instrument, int imageIndex)` Set the InstrumentRef property of Image.
`void`	`setImageMicrobeamManipulationRef(String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)` Set the MicrobeamManipulationRef property of Image.
`void`	`setImageName(String name, int imageIndex)` Set the Name property of Image.
`void`	`setImageROIRef(String roi, int imageIndex, int ROIRefIndex)` Set the ROIRef property of Image.
`void`	`setImagingEnvironmentAirPressure(Pressure airPressure, int imageIndex)` Set the AirPressure property of ImagingEnvironment.
`void`	`setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex)` Set the CO2Percent property of ImagingEnvironment.
`void`	`setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex)` Set the Humidity property of ImagingEnvironment.
`void`	`setImagingEnvironmentMap(List<MapPair> map, int imageIndex)` Set the MapAnnotation values of an ImagingEnvironment.
`void`	`setImagingEnvironmentTemperature(Temperature temperature, int imageIndex)` Set the Temperature property of ImagingEnvironment.
`void`	`setInstrumentAnnotationRef(String annotation, int instrumentIndex, int annotationRefIndex)` Set the AnnotationRef property of Instrument.
`void`	`setInstrumentID(String id, int instrumentIndex)` Set the ID property of Instrument.
`void`	`setLabelAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Label.
`void`	`setLabelFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Label.
`void`	`setLabelFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Label.
`void`	`setLabelFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Label.
`void`	`setLabelFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Label.
`void`	`setLabelFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Label.
`void`	`setLabelID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Label.
`void`	`setLabelLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Label.
`void`	`setLabelLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Label.
`void`	`setLabelStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Label.
`void`	`setLabelStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Label.
`void`	`setLabelStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Label.
`void`	`setLabelText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Label.
`void`	`setLabelTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Label.
`void`	`setLabelTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Label.
`void`	`setLabelTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Label.
`void`	`setLabelTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Label.
`void`	`setLabelVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Label.
`void`	`setLabelX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Label.
`void`	`setLabelY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Label.
`void`	`setLaserAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of Laser.
`void`	`setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)` Set the FrequencyMultiplication property of Laser.
`void`	`setLaserID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of Laser.
`void`	`setLaserLaserMedium(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)` Set the LaserMedium property of Laser.
`void`	`setLaserLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of Laser.
`void`	`setLaserManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of Laser.
`void`	`setLaserModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of Laser.
`void`	`setLaserPockelCell(Boolean pockelCell, int instrumentIndex, int lightSourceIndex)` Set the PockelCell property of Laser.
`void`	`setLaserPower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of Laser.
`void`	`setLaserPulse(Pulse pulse, int instrumentIndex, int lightSourceIndex)` Set the Pulse property of Laser.
`void`	`setLaserPump(String pump, int instrumentIndex, int lightSourceIndex)` Set the Pump property of Laser.
`void`	`setLaserRepetitionRate(Frequency repetitionRate, int instrumentIndex, int lightSourceIndex)` Set the RepetitionRate property of Laser.
`void`	`setLaserSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of Laser.
`void`	`setLaserTuneable(Boolean tuneable, int instrumentIndex, int lightSourceIndex)` Set the Tuneable property of Laser.
`void`	`setLaserType(LaserType type, int instrumentIndex, int lightSourceIndex)` Set the Type property of Laser.
`void`	`setLaserWavelength(Length wavelength, int instrumentIndex, int lightSourceIndex)` Set the Wavelength property of Laser.
`void`	`setLightEmittingDiodeAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)` Set the AnnotationRef property of LightEmittingDiode.
`void`	`setLightEmittingDiodeID(String id, int instrumentIndex, int lightSourceIndex)` Set the ID property of LightEmittingDiode.
`void`	`setLightEmittingDiodeLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)` Set the LotNumber property of LightEmittingDiode.
`void`	`setLightEmittingDiodeManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)` Set the Manufacturer property of LightEmittingDiode.
`void`	`setLightEmittingDiodeModel(String model, int instrumentIndex, int lightSourceIndex)` Set the Model property of LightEmittingDiode.
`void`	`setLightEmittingDiodePower(Power power, int instrumentIndex, int lightSourceIndex)` Set the Power property of LightEmittingDiode.
`void`	`setLightEmittingDiodeSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)` Set the SerialNumber property of LightEmittingDiode.
`void`	`setLightPathAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)` Set the AnnotationRef property of LightPath.
`void`	`setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex)` Set the DichroicRef property of LightPath.
`void`	`setLightPathEmissionFilterRef(String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)` Set the EmissionFilterRef property of LightPath.
`void`	`setLightPathExcitationFilterRef(String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)` Set the ExcitationFilterRef property of LightPath.
`void`	`setLineAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Line.
`void`	`setLineFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Line.
`void`	`setLineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Line.
`void`	`setLineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Line.
`void`	`setLineFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Line.
`void`	`setLineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Line.
`void`	`setLineID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Line.
`void`	`setLineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Line.
`void`	`setLineLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Line.
`void`	`setLineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)` Set the MarkerEnd property of Line.
`void`	`setLineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)` Set the MarkerStart property of Line.
`void`	`setLineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Line.
`void`	`setLineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Line.
`void`	`setLineStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Line.
`void`	`setLineText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Line.
`void`	`setLineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Line.
`void`	`setLineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Line.
`void`	`setLineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Line.
`void`	`setLineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Line.
`void`	`setLineVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Line.
`void`	`setLineX1(Double x1, int ROIIndex, int shapeIndex)` Set the X1 property of Line.
`void`	`setLineX2(Double x2, int ROIIndex, int shapeIndex)` Set the X2 property of Line.
`void`	`setLineY1(Double y1, int ROIIndex, int shapeIndex)` Set the Y1 property of Line.
`void`	`setLineY2(Double y2, int ROIIndex, int shapeIndex)` Set the Y2 property of Line.
`void`	`setListAnnotationAnnotationRef(String annotation, int listAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of ListAnnotation.
`void`	`setListAnnotationAnnotator(String annotator, int listAnnotationIndex)` Set the Annotator property of ListAnnotation.
`void`	`setListAnnotationDescription(String description, int listAnnotationIndex)` Set the Description property of ListAnnotation.
`void`	`setListAnnotationID(String id, int listAnnotationIndex)` Set the ID property of ListAnnotation.
`void`	`setListAnnotationNamespace(String namespace, int listAnnotationIndex)` Set the Namespace property of ListAnnotation.
`void`	`setLongAnnotationAnnotationRef(String annotation, int longAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of LongAnnotation.
`void`	`setLongAnnotationAnnotator(String annotator, int longAnnotationIndex)` Set the Annotator property of LongAnnotation.
`void`	`setLongAnnotationDescription(String description, int longAnnotationIndex)` Set the Description property of LongAnnotation.
`void`	`setLongAnnotationID(String id, int longAnnotationIndex)` Set the ID property of LongAnnotation.
`void`	`setLongAnnotationNamespace(String namespace, int longAnnotationIndex)` Set the Namespace property of LongAnnotation.
`void`	`setLongAnnotationValue(Long value, int longAnnotationIndex)` Set the Value property of LongAnnotation.
`void`	`setMapAnnotationAnnotationRef(String annotation, int mapAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of MapAnnotation.
`void`	`setMapAnnotationAnnotator(String annotator, int mapAnnotationIndex)` Set the Annotator property of MapAnnotation.
`void`	`setMapAnnotationDescription(String description, int mapAnnotationIndex)` Set the Description property of MapAnnotation.
`void`	`setMapAnnotationID(String id, int mapAnnotationIndex)` Set the ID property of MapAnnotation.
`void`	`setMapAnnotationNamespace(String namespace, int mapAnnotationIndex)` Set the Namespace property of MapAnnotation.
`void`	`setMapAnnotationValue(List<MapPair> value, int mapAnnotationIndex)` Set the values of a MapAnnotation.
`void`	`setMaskAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Mask.
`void`	`setMaskBinData(byte[] binData, int ROIIndex, int shapeIndex)` Set the BinData property of Mask.
`void`	`setMaskFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Mask.
`void`	`setMaskFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Mask.
`void`	`setMaskFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Mask.
`void`	`setMaskFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Mask.
`void`	`setMaskFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Mask.
`void`	`setMaskHeight(Double height, int ROIIndex, int shapeIndex)` Set the Height property of Mask.
`void`	`setMaskID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Mask.
`void`	`setMaskLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Mask.
`void`	`setMaskLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Mask.
`void`	`setMaskStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Mask.
`void`	`setMaskStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Mask.
`void`	`setMaskStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Mask.
`void`	`setMaskText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Mask.
`void`	`setMaskTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Mask.
`void`	`setMaskTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Mask.
`void`	`setMaskTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Mask.
`void`	`setMaskTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Mask.
`void`	`setMaskVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Mask.
`void`	`setMaskWidth(Double width, int ROIIndex, int shapeIndex)` Set the Width property of Mask.
`void`	`setMaskX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Mask.
`void`	`setMaskY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Mask.
`void`	`setMicrobeamManipulationDescription(String description, int experimentIndex, int microbeamManipulationIndex)` Set the Description property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationExperimenterRef(String experimenter, int experimentIndex, int microbeamManipulationIndex)` Set the ExperimenterRef property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationID(String id, int experimentIndex, int microbeamManipulationIndex)` Set the ID property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Set the Attenuation property of LightSourceSettings.
`void`	`setMicrobeamManipulationLightSourceSettingsID(String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Set the ID property of LightSourceSettings.
`void`	`setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)` Set the Wavelength property of LightSourceSettings.
`void`	`setMicrobeamManipulationROIRef(String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)` Set the ROIRef property of MicrobeamManipulation.
`void`	`setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)` Set the Type property of MicrobeamManipulation.
`void`	`setMicroscopeLotNumber(String lotNumber, int instrumentIndex)` Set the LotNumber property of Microscope.
`void`	`setMicroscopeManufacturer(String manufacturer, int instrumentIndex)` Set the Manufacturer property of Microscope.
`void`	`setMicroscopeModel(String model, int instrumentIndex)` Set the Model property of Microscope.
`void`	`setMicroscopeSerialNumber(String serialNumber, int instrumentIndex)` Set the SerialNumber property of Microscope.
`void`	`setMicroscopeType(MicroscopeType type, int instrumentIndex)` Set the Type property of Microscope.
`void`	`setObjectiveAnnotationRef(String annotation, int instrumentIndex, int objectiveIndex, int annotationRefIndex)` Set the AnnotationRef property of Objective.
`void`	`setObjectiveCalibratedMagnification(Double calibratedMagnification, int instrumentIndex, int objectiveIndex)` Set the CalibratedMagnification property of Objective.
`void`	`setObjectiveCorrection(Correction correction, int instrumentIndex, int objectiveIndex)` Set the Correction property of Objective.
`void`	`setObjectiveID(String id, int instrumentIndex, int objectiveIndex)` Set the ID property of Objective.
`void`	`setObjectiveImmersion(Immersion immersion, int instrumentIndex, int objectiveIndex)` Set the Immersion property of Objective.
`void`	`setObjectiveIris(Boolean iris, int instrumentIndex, int objectiveIndex)` Set the Iris property of Objective.
`void`	`setObjectiveLensNA(Double lensNA, int instrumentIndex, int objectiveIndex)` Set the LensNA property of Objective.
`void`	`setObjectiveLotNumber(String lotNumber, int instrumentIndex, int objectiveIndex)` Set the LotNumber property of Objective.
`void`	`setObjectiveManufacturer(String manufacturer, int instrumentIndex, int objectiveIndex)` Set the Manufacturer property of Objective.
`void`	`setObjectiveModel(String model, int instrumentIndex, int objectiveIndex)` Set the Model property of Objective.
`void`	`setObjectiveNominalMagnification(Double nominalMagnification, int instrumentIndex, int objectiveIndex)` Set the NominalMagnification property of Objective.
`void`	`setObjectiveSerialNumber(String serialNumber, int instrumentIndex, int objectiveIndex)` Set the SerialNumber property of Objective.
`void`	`setObjectiveSettingsCorrectionCollar(Double correctionCollar, int imageIndex)` Set the CorrectionCollar property of ObjectiveSettings.
`void`	`setObjectiveSettingsID(String id, int imageIndex)` Set the ID property of ObjectiveSettings.
`void`	`setObjectiveSettingsMedium(Medium medium, int imageIndex)` Set the Medium property of ObjectiveSettings.
`void`	`setObjectiveSettingsRefractiveIndex(Double refractiveIndex, int imageIndex)` Set the RefractiveIndex property of ObjectiveSettings.
`void`	`setObjectiveWorkingDistance(Length workingDistance, int instrumentIndex, int objectiveIndex)` Set the WorkingDistance property of Objective.
`void`	`setPixelsBigEndian(Boolean bigEndian, int imageIndex)` Set the BigEndian property of Pixels.
`void`	`setPixelsBinDataBigEndian(Boolean bigEndian, int imageIndex, int binDataIndex)` Set the BigEndian property of Pixels.
`void`	`setPixelsDimensionOrder(DimensionOrder dimensionOrder, int imageIndex)` Set the DimensionOrder property of Pixels.
`void`	`setPixelsID(String id, int imageIndex)` Set the ID property of Pixels.
`void`	`setPixelsInterleaved(Boolean interleaved, int imageIndex)` Set the Interleaved property of Pixels.
`void`	`setPixelsPhysicalSizeX(Length physicalSizeX, int imageIndex)` Set the PhysicalSizeX property of Pixels.
`void`	`setPixelsPhysicalSizeY(Length physicalSizeY, int imageIndex)` Set the PhysicalSizeY property of Pixels.
`void`	`setPixelsPhysicalSizeZ(Length physicalSizeZ, int imageIndex)` Set the PhysicalSizeZ property of Pixels.
`void`	`setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex)` Set the SignificantBits property of Pixels.
`void`	`setPixelsSizeC(PositiveInteger sizeC, int imageIndex)` Set the SizeC property of Pixels.
`void`	`setPixelsSizeT(PositiveInteger sizeT, int imageIndex)` Set the SizeT property of Pixels.
`void`	`setPixelsSizeX(PositiveInteger sizeX, int imageIndex)` Set the SizeX property of Pixels.
`void`	`setPixelsSizeY(PositiveInteger sizeY, int imageIndex)` Set the SizeY property of Pixels.
`void`	`setPixelsSizeZ(PositiveInteger sizeZ, int imageIndex)` Set the SizeZ property of Pixels.
`void`	`setPixelsTimeIncrement(Time timeIncrement, int imageIndex)` Set the TimeIncrement property of Pixels.
`void`	`setPixelsType(PixelType type, int imageIndex)` Set the Type property of Pixels.
`void`	`setPlaneAnnotationRef(String annotation, int imageIndex, int planeIndex, int annotationRefIndex)` Set the AnnotationRef property of Plane.
`void`	`setPlaneDeltaT(Time deltaT, int imageIndex, int planeIndex)` Set the DeltaT property of Plane.
`void`	`setPlaneExposureTime(Time exposureTime, int imageIndex, int planeIndex)` Set the ExposureTime property of Plane.
`void`	`setPlaneHashSHA1(String hashSHA1, int imageIndex, int planeIndex)` Set the HashSHA1 property of Plane.
`void`	`setPlanePositionX(Length positionX, int imageIndex, int planeIndex)` Set the PositionX property of Plane.
`void`	`setPlanePositionY(Length positionY, int imageIndex, int planeIndex)` Set the PositionY property of Plane.
`void`	`setPlanePositionZ(Length positionZ, int imageIndex, int planeIndex)` Set the PositionZ property of Plane.
`void`	`setPlaneTheC(NonNegativeInteger theC, int imageIndex, int planeIndex)` Set the TheC property of Plane.
`void`	`setPlaneTheT(NonNegativeInteger theT, int imageIndex, int planeIndex)` Set the TheT property of Plane.
`void`	`setPlaneTheZ(NonNegativeInteger theZ, int imageIndex, int planeIndex)` Set the TheZ property of Plane.
`void`	`setPlateAcquisitionAnnotationRef(String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)` Set the AnnotationRef property of PlateAcquisition.
`void`	`setPlateAcquisitionDescription(String description, int plateIndex, int plateAcquisitionIndex)` Set the Description property of PlateAcquisition.
`void`	`setPlateAcquisitionEndTime(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)` Set the EndTime property of PlateAcquisition.
`void`	`setPlateAcquisitionID(String id, int plateIndex, int plateAcquisitionIndex)` Set the ID property of PlateAcquisition.
`void`	`setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)` Set the MaximumFieldCount property of PlateAcquisition.
`void`	`setPlateAcquisitionName(String name, int plateIndex, int plateAcquisitionIndex)` Set the Name property of PlateAcquisition.
`void`	`setPlateAcquisitionStartTime(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)` Set the StartTime property of PlateAcquisition.
`void`	`setPlateAcquisitionWellSampleRef(String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)` Set the WellSampleRef property of PlateAcquisition.
`void`	`setPlateAnnotationRef(String annotation, int plateIndex, int annotationRefIndex)` Set the AnnotationRef property of Plate.
`void`	`setPlateColumnNamingConvention(NamingConvention columnNamingConvention, int plateIndex)` Set the ColumnNamingConvention property of Plate.
`void`	`setPlateColumns(PositiveInteger columns, int plateIndex)` Set the Columns property of Plate.
`void`	`setPlateDescription(String description, int plateIndex)` Set the Description property of Plate.
`void`	`setPlateExternalIdentifier(String externalIdentifier, int plateIndex)` Set the ExternalIdentifier property of Plate.
`void`	`setPlateFieldIndex(NonNegativeInteger fieldIndex, int plateIndex)` Set the FieldIndex property of Plate.
`void`	`setPlateID(String id, int plateIndex)` Set the ID property of Plate.
`void`	`setPlateName(String name, int plateIndex)` Set the Name property of Plate.
`void`	`setPlateRowNamingConvention(NamingConvention rowNamingConvention, int plateIndex)` Set the RowNamingConvention property of Plate.
`void`	`setPlateRows(PositiveInteger rows, int plateIndex)` Set the Rows property of Plate.
`void`	`setPlateStatus(String status, int plateIndex)` Set the Status property of Plate.
`void`	`setPlateWellOriginX(Length wellOriginX, int plateIndex)` Set the WellOriginX property of Plate.
`void`	`setPlateWellOriginY(Length wellOriginY, int plateIndex)` Set the WellOriginY property of Plate.
`void`	`setPointAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Point.
`void`	`setPointFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Point.
`void`	`setPointFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Point.
`void`	`setPointFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Point.
`void`	`setPointFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Point.
`void`	`setPointFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Point.
`void`	`setPointID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Point.
`void`	`setPointLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Point.
`void`	`setPointLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Point.
`void`	`setPointStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Point.
`void`	`setPointStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Point.
`void`	`setPointStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Point.
`void`	`setPointText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Point.
`void`	`setPointTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Point.
`void`	`setPointTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Point.
`void`	`setPointTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Point.
`void`	`setPointTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Point.
`void`	`setPointVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Point.
`void`	`setPointX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Point.
`void`	`setPointY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Point.
`void`	`setPolygonAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Polygon.
`void`	`setPolygonFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Polygon.
`void`	`setPolygonFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Polygon.
`void`	`setPolygonFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Polygon.
`void`	`setPolygonFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Polygon.
`void`	`setPolygonFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Polygon.
`void`	`setPolygonID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Polygon.
`void`	`setPolygonLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Polygon.
`void`	`setPolygonLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Polygon.
`void`	`setPolygonPoints(String points, int ROIIndex, int shapeIndex)` Set the Points property of Polygon.
`void`	`setPolygonStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Polygon.
`void`	`setPolygonStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Polygon.
`void`	`setPolygonStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Polygon.
`void`	`setPolygonText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Polygon.
`void`	`setPolygonTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Polygon.
`void`	`setPolygonTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Polygon.
`void`	`setPolygonTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Polygon.
`void`	`setPolygonTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Polygon.
`void`	`setPolygonVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Polygon.
`void`	`setPolylineAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Polyline.
`void`	`setPolylineFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Polyline.
`void`	`setPolylineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Polyline.
`void`	`setPolylineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Polyline.
`void`	`setPolylineFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Polyline.
`void`	`setPolylineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Polyline.
`void`	`setPolylineID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Polyline.
`void`	`setPolylineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Polyline.
`void`	`setPolylineLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Polyline.
`void`	`setPolylineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)` Set the MarkerEnd property of Polyline.
`void`	`setPolylineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)` Set the MarkerStart property of Polyline.
`void`	`setPolylinePoints(String points, int ROIIndex, int shapeIndex)` Set the Points property of Polyline.
`void`	`setPolylineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Polyline.
`void`	`setPolylineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Polyline.
`void`	`setPolylineStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Polyline.
`void`	`setPolylineText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Polyline.
`void`	`setPolylineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Polyline.
`void`	`setPolylineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Polyline.
`void`	`setPolylineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Polyline.
`void`	`setPolylineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Polyline.
`void`	`setPolylineVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Polyline.
`void`	`setProjectAnnotationRef(String annotation, int projectIndex, int annotationRefIndex)` Set the AnnotationRef property of Project.
`void`	`setProjectDatasetRef(String dataset, int projectIndex, int datasetRefIndex)` Set the DatasetRef property of Project.
`void`	`setProjectDescription(String description, int projectIndex)` Set the Description property of Project.
`void`	`setProjectExperimenterGroupRef(String experimenterGroup, int projectIndex)` Set the ExperimenterGroupRef property of Project.
`void`	`setProjectExperimenterRef(String experimenter, int projectIndex)` Set the ExperimenterRef property of Project.
`void`	`setProjectID(String id, int projectIndex)` Set the ID property of Project.
`void`	`setProjectName(String name, int projectIndex)` Set the Name property of Project.
`void`	`setReagentAnnotationRef(String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)` Set the AnnotationRef property of Reagent.
`void`	`setReagentDescription(String description, int screenIndex, int reagentIndex)` Set the Description property of Reagent.
`void`	`setReagentID(String id, int screenIndex, int reagentIndex)` Set the ID property of Reagent.
`void`	`setReagentName(String name, int screenIndex, int reagentIndex)` Set the Name property of Reagent.
`void`	`setReagentReagentIdentifier(String reagentIdentifier, int screenIndex, int reagentIndex)` Set the ReagentIdentifier property of Reagent.
`void`	`setRectangleAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)` Set the AnnotationRef property of Rectangle.
`void`	`setRectangleFillColor(Color fillColor, int ROIIndex, int shapeIndex)` Set the FillColor property of Rectangle.
`void`	`setRectangleFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)` Set the FillRule property of Rectangle.
`void`	`setRectangleFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)` Set the FontFamily property of Rectangle.
`void`	`setRectangleFontSize(Length fontSize, int ROIIndex, int shapeIndex)` Set the FontSize property of Rectangle.
`void`	`setRectangleFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)` Set the FontStyle property of Rectangle.
`void`	`setRectangleHeight(Double height, int ROIIndex, int shapeIndex)` Set the Height property of Rectangle.
`void`	`setRectangleID(String id, int ROIIndex, int shapeIndex)` Set the ID property of Rectangle.
`void`	`setRectangleLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)` Set the LineCap property of Rectangle.
`void`	`setRectangleLocked(Boolean locked, int ROIIndex, int shapeIndex)` Set the Locked property of Rectangle.
`void`	`setRectangleStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)` Set the StrokeColor property of Rectangle.
`void`	`setRectangleStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)` Set the StrokeDashArray property of Rectangle.
`void`	`setRectangleStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)` Set the StrokeWidth property of Rectangle.
`void`	`setRectangleText(String text, int ROIIndex, int shapeIndex)` Set the Text property of Rectangle.
`void`	`setRectangleTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)` Set the TheC property of Rectangle.
`void`	`setRectangleTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)` Set the TheT property of Rectangle.
`void`	`setRectangleTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)` Set the TheZ property of Rectangle.
`void`	`setRectangleTransform(AffineTransform transform, int ROIIndex, int shapeIndex)` Set the Transform property of Rectangle.
`void`	`setRectangleVisible(Boolean visible, int ROIIndex, int shapeIndex)` Set the Visible property of Rectangle.
`void`	`setRectangleWidth(Double width, int ROIIndex, int shapeIndex)` Set the Width property of Rectangle.
`void`	`setRectangleX(Double x, int ROIIndex, int shapeIndex)` Set the X property of Rectangle.
`void`	`setRectangleY(Double y, int ROIIndex, int shapeIndex)` Set the Y property of Rectangle.
`void`	`setRightsRightsHeld(String rightsHeld)` Set the RightsHeld property of Rights.
`void`	`setRightsRightsHolder(String rightsHolder)` Set the RightsHolder property of Rights.
`void`	`setROIAnnotationRef(String annotation, int ROIIndex, int annotationRefIndex)` Set the AnnotationRef property of ROI.
`void`	`setROIDescription(String description, int ROIIndex)` Set the Description property of ROI.
`void`	`setROIID(String id, int ROIIndex)` Set the ID property of ROI.
`void`	`setROIName(String name, int ROIIndex)` Set the Name property of ROI.
`void`	`setROINamespace(String namespace, int ROIIndex)` Set the Namespace property of ROI.
`void`	`setRoot(MetadataRoot root)` Set the root node of the metadata.
`void`	`setScreenAnnotationRef(String annotation, int screenIndex, int annotationRefIndex)` Set the AnnotationRef property of Screen.
`void`	`setScreenDescription(String description, int screenIndex)` Set the Description property of Screen.
`void`	`setScreenID(String id, int screenIndex)` Set the ID property of Screen.
`void`	`setScreenName(String name, int screenIndex)` Set the Name property of Screen.
`void`	`setScreenPlateRef(String plate, int screenIndex, int plateRefIndex)` Set the PlateRef property of Screen.
`void`	`setScreenProtocolDescription(String protocolDescription, int screenIndex)` Set the ProtocolDescription property of Screen.
`void`	`setScreenProtocolIdentifier(String protocolIdentifier, int screenIndex)` Set the ProtocolIdentifier property of Screen.
`void`	`setScreenReagentSetDescription(String reagentSetDescription, int screenIndex)` Set the ReagentSetDescription property of Screen.
`void`	`setScreenReagentSetIdentifier(String reagentSetIdentifier, int screenIndex)` Set the ReagentSetIdentifier property of Screen.
`void`	`setScreenType(String type, int screenIndex)` Set the Type property of Screen.
`void`	`setStageLabelName(String name, int imageIndex)` Set the Name property of StageLabel.
`void`	`setStageLabelX(Length x, int imageIndex)` Set the X property of StageLabel.
`void`	`setStageLabelY(Length y, int imageIndex)` Set the Y property of StageLabel.
`void`	`setStageLabelZ(Length z, int imageIndex)` Set the Z property of StageLabel.
`void`	`setTagAnnotationAnnotationRef(String annotation, int tagAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of TagAnnotation.
`void`	`setTagAnnotationAnnotator(String annotator, int tagAnnotationIndex)` Set the Annotator property of TagAnnotation.
`void`	`setTagAnnotationDescription(String description, int tagAnnotationIndex)` Set the Description property of TagAnnotation.
`void`	`setTagAnnotationID(String id, int tagAnnotationIndex)` Set the ID property of TagAnnotation.
`void`	`setTagAnnotationNamespace(String namespace, int tagAnnotationIndex)` Set the Namespace property of TagAnnotation.
`void`	`setTagAnnotationValue(String value, int tagAnnotationIndex)` Set the Value property of TagAnnotation.
`void`	`setTermAnnotationAnnotationRef(String annotation, int termAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of TermAnnotation.
`void`	`setTermAnnotationAnnotator(String annotator, int termAnnotationIndex)` Set the Annotator property of TermAnnotation.
`void`	`setTermAnnotationDescription(String description, int termAnnotationIndex)` Set the Description property of TermAnnotation.
`void`	`setTermAnnotationID(String id, int termAnnotationIndex)` Set the ID property of TermAnnotation.
`void`	`setTermAnnotationNamespace(String namespace, int termAnnotationIndex)` Set the Namespace property of TermAnnotation.
`void`	`setTermAnnotationValue(String value, int termAnnotationIndex)` Set the Value property of TermAnnotation.
`void`	`setTiffDataFirstC(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)` Set the FirstC property of TiffData.
`void`	`setTiffDataFirstT(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)` Set the FirstT property of TiffData.
`void`	`setTiffDataFirstZ(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)` Set the FirstZ property of TiffData.
`void`	`setTiffDataIFD(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)` Set the IFD property of TiffData.
`void`	`setTiffDataPlaneCount(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)` Set the PlaneCount property of TiffData.
`void`	`setTimestampAnnotationAnnotationRef(String annotation, int timestampAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of TimestampAnnotation.
`void`	`setTimestampAnnotationAnnotator(String annotator, int timestampAnnotationIndex)` Set the Annotator property of TimestampAnnotation.
`void`	`setTimestampAnnotationDescription(String description, int timestampAnnotationIndex)` Set the Description property of TimestampAnnotation.
`void`	`setTimestampAnnotationID(String id, int timestampAnnotationIndex)` Set the ID property of TimestampAnnotation.
`void`	`setTimestampAnnotationNamespace(String namespace, int timestampAnnotationIndex)` Set the Namespace property of TimestampAnnotation.
`void`	`setTimestampAnnotationValue(Timestamp value, int timestampAnnotationIndex)` Set the Value property of TimestampAnnotation.
`void`	`setTransmittanceRangeCutIn(Length cutIn, int instrumentIndex, int filterIndex)` Set the CutIn property of TransmittanceRange.
`void`	`setTransmittanceRangeCutInTolerance(Length cutInTolerance, int instrumentIndex, int filterIndex)` Set the CutInTolerance property of TransmittanceRange.
`void`	`setTransmittanceRangeCutOut(Length cutOut, int instrumentIndex, int filterIndex)` Set the CutOut property of TransmittanceRange.
`void`	`setTransmittanceRangeCutOutTolerance(Length cutOutTolerance, int instrumentIndex, int filterIndex)` Set the CutOutTolerance property of TransmittanceRange.
`void`	`setTransmittanceRangeTransmittance(PercentFraction transmittance, int instrumentIndex, int filterIndex)` Set the Transmittance property of TransmittanceRange.
`void`	`setUUID(String uuid)` Set the UUID associated with this collection of metadata.
`void`	`setUUIDFileName(String fileName, int imageIndex, int tiffDataIndex)` Set the FileName property of UUID.
`void`	`setUUIDValue(String value, int imageIndex, int tiffDataIndex)` Set the text value of UUID.
`void`	`setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex)` Set the AnnotationRef property of Well.
`void`	`setWellColor(Color color, int plateIndex, int wellIndex)` Set the Color property of Well.
`void`	`setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex)` Set the Column property of Well.
`void`	`setWellExternalDescription(String externalDescription, int plateIndex, int wellIndex)` Set the ExternalDescription property of Well.
`void`	`setWellExternalIdentifier(String externalIdentifier, int plateIndex, int wellIndex)` Set the ExternalIdentifier property of Well.
`void`	`setWellID(String id, int plateIndex, int wellIndex)` Set the ID property of Well.
`void`	`setWellReagentRef(String reagent, int plateIndex, int wellIndex)` Set the ReagentRef property of Well.
`void`	`setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex)` Set the Row property of Well.
`void`	`setWellSampleID(String id, int plateIndex, int wellIndex, int wellSampleIndex)` Set the ID property of WellSample.
`void`	`setWellSampleImageRef(String image, int plateIndex, int wellIndex, int wellSampleIndex)` Set the ImageRef property of WellSample.
`void`	`setWellSampleIndex(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)` Set the Index property of WellSample.
`void`	`setWellSamplePositionX(Length positionX, int plateIndex, int wellIndex, int wellSampleIndex)` Set the PositionX property of WellSample.
`void`	`setWellSamplePositionY(Length positionY, int plateIndex, int wellIndex, int wellSampleIndex)` Set the PositionY property of WellSample.
`void`	`setWellSampleTimepoint(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)` Set the Timepoint property of WellSample.
`void`	`setWellType(String type, int plateIndex, int wellIndex)` Set the Type property of Well.
`void`	`setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex)` Set the AnnotationRef property of XMLAnnotation.
`void`	`setXMLAnnotationAnnotator(String annotator, int XMLAnnotationIndex)` Set the Annotator property of XMLAnnotation.
`void`	`setXMLAnnotationDescription(String description, int XMLAnnotationIndex)` Set the Description property of XMLAnnotation.
`void`	`setXMLAnnotationID(String id, int XMLAnnotationIndex)` Set the ID property of XMLAnnotation.
`void`	`setXMLAnnotationNamespace(String namespace, int XMLAnnotationIndex)` Set the Namespace property of XMLAnnotation.
`void`	`setXMLAnnotationValue(String value, int XMLAnnotationIndex)` Set the Value property of XMLAnnotation.

- Method Detail
  - createRoot
```
void createRoot()
```
    Create root node. The action taken here is specific to the concrete metadata implementation.
  - getRoot
```
MetadataRoot getRoot()
```
    Get the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation.
    
    Returns:
    the root node.
  - setRoot
```
void setRoot(MetadataRoot root)
```
    Set the root node of the metadata. Note that the root node type will be specific to the concrete metadata implementation. An exception will be thrown if the root node is of an incompatible type.
    
    Parameters:
    root - the root node.
  - setPixelsBinDataBigEndian
```
void setPixelsBinDataBigEndian(Boolean bigEndian,
                             int imageIndex,
                             int binDataIndex)
```
    Set the BigEndian property of Pixels.
    
    Parameters:
    bigEndian - true if big endian, or false if little endian.
    imageIndex - the Image index.
    binDataIndex - BinData index (unused).
  - setMaskBinData
```
void setMaskBinData(byte[] binData,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the BinData property of Mask.
    
    Parameters:
    binData - the BinData to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMapAnnotationValue
```
void setMapAnnotationValue(List<MapPair> value,
                         int mapAnnotationIndex)
```
    Set the values of a MapAnnotation.
    
    Parameters:
    value - the MapAnnotation values to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setGenericExcitationSourceMap
```
void setGenericExcitationSourceMap(List<MapPair> map,
                                 int instrumentIndex,
                                 int lightSourceIndex)
```
    Set the MapAnnotation values of a GenericExcitationSource.
    
    Parameters:
    map - the MapAnnotation values to set.
    instrumentIndex - the Instrument index.
  - setImagingEnvironmentMap
```
void setImagingEnvironmentMap(List<MapPair> map,
                            int imageIndex)
```
    Set the MapAnnotation values of an ImagingEnvironment.
    
    Parameters:
    map - the MapAnnotation values to set.
    imageIndex - the Image index.
  - setUUID
```
void setUUID(String uuid)
```
    Set the UUID associated with this collection of metadata.
    
    Parameters:
    uuid - the UUID to set.
  - setArcAnnotationRef
```
void setArcAnnotationRef(String annotation,
                       int instrumentIndex,
                       int lightSourceIndex,
                       int annotationRefIndex)
```
    Set the AnnotationRef property of Arc.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setArcID
```
void setArcID(String id,
            int instrumentIndex,
            int lightSourceIndex)
```
    Set the ID property of Arc.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcLotNumber
```
void setArcLotNumber(String lotNumber,
                   int instrumentIndex,
                   int lightSourceIndex)
```
    Set the LotNumber property of Arc.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcManufacturer
```
void setArcManufacturer(String manufacturer,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Set the Manufacturer property of Arc.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcModel
```
void setArcModel(String model,
               int instrumentIndex,
               int lightSourceIndex)
```
    Set the Model property of Arc.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcPower
```
void setArcPower(Power power,
               int instrumentIndex,
               int lightSourceIndex)
```
    Set the Power property of Arc.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcSerialNumber
```
void setArcSerialNumber(String serialNumber,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Set the SerialNumber property of Arc.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setArcType
```
void setArcType(ArcType type,
              int instrumentIndex,
              int lightSourceIndex)
```
    Set the Type property of Arc.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setBinaryFileFileName
```
void setBinaryFileFileName(String fileName,
                         int fileAnnotationIndex)
```
    Set the FileName property of BinaryFile.
    
    Parameters:
    fileName - FileName to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setBinaryFileMIMEType
```
void setBinaryFileMIMEType(String mimeType,
                         int fileAnnotationIndex)
```
    Set the MIMEType property of BinaryFile.
    
    Parameters:
    mimeType - MIMEType to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setBinaryFileSize
```
void setBinaryFileSize(NonNegativeLong size,
                     int fileAnnotationIndex)
```
    Set the Size property of BinaryFile.
    
    Parameters:
    size - Size to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setBinaryOnlyMetadataFile
```
void setBinaryOnlyMetadataFile(String metadataFile)
```
    Set the MetadataFile property of BinaryOnly.
    
    Parameters:
    metadataFile - MetadataFile to set.
  - setBinaryOnlyUUID
```
void setBinaryOnlyUUID(String uuid)
```
    Set the UUID property of BinaryOnly.
    
    Parameters:
    uuid - UUID to set.
  - setBooleanAnnotationAnnotationRef
```
void setBooleanAnnotationAnnotationRef(String annotation,
                                     int booleanAnnotationIndex,
                                     int annotationRefIndex)
```
    Set the AnnotationRef property of BooleanAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setBooleanAnnotationAnnotator
```
void setBooleanAnnotationAnnotator(String annotator,
                                 int booleanAnnotationIndex)
```
    Set the Annotator property of BooleanAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationDescription
```
void setBooleanAnnotationDescription(String description,
                                   int booleanAnnotationIndex)
```
    Set the Description property of BooleanAnnotation.
    
    Parameters:
    description - Description to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationID
```
void setBooleanAnnotationID(String id,
                          int booleanAnnotationIndex)
```
    Set the ID property of BooleanAnnotation.
    
    Parameters:
    id - ID to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationNamespace
```
void setBooleanAnnotationNamespace(String namespace,
                                 int booleanAnnotationIndex)
```
    Set the Namespace property of BooleanAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setBooleanAnnotationValue
```
void setBooleanAnnotationValue(Boolean value,
                             int booleanAnnotationIndex)
```
    Set the Value property of BooleanAnnotation.
    
    Parameters:
    value - Value to set.
    booleanAnnotationIndex - the BooleanAnnotation index.
  - setChannelAcquisitionMode
```
void setChannelAcquisitionMode(AcquisitionMode acquisitionMode,
                             int imageIndex,
                             int channelIndex)
```
    Set the AcquisitionMode property of Channel.
    
    Parameters:
    acquisitionMode - AcquisitionMode to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelAnnotationRef
```
void setChannelAnnotationRef(String annotation,
                           int imageIndex,
                           int channelIndex,
                           int annotationRefIndex)
```
    Set the AnnotationRef property of Channel.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    annotationRefIndex - AnnotationRef index (unused).
  - setChannelColor
```
void setChannelColor(Color color,
                   int imageIndex,
                   int channelIndex)
```
    Set the Color property of Channel.
    
    Parameters:
    color - Color to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelContrastMethod
```
void setChannelContrastMethod(ContrastMethod contrastMethod,
                            int imageIndex,
                            int channelIndex)
```
    Set the ContrastMethod property of Channel.
    
    Parameters:
    contrastMethod - ContrastMethod to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelEmissionWavelength
```
void setChannelEmissionWavelength(Length emissionWavelength,
                                int imageIndex,
                                int channelIndex)
```
    Set the EmissionWavelength property of Channel.
    
    Parameters:
    emissionWavelength - EmissionWavelength to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelExcitationWavelength
```
void setChannelExcitationWavelength(Length excitationWavelength,
                                  int imageIndex,
                                  int channelIndex)
```
    Set the ExcitationWavelength property of Channel.
    
    Parameters:
    excitationWavelength - ExcitationWavelength to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelFilterSetRef
```
void setChannelFilterSetRef(String filterSet,
                          int imageIndex,
                          int channelIndex)
```
    Set the FilterSetRef property of Channel.
    
    Parameters:
    filterSet - FilterSetRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelFluor
```
void setChannelFluor(String fluor,
                   int imageIndex,
                   int channelIndex)
```
    Set the Fluor property of Channel.
    
    Parameters:
    fluor - Fluor to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelID
```
void setChannelID(String id,
                int imageIndex,
                int channelIndex)
```
    Set the ID property of Channel.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelIlluminationType
```
void setChannelIlluminationType(IlluminationType illuminationType,
                              int imageIndex,
                              int channelIndex)
```
    Set the IlluminationType property of Channel.
    
    Parameters:
    illuminationType - IlluminationType to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelNDFilter
```
void setChannelNDFilter(Double ndFilter,
                      int imageIndex,
                      int channelIndex)
```
    Set the NDFilter property of Channel.
    
    Parameters:
    ndFilter - NDFilter to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelName
```
void setChannelName(String name,
                  int imageIndex,
                  int channelIndex)
```
    Set the Name property of Channel.
    
    Parameters:
    name - Name to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelPinholeSize
```
void setChannelPinholeSize(Length pinholeSize,
                         int imageIndex,
                         int channelIndex)
```
    Set the PinholeSize property of Channel.
    
    Parameters:
    pinholeSize - PinholeSize to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelPockelCellSetting
```
void setChannelPockelCellSetting(Integer pockelCellSetting,
                               int imageIndex,
                               int channelIndex)
```
    Set the PockelCellSetting property of Channel.
    
    Parameters:
    pockelCellSetting - PockelCellSetting to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setChannelSamplesPerPixel
```
void setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
                             int imageIndex,
                             int channelIndex)
```
    Set the SamplesPerPixel property of Channel.
    
    Parameters:
    samplesPerPixel - SamplesPerPixel to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setCommentAnnotationAnnotationRef
```
void setCommentAnnotationAnnotationRef(String annotation,
                                     int commentAnnotationIndex,
                                     int annotationRefIndex)
```
    Set the AnnotationRef property of CommentAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    commentAnnotationIndex - the CommentAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setCommentAnnotationAnnotator
```
void setCommentAnnotationAnnotator(String annotator,
                                 int commentAnnotationIndex)
```
    Set the Annotator property of CommentAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationDescription
```
void setCommentAnnotationDescription(String description,
                                   int commentAnnotationIndex)
```
    Set the Description property of CommentAnnotation.
    
    Parameters:
    description - Description to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationID
```
void setCommentAnnotationID(String id,
                          int commentAnnotationIndex)
```
    Set the ID property of CommentAnnotation.
    
    Parameters:
    id - ID to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationNamespace
```
void setCommentAnnotationNamespace(String namespace,
                                 int commentAnnotationIndex)
```
    Set the Namespace property of CommentAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setCommentAnnotationValue
```
void setCommentAnnotationValue(String value,
                             int commentAnnotationIndex)
```
    Set the Value property of CommentAnnotation.
    
    Parameters:
    value - Value to set.
    commentAnnotationIndex - the CommentAnnotation index.
  - setDatasetAnnotationRef
```
void setDatasetAnnotationRef(String annotation,
                           int datasetIndex,
                           int annotationRefIndex)
```
    Set the AnnotationRef property of Dataset.
    
    Parameters:
    annotation - AnnotationRef to set.
    datasetIndex - the Dataset index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDatasetDescription
```
void setDatasetDescription(String description,
                         int datasetIndex)
```
    Set the Description property of Dataset.
    
    Parameters:
    description - Description to set.
    datasetIndex - the Dataset index.
  - setDatasetExperimenterGroupRef
```
void setDatasetExperimenterGroupRef(String experimenterGroup,
                                  int datasetIndex)
```
    Set the ExperimenterGroupRef property of Dataset.
    
    Parameters:
    experimenterGroup - ExperimenterGroupRef to set.
    datasetIndex - the Dataset index.
  - setDatasetExperimenterRef
```
void setDatasetExperimenterRef(String experimenter,
                             int datasetIndex)
```
    Set the ExperimenterRef property of Dataset.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    datasetIndex - the Dataset index.
  - setDatasetID
```
void setDatasetID(String id,
                int datasetIndex)
```
    Set the ID property of Dataset.
    
    Parameters:
    id - ID to set.
    datasetIndex - the Dataset index.
  - setDatasetImageRef
```
void setDatasetImageRef(String image,
                      int datasetIndex,
                      int imageRefIndex)
```
    Set the ImageRef property of Dataset.
    
    Parameters:
    image - ImageRef to set.
    datasetIndex - the Dataset index.
    imageRefIndex - ImageRef index (unused).
  - setDatasetName
```
void setDatasetName(String name,
                  int datasetIndex)
```
    Set the Name property of Dataset.
    
    Parameters:
    name - Name to set.
    datasetIndex - the Dataset index.
  - setDetectorAmplificationGain
```
void setDetectorAmplificationGain(Double amplificationGain,
                                int instrumentIndex,
                                int detectorIndex)
```
    Set the AmplificationGain property of Detector.
    
    Parameters:
    amplificationGain - AmplificationGain to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorAnnotationRef
```
void setDetectorAnnotationRef(String annotation,
                            int instrumentIndex,
                            int detectorIndex,
                            int annotationRefIndex)
```
    Set the AnnotationRef property of Detector.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDetectorGain
```
void setDetectorGain(Double gain,
                   int instrumentIndex,
                   int detectorIndex)
```
    Set the Gain property of Detector.
    
    Parameters:
    gain - Gain to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorID
```
void setDetectorID(String id,
                 int instrumentIndex,
                 int detectorIndex)
```
    Set the ID property of Detector.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorLotNumber
```
void setDetectorLotNumber(String lotNumber,
                        int instrumentIndex,
                        int detectorIndex)
```
    Set the LotNumber property of Detector.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorManufacturer
```
void setDetectorManufacturer(String manufacturer,
                           int instrumentIndex,
                           int detectorIndex)
```
    Set the Manufacturer property of Detector.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorModel
```
void setDetectorModel(String model,
                    int instrumentIndex,
                    int detectorIndex)
```
    Set the Model property of Detector.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorOffset
```
void setDetectorOffset(Double offset,
                     int instrumentIndex,
                     int detectorIndex)
```
    Set the Offset property of Detector.
    
    Parameters:
    offset - Offset to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorSerialNumber
```
void setDetectorSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int detectorIndex)
```
    Set the SerialNumber property of Detector.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorType
```
void setDetectorType(DetectorType type,
                   int instrumentIndex,
                   int detectorIndex)
```
    Set the Type property of Detector.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorVoltage
```
void setDetectorVoltage(ElectricPotential voltage,
                      int instrumentIndex,
                      int detectorIndex)
```
    Set the Voltage property of Detector.
    
    Parameters:
    voltage - Voltage to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorZoom
```
void setDetectorZoom(Double zoom,
                   int instrumentIndex,
                   int detectorIndex)
```
    Set the Zoom property of Detector.
    
    Parameters:
    zoom - Zoom to set.
    instrumentIndex - the Instrument index.
    detectorIndex - the Detector index.
  - setDetectorSettingsBinning
```
void setDetectorSettingsBinning(Binning binning,
                              int imageIndex,
                              int channelIndex)
```
    Set the Binning property of DetectorSettings.
    
    Parameters:
    binning - Binning to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsGain
```
void setDetectorSettingsGain(Double gain,
                           int imageIndex,
                           int channelIndex)
```
    Set the Gain property of DetectorSettings.
    
    Parameters:
    gain - Gain to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsID
```
void setDetectorSettingsID(String id,
                         int imageIndex,
                         int channelIndex)
```
    Set the ID property of DetectorSettings.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsIntegration
```
void setDetectorSettingsIntegration(PositiveInteger integration,
                                  int imageIndex,
                                  int channelIndex)
```
    Set the Integration property of DetectorSettings.
    
    Parameters:
    integration - Integration to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsOffset
```
void setDetectorSettingsOffset(Double offset,
                             int imageIndex,
                             int channelIndex)
```
    Set the Offset property of DetectorSettings.
    
    Parameters:
    offset - Offset to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsReadOutRate
```
void setDetectorSettingsReadOutRate(Frequency readOutRate,
                                  int imageIndex,
                                  int channelIndex)
```
    Set the ReadOutRate property of DetectorSettings.
    
    Parameters:
    readOutRate - ReadOutRate to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsVoltage
```
void setDetectorSettingsVoltage(ElectricPotential voltage,
                              int imageIndex,
                              int channelIndex)
```
    Set the Voltage property of DetectorSettings.
    
    Parameters:
    voltage - Voltage to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDetectorSettingsZoom
```
void setDetectorSettingsZoom(Double zoom,
                           int imageIndex,
                           int channelIndex)
```
    Set the Zoom property of DetectorSettings.
    
    Parameters:
    zoom - Zoom to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setDichroicAnnotationRef
```
void setDichroicAnnotationRef(String annotation,
                            int instrumentIndex,
                            int dichroicIndex,
                            int annotationRefIndex)
```
    Set the AnnotationRef property of Dichroic.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDichroicID
```
void setDichroicID(String id,
                 int instrumentIndex,
                 int dichroicIndex)
```
    Set the ID property of Dichroic.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicLotNumber
```
void setDichroicLotNumber(String lotNumber,
                        int instrumentIndex,
                        int dichroicIndex)
```
    Set the LotNumber property of Dichroic.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicManufacturer
```
void setDichroicManufacturer(String manufacturer,
                           int instrumentIndex,
                           int dichroicIndex)
```
    Set the Manufacturer property of Dichroic.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicModel
```
void setDichroicModel(String model,
                    int instrumentIndex,
                    int dichroicIndex)
```
    Set the Model property of Dichroic.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDichroicSerialNumber
```
void setDichroicSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int dichroicIndex)
```
    Set the SerialNumber property of Dichroic.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    dichroicIndex - the Dichroic index.
  - setDoubleAnnotationAnnotationRef
```
void setDoubleAnnotationAnnotationRef(String annotation,
                                    int doubleAnnotationIndex,
                                    int annotationRefIndex)
```
    Set the AnnotationRef property of DoubleAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setDoubleAnnotationAnnotator
```
void setDoubleAnnotationAnnotator(String annotator,
                                int doubleAnnotationIndex)
```
    Set the Annotator property of DoubleAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationDescription
```
void setDoubleAnnotationDescription(String description,
                                  int doubleAnnotationIndex)
```
    Set the Description property of DoubleAnnotation.
    
    Parameters:
    description - Description to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationID
```
void setDoubleAnnotationID(String id,
                         int doubleAnnotationIndex)
```
    Set the ID property of DoubleAnnotation.
    
    Parameters:
    id - ID to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationNamespace
```
void setDoubleAnnotationNamespace(String namespace,
                                int doubleAnnotationIndex)
```
    Set the Namespace property of DoubleAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setDoubleAnnotationValue
```
void setDoubleAnnotationValue(Double value,
                            int doubleAnnotationIndex)
```
    Set the Value property of DoubleAnnotation.
    
    Parameters:
    value - Value to set.
    doubleAnnotationIndex - the DoubleAnnotation index.
  - setEllipseAnnotationRef
```
void setEllipseAnnotationRef(String annotation,
                           int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)
```
    Set the AnnotationRef property of Ellipse.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setEllipseFillColor
```
void setEllipseFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the FillColor property of Ellipse.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFillRule
```
void setEllipseFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the FillRule property of Ellipse.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFontFamily
```
void setEllipseFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the FontFamily property of Ellipse.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFontSize
```
void setEllipseFontSize(Length fontSize,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the FontSize property of Ellipse.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseFontStyle
```
void setEllipseFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the FontStyle property of Ellipse.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseID
```
void setEllipseID(String id,
                int ROIIndex,
                int shapeIndex)
```
    Set the ID property of Ellipse.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseLineCap
```
void setEllipseLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the LineCap property of Ellipse.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseLocked
```
void setEllipseLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the Locked property of Ellipse.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseStrokeColor
```
void setEllipseStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the StrokeColor property of Ellipse.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseStrokeDashArray
```
void setEllipseStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)
```
    Set the StrokeDashArray property of Ellipse.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseStrokeWidth
```
void setEllipseStrokeWidth(Length strokeWidth,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the StrokeWidth property of Ellipse.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseText
```
void setEllipseText(String text,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the Text property of Ellipse.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTheC
```
void setEllipseTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the TheC property of Ellipse.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTheT
```
void setEllipseTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the TheT property of Ellipse.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTheZ
```
void setEllipseTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the TheZ property of Ellipse.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseTransform
```
void setEllipseTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the Transform property of Ellipse.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseVisible
```
void setEllipseVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the Visible property of Ellipse.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseRadiusX
```
void setEllipseRadiusX(Double radiusX,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the RadiusX property of Ellipse.
    
    Parameters:
    radiusX - RadiusX to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseRadiusY
```
void setEllipseRadiusY(Double radiusY,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the RadiusY property of Ellipse.
    
    Parameters:
    radiusY - RadiusY to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseX
```
void setEllipseX(Double x,
               int ROIIndex,
               int shapeIndex)
```
    Set the X property of Ellipse.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setEllipseY
```
void setEllipseY(Double y,
               int ROIIndex,
               int shapeIndex)
```
    Set the Y property of Ellipse.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setExperimentDescription
```
void setExperimentDescription(String description,
                            int experimentIndex)
```
    Set the Description property of Experiment.
    
    Parameters:
    description - Description to set.
    experimentIndex - the Experiment index.
  - setExperimentExperimenterRef
```
void setExperimentExperimenterRef(String experimenter,
                                int experimentIndex)
```
    Set the ExperimenterRef property of Experiment.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    experimentIndex - the Experiment index.
  - setExperimentID
```
void setExperimentID(String id,
                   int experimentIndex)
```
    Set the ID property of Experiment.
    
    Parameters:
    id - ID to set.
    experimentIndex - the Experiment index.
  - setExperimentType
```
void setExperimentType(ExperimentType type,
                     int experimentIndex)
```
    Set the Type property of Experiment.
    
    Parameters:
    type - Type to set.
    experimentIndex - the Experiment index.
  - setExperimenterAnnotationRef
```
void setExperimenterAnnotationRef(String annotation,
                                int experimenterIndex,
                                int annotationRefIndex)
```
    Set the AnnotationRef property of Experimenter.
    
    Parameters:
    annotation - AnnotationRef to set.
    experimenterIndex - the Experimenter index.
    annotationRefIndex - AnnotationRef index (unused).
  - setExperimenterEmail
```
void setExperimenterEmail(String email,
                        int experimenterIndex)
```
    Set the Email property of Experimenter.
    
    Parameters:
    email - Email to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterFirstName
```
void setExperimenterFirstName(String firstName,
                            int experimenterIndex)
```
    Set the FirstName property of Experimenter.
    
    Parameters:
    firstName - FirstName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterID
```
void setExperimenterID(String id,
                     int experimenterIndex)
```
    Set the ID property of Experimenter.
    
    Parameters:
    id - ID to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterInstitution
```
void setExperimenterInstitution(String institution,
                              int experimenterIndex)
```
    Set the Institution property of Experimenter.
    
    Parameters:
    institution - Institution to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterLastName
```
void setExperimenterLastName(String lastName,
                           int experimenterIndex)
```
    Set the LastName property of Experimenter.
    
    Parameters:
    lastName - LastName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterMiddleName
```
void setExperimenterMiddleName(String middleName,
                             int experimenterIndex)
```
    Set the MiddleName property of Experimenter.
    
    Parameters:
    middleName - MiddleName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterUserName
```
void setExperimenterUserName(String userName,
                           int experimenterIndex)
```
    Set the UserName property of Experimenter.
    
    Parameters:
    userName - UserName to set.
    experimenterIndex - the Experimenter index.
  - setExperimenterGroupAnnotationRef
```
void setExperimenterGroupAnnotationRef(String annotation,
                                     int experimenterGroupIndex,
                                     int annotationRefIndex)
```
    Set the AnnotationRef property of ExperimenterGroup.
    
    Parameters:
    annotation - AnnotationRef to set.
    experimenterGroupIndex - the ExperimenterGroup index.
    annotationRefIndex - AnnotationRef index (unused).
  - setExperimenterGroupDescription
```
void setExperimenterGroupDescription(String description,
                                   int experimenterGroupIndex)
```
    Set the Description property of ExperimenterGroup.
    
    Parameters:
    description - Description to set.
    experimenterGroupIndex - the ExperimenterGroup index.
  - setExperimenterGroupExperimenterRef
```
void setExperimenterGroupExperimenterRef(String experimenter,
                                       int experimenterGroupIndex,
                                       int experimenterRefIndex)
```
    Set the ExperimenterRef property of ExperimenterGroup.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    experimenterGroupIndex - the ExperimenterGroup index.
    experimenterRefIndex - ExperimenterRef index (unused).
  - setExperimenterGroupID
```
void setExperimenterGroupID(String id,
                          int experimenterGroupIndex)
```
    Set the ID property of ExperimenterGroup.
    
    Parameters:
    id - ID to set.
    experimenterGroupIndex - the ExperimenterGroup index.
  - setExperimenterGroupLeader
```
void setExperimenterGroupLeader(String leader,
                              int experimenterGroupIndex,
                              int leaderIndex)
```
    Set the Leader property of ExperimenterGroup.
    
    Parameters:
    leader - Leader to set.
    experimenterGroupIndex - the ExperimenterGroup index.
    leaderIndex - Leader index (unused).
  - setExperimenterGroupName
```
void setExperimenterGroupName(String name,
                            int experimenterGroupIndex)
```
    Set the Name property of ExperimenterGroup.
    
    Parameters:
    name - Name to set.
    experimenterGroupIndex - the ExperimenterGroup index.
  - setFilamentAnnotationRef
```
void setFilamentAnnotationRef(String annotation,
                            int instrumentIndex,
                            int lightSourceIndex,
                            int annotationRefIndex)
```
    Set the AnnotationRef property of Filament.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setFilamentID
```
void setFilamentID(String id,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Set the ID property of Filament.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentLotNumber
```
void setFilamentLotNumber(String lotNumber,
                        int instrumentIndex,
                        int lightSourceIndex)
```
    Set the LotNumber property of Filament.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentManufacturer
```
void setFilamentManufacturer(String manufacturer,
                           int instrumentIndex,
                           int lightSourceIndex)
```
    Set the Manufacturer property of Filament.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentModel
```
void setFilamentModel(String model,
                    int instrumentIndex,
                    int lightSourceIndex)
```
    Set the Model property of Filament.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentPower
```
void setFilamentPower(Power power,
                    int instrumentIndex,
                    int lightSourceIndex)
```
    Set the Power property of Filament.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentSerialNumber
```
void setFilamentSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int lightSourceIndex)
```
    Set the SerialNumber property of Filament.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFilamentType
```
void setFilamentType(FilamentType type,
                   int instrumentIndex,
                   int lightSourceIndex)
```
    Set the Type property of Filament.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setFileAnnotationAnnotationRef
```
void setFileAnnotationAnnotationRef(String annotation,
                                  int fileAnnotationIndex,
                                  int annotationRefIndex)
```
    Set the AnnotationRef property of FileAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    fileAnnotationIndex - the FileAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setFileAnnotationAnnotator
```
void setFileAnnotationAnnotator(String annotator,
                              int fileAnnotationIndex)
```
    Set the Annotator property of FileAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFileAnnotationDescription
```
void setFileAnnotationDescription(String description,
                                int fileAnnotationIndex)
```
    Set the Description property of FileAnnotation.
    
    Parameters:
    description - Description to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFileAnnotationID
```
void setFileAnnotationID(String id,
                       int fileAnnotationIndex)
```
    Set the ID property of FileAnnotation.
    
    Parameters:
    id - ID to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFileAnnotationNamespace
```
void setFileAnnotationNamespace(String namespace,
                              int fileAnnotationIndex)
```
    Set the Namespace property of FileAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    fileAnnotationIndex - the FileAnnotation index.
  - setFilterAnnotationRef
```
void setFilterAnnotationRef(String annotation,
                          int instrumentIndex,
                          int filterIndex,
                          int annotationRefIndex)
```
    Set the AnnotationRef property of Filter.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
    annotationRefIndex - AnnotationRef index (unused).
  - setFilterFilterWheel
```
void setFilterFilterWheel(String filterWheel,
                        int instrumentIndex,
                        int filterIndex)
```
    Set the FilterWheel property of Filter.
    
    Parameters:
    filterWheel - FilterWheel to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterID
```
void setFilterID(String id,
               int instrumentIndex,
               int filterIndex)
```
    Set the ID property of Filter.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterLotNumber
```
void setFilterLotNumber(String lotNumber,
                      int instrumentIndex,
                      int filterIndex)
```
    Set the LotNumber property of Filter.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterManufacturer
```
void setFilterManufacturer(String manufacturer,
                         int instrumentIndex,
                         int filterIndex)
```
    Set the Manufacturer property of Filter.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterModel
```
void setFilterModel(String model,
                  int instrumentIndex,
                  int filterIndex)
```
    Set the Model property of Filter.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterSerialNumber
```
void setFilterSerialNumber(String serialNumber,
                         int instrumentIndex,
                         int filterIndex)
```
    Set the SerialNumber property of Filter.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterType
```
void setFilterType(FilterType type,
                 int instrumentIndex,
                 int filterIndex)
```
    Set the Type property of Filter.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setFilterSetDichroicRef
```
void setFilterSetDichroicRef(String dichroic,
                           int instrumentIndex,
                           int filterSetIndex)
```
    Set the DichroicRef property of FilterSet.
    
    Parameters:
    dichroic - DichroicRef to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetEmissionFilterRef
```
void setFilterSetEmissionFilterRef(String emissionFilter,
                                 int instrumentIndex,
                                 int filterSetIndex,
                                 int emissionFilterRefIndex)
```
    Set the EmissionFilterRef property of FilterSet.
    
    Parameters:
    emissionFilter - EmissionFilterRef to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    emissionFilterRefIndex - EmissionFilterRef index (unused).
  - setFilterSetExcitationFilterRef
```
void setFilterSetExcitationFilterRef(String excitationFilter,
                                   int instrumentIndex,
                                   int filterSetIndex,
                                   int excitationFilterRefIndex)
```
    Set the ExcitationFilterRef property of FilterSet.
    
    Parameters:
    excitationFilter - ExcitationFilterRef to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
    excitationFilterRefIndex - ExcitationFilterRef index (unused).
  - setFilterSetID
```
void setFilterSetID(String id,
                  int instrumentIndex,
                  int filterSetIndex)
```
    Set the ID property of FilterSet.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetLotNumber
```
void setFilterSetLotNumber(String lotNumber,
                         int instrumentIndex,
                         int filterSetIndex)
```
    Set the LotNumber property of FilterSet.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetManufacturer
```
void setFilterSetManufacturer(String manufacturer,
                            int instrumentIndex,
                            int filterSetIndex)
```
    Set the Manufacturer property of FilterSet.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetModel
```
void setFilterSetModel(String model,
                     int instrumentIndex,
                     int filterSetIndex)
```
    Set the Model property of FilterSet.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setFilterSetSerialNumber
```
void setFilterSetSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int filterSetIndex)
```
    Set the SerialNumber property of FilterSet.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    filterSetIndex - the FilterSet index.
  - setGenericExcitationSourceAnnotationRef
```
void setGenericExcitationSourceAnnotationRef(String annotation,
                                           int instrumentIndex,
                                           int lightSourceIndex,
                                           int annotationRefIndex)
```
    Set the AnnotationRef property of GenericExcitationSource.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setGenericExcitationSourceID
```
void setGenericExcitationSourceID(String id,
                                int instrumentIndex,
                                int lightSourceIndex)
```
    Set the ID property of GenericExcitationSource.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceLotNumber
```
void setGenericExcitationSourceLotNumber(String lotNumber,
                                       int instrumentIndex,
                                       int lightSourceIndex)
```
    Set the LotNumber property of GenericExcitationSource.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceManufacturer
```
void setGenericExcitationSourceManufacturer(String manufacturer,
                                          int instrumentIndex,
                                          int lightSourceIndex)
```
    Set the Manufacturer property of GenericExcitationSource.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceModel
```
void setGenericExcitationSourceModel(String model,
                                   int instrumentIndex,
                                   int lightSourceIndex)
```
    Set the Model property of GenericExcitationSource.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourcePower
```
void setGenericExcitationSourcePower(Power power,
                                   int instrumentIndex,
                                   int lightSourceIndex)
```
    Set the Power property of GenericExcitationSource.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setGenericExcitationSourceSerialNumber
```
void setGenericExcitationSourceSerialNumber(String serialNumber,
                                          int instrumentIndex,
                                          int lightSourceIndex)
```
    Set the SerialNumber property of GenericExcitationSource.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setImageAcquisitionDate
```
void setImageAcquisitionDate(Timestamp acquisitionDate,
                           int imageIndex)
```
    Set the AcquisitionDate property of Image.
    
    Parameters:
    acquisitionDate - AcquisitionDate to set.
    imageIndex - the Image index.
  - setImageAnnotationRef
```
void setImageAnnotationRef(String annotation,
                         int imageIndex,
                         int annotationRefIndex)
```
    Set the AnnotationRef property of Image.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    annotationRefIndex - AnnotationRef index (unused).
  - setImageDescription
```
void setImageDescription(String description,
                       int imageIndex)
```
    Set the Description property of Image.
    
    Parameters:
    description - Description to set.
    imageIndex - the Image index.
  - setImageExperimentRef
```
void setImageExperimentRef(String experiment,
                         int imageIndex)
```
    Set the ExperimentRef property of Image.
    
    Parameters:
    experiment - ExperimentRef to set.
    imageIndex - the Image index.
  - setImageExperimenterGroupRef
```
void setImageExperimenterGroupRef(String experimenterGroup,
                                int imageIndex)
```
    Set the ExperimenterGroupRef property of Image.
    
    Parameters:
    experimenterGroup - ExperimenterGroupRef to set.
    imageIndex - the Image index.
  - setImageExperimenterRef
```
void setImageExperimenterRef(String experimenter,
                           int imageIndex)
```
    Set the ExperimenterRef property of Image.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    imageIndex - the Image index.
  - setImageID
```
void setImageID(String id,
              int imageIndex)
```
    Set the ID property of Image.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
  - setImageInstrumentRef
```
void setImageInstrumentRef(String instrument,
                         int imageIndex)
```
    Set the InstrumentRef property of Image.
    
    Parameters:
    instrument - InstrumentRef to set.
    imageIndex - the Image index.
  - setImageMicrobeamManipulationRef
```
void setImageMicrobeamManipulationRef(String microbeamManipulation,
                                    int imageIndex,
                                    int microbeamManipulationRefIndex)
```
    Set the MicrobeamManipulationRef property of Image.
    
    Parameters:
    microbeamManipulation - MicrobeamManipulationRef to set.
    imageIndex - the Image index.
    microbeamManipulationRefIndex - MicrobeamManipulationRef index (unused).
  - setImageName
```
void setImageName(String name,
                int imageIndex)
```
    Set the Name property of Image.
    
    Parameters:
    name - Name to set.
    imageIndex - the Image index.
  - setImageROIRef
```
void setImageROIRef(String roi,
                  int imageIndex,
                  int ROIRefIndex)
```
    Set the ROIRef property of Image.
    
    Parameters:
    roi - ROIRef to set.
    imageIndex - the Image index.
    ROIRefIndex - ROIRef index (unused).
  - setImagingEnvironmentAirPressure
```
void setImagingEnvironmentAirPressure(Pressure airPressure,
                                    int imageIndex)
```
    Set the AirPressure property of ImagingEnvironment.
    
    Parameters:
    airPressure - AirPressure to set.
    imageIndex - the Image index.
  - setImagingEnvironmentCO2Percent
```
void setImagingEnvironmentCO2Percent(PercentFraction co2Percent,
                                   int imageIndex)
```
    Set the CO2Percent property of ImagingEnvironment.
    
    Parameters:
    co2Percent - CO2Percent to set.
    imageIndex - the Image index.
  - setImagingEnvironmentHumidity
```
void setImagingEnvironmentHumidity(PercentFraction humidity,
                                 int imageIndex)
```
    Set the Humidity property of ImagingEnvironment.
    
    Parameters:
    humidity - Humidity to set.
    imageIndex - the Image index.
  - setImagingEnvironmentTemperature
```
void setImagingEnvironmentTemperature(Temperature temperature,
                                    int imageIndex)
```
    Set the Temperature property of ImagingEnvironment.
    
    Parameters:
    temperature - Temperature to set.
    imageIndex - the Image index.
  - setInstrumentAnnotationRef
```
void setInstrumentAnnotationRef(String annotation,
                              int instrumentIndex,
                              int annotationRefIndex)
```
    Set the AnnotationRef property of Instrument.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    annotationRefIndex - AnnotationRef index (unused).
  - setInstrumentID
```
void setInstrumentID(String id,
                   int instrumentIndex)
```
    Set the ID property of Instrument.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
  - setLabelAnnotationRef
```
void setLabelAnnotationRef(String annotation,
                         int ROIIndex,
                         int shapeIndex,
                         int annotationRefIndex)
```
    Set the AnnotationRef property of Label.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLabelFillColor
```
void setLabelFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the FillColor property of Label.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFillRule
```
void setLabelFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FillRule property of Label.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFontFamily
```
void setLabelFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the FontFamily property of Label.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFontSize
```
void setLabelFontSize(Length fontSize,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FontSize property of Label.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelFontStyle
```
void setLabelFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the FontStyle property of Label.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelID
```
void setLabelID(String id,
              int ROIIndex,
              int shapeIndex)
```
    Set the ID property of Label.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelLineCap
```
void setLabelLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the LineCap property of Label.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelLocked
```
void setLabelLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the Locked property of Label.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelStrokeColor
```
void setLabelStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the StrokeColor property of Label.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelStrokeDashArray
```
void setLabelStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)
```
    Set the StrokeDashArray property of Label.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelStrokeWidth
```
void setLabelStrokeWidth(Length strokeWidth,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the StrokeWidth property of Label.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelText
```
void setLabelText(String text,
                int ROIIndex,
                int shapeIndex)
```
    Set the Text property of Label.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTheC
```
void setLabelTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)
```
    Set the TheC property of Label.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTheT
```
void setLabelTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)
```
    Set the TheT property of Label.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTheZ
```
void setLabelTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)
```
    Set the TheZ property of Label.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelTransform
```
void setLabelTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the Transform property of Label.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelVisible
```
void setLabelVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the Visible property of Label.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelX
```
void setLabelX(Double x,
             int ROIIndex,
             int shapeIndex)
```
    Set the X property of Label.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLabelY
```
void setLabelY(Double y,
             int ROIIndex,
             int shapeIndex)
```
    Set the Y property of Label.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLaserAnnotationRef
```
void setLaserAnnotationRef(String annotation,
                         int instrumentIndex,
                         int lightSourceIndex,
                         int annotationRefIndex)
```
    Set the AnnotationRef property of Laser.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLaserID
```
void setLaserID(String id,
              int instrumentIndex,
              int lightSourceIndex)
```
    Set the ID property of Laser.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserLotNumber
```
void setLaserLotNumber(String lotNumber,
                     int instrumentIndex,
                     int lightSourceIndex)
```
    Set the LotNumber property of Laser.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserManufacturer
```
void setLaserManufacturer(String manufacturer,
                        int instrumentIndex,
                        int lightSourceIndex)
```
    Set the Manufacturer property of Laser.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserModel
```
void setLaserModel(String model,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Set the Model property of Laser.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPower
```
void setLaserPower(Power power,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Set the Power property of Laser.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserSerialNumber
```
void setLaserSerialNumber(String serialNumber,
                        int instrumentIndex,
                        int lightSourceIndex)
```
    Set the SerialNumber property of Laser.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserFrequencyMultiplication
```
void setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
                                   int instrumentIndex,
                                   int lightSourceIndex)
```
    Set the FrequencyMultiplication property of Laser.
    
    Parameters:
    frequencyMultiplication - FrequencyMultiplication to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserLaserMedium
```
void setLaserLaserMedium(LaserMedium laserMedium,
                       int instrumentIndex,
                       int lightSourceIndex)
```
    Set the LaserMedium property of Laser.
    
    Parameters:
    laserMedium - LaserMedium to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPockelCell
```
void setLaserPockelCell(Boolean pockelCell,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Set the PockelCell property of Laser.
    
    Parameters:
    pockelCell - PockelCell to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPulse
```
void setLaserPulse(Pulse pulse,
                 int instrumentIndex,
                 int lightSourceIndex)
```
    Set the Pulse property of Laser.
    
    Parameters:
    pulse - Pulse to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserPump
```
void setLaserPump(String pump,
                int instrumentIndex,
                int lightSourceIndex)
```
    Set the Pump property of Laser.
    
    Parameters:
    pump - Pump to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserRepetitionRate
```
void setLaserRepetitionRate(Frequency repetitionRate,
                          int instrumentIndex,
                          int lightSourceIndex)
```
    Set the RepetitionRate property of Laser.
    
    Parameters:
    repetitionRate - RepetitionRate to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserTuneable
```
void setLaserTuneable(Boolean tuneable,
                    int instrumentIndex,
                    int lightSourceIndex)
```
    Set the Tuneable property of Laser.
    
    Parameters:
    tuneable - Tuneable to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserType
```
void setLaserType(LaserType type,
                int instrumentIndex,
                int lightSourceIndex)
```
    Set the Type property of Laser.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLaserWavelength
```
void setLaserWavelength(Length wavelength,
                      int instrumentIndex,
                      int lightSourceIndex)
```
    Set the Wavelength property of Laser.
    
    Parameters:
    wavelength - Wavelength to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeAnnotationRef
```
void setLightEmittingDiodeAnnotationRef(String annotation,
                                      int instrumentIndex,
                                      int lightSourceIndex,
                                      int annotationRefIndex)
```
    Set the AnnotationRef property of LightEmittingDiode.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLightEmittingDiodeID
```
void setLightEmittingDiodeID(String id,
                           int instrumentIndex,
                           int lightSourceIndex)
```
    Set the ID property of LightEmittingDiode.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeLotNumber
```
void setLightEmittingDiodeLotNumber(String lotNumber,
                                  int instrumentIndex,
                                  int lightSourceIndex)
```
    Set the LotNumber property of LightEmittingDiode.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeManufacturer
```
void setLightEmittingDiodeManufacturer(String manufacturer,
                                     int instrumentIndex,
                                     int lightSourceIndex)
```
    Set the Manufacturer property of LightEmittingDiode.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeModel
```
void setLightEmittingDiodeModel(String model,
                              int instrumentIndex,
                              int lightSourceIndex)
```
    Set the Model property of LightEmittingDiode.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodePower
```
void setLightEmittingDiodePower(Power power,
                              int instrumentIndex,
                              int lightSourceIndex)
```
    Set the Power property of LightEmittingDiode.
    
    Parameters:
    power - Power to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightEmittingDiodeSerialNumber
```
void setLightEmittingDiodeSerialNumber(String serialNumber,
                                     int instrumentIndex,
                                     int lightSourceIndex)
```
    Set the SerialNumber property of LightEmittingDiode.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    lightSourceIndex - the LightSource index.
  - setLightPathAnnotationRef
```
void setLightPathAnnotationRef(String annotation,
                             int imageIndex,
                             int channelIndex,
                             int annotationRefIndex)
```
    Set the AnnotationRef property of LightPath.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLightPathDichroicRef
```
void setLightPathDichroicRef(String dichroic,
                           int imageIndex,
                           int channelIndex)
```
    Set the DichroicRef property of LightPath.
    
    Parameters:
    dichroic - DichroicRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setLightPathEmissionFilterRef
```
void setLightPathEmissionFilterRef(String emissionFilter,
                                 int imageIndex,
                                 int channelIndex,
                                 int emissionFilterRefIndex)
```
    Set the EmissionFilterRef property of LightPath.
    
    Parameters:
    emissionFilter - EmissionFilterRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    emissionFilterRefIndex - EmissionFilterRef index (unused).
  - setLightPathExcitationFilterRef
```
void setLightPathExcitationFilterRef(String excitationFilter,
                                   int imageIndex,
                                   int channelIndex,
                                   int excitationFilterRefIndex)
```
    Set the ExcitationFilterRef property of LightPath.
    
    Parameters:
    excitationFilter - ExcitationFilterRef to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
    excitationFilterRefIndex - ExcitationFilterRef index (unused).
  - setChannelLightSourceSettingsAttenuation
```
void setChannelLightSourceSettingsAttenuation(PercentFraction attenuation,
                                            int imageIndex,
                                            int channelIndex)
```
    Set the Attenuation property of LightSourceSettings.
    
    Parameters:
    attenuation - Attenuation to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setMicrobeamManipulationLightSourceSettingsAttenuation
```
void setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation,
                                                          int experimentIndex,
                                                          int microbeamManipulationIndex,
                                                          int lightSourceSettingsIndex)
```
    Set the Attenuation property of LightSourceSettings.
    
    Parameters:
    attenuation - Attenuation to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
  - setChannelLightSourceSettingsID
```
void setChannelLightSourceSettingsID(String id,
                                   int imageIndex,
                                   int channelIndex)
```
    Set the ID property of LightSourceSettings.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setMicrobeamManipulationLightSourceSettingsID
```
void setMicrobeamManipulationLightSourceSettingsID(String id,
                                                 int experimentIndex,
                                                 int microbeamManipulationIndex,
                                                 int lightSourceSettingsIndex)
```
    Set the ID property of LightSourceSettings.
    
    Parameters:
    id - ID to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
  - setChannelLightSourceSettingsWavelength
```
void setChannelLightSourceSettingsWavelength(Length wavelength,
                                           int imageIndex,
                                           int channelIndex)
```
    Set the Wavelength property of LightSourceSettings.
    
    Parameters:
    wavelength - Wavelength to set.
    imageIndex - the Image index.
    channelIndex - the Channel index.
  - setMicrobeamManipulationLightSourceSettingsWavelength
```
void setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength,
                                                         int experimentIndex,
                                                         int microbeamManipulationIndex,
                                                         int lightSourceSettingsIndex)
```
    Set the Wavelength property of LightSourceSettings.
    
    Parameters:
    wavelength - Wavelength to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    lightSourceSettingsIndex - the LightSourceSettings index.
  - setLineAnnotationRef
```
void setLineAnnotationRef(String annotation,
                        int ROIIndex,
                        int shapeIndex,
                        int annotationRefIndex)
```
    Set the AnnotationRef property of Line.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLineFillColor
```
void setLineFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FillColor property of Line.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFillRule
```
void setLineFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the FillRule property of Line.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFontFamily
```
void setLineFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the FontFamily property of Line.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFontSize
```
void setLineFontSize(Length fontSize,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the FontSize property of Line.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineFontStyle
```
void setLineFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FontStyle property of Line.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineID
```
void setLineID(String id,
             int ROIIndex,
             int shapeIndex)
```
    Set the ID property of Line.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineLineCap
```
void setLineLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the LineCap property of Line.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineLocked
```
void setLineLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)
```
    Set the Locked property of Line.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineStrokeColor
```
void setLineStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the StrokeColor property of Line.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineStrokeDashArray
```
void setLineStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)
```
    Set the StrokeDashArray property of Line.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineStrokeWidth
```
void setLineStrokeWidth(Length strokeWidth,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the StrokeWidth property of Line.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineText
```
void setLineText(String text,
               int ROIIndex,
               int shapeIndex)
```
    Set the Text property of Line.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTheC
```
void setLineTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)
```
    Set the TheC property of Line.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTheT
```
void setLineTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)
```
    Set the TheT property of Line.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTheZ
```
void setLineTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)
```
    Set the TheZ property of Line.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineTransform
```
void setLineTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the Transform property of Line.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineVisible
```
void setLineVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the Visible property of Line.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineMarkerEnd
```
void setLineMarkerEnd(Marker markerEnd,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the MarkerEnd property of Line.
    
    Parameters:
    markerEnd - MarkerEnd to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineMarkerStart
```
void setLineMarkerStart(Marker markerStart,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the MarkerStart property of Line.
    
    Parameters:
    markerStart - MarkerStart to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineX1
```
void setLineX1(Double x1,
             int ROIIndex,
             int shapeIndex)
```
    Set the X1 property of Line.
    
    Parameters:
    x1 - X1 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineX2
```
void setLineX2(Double x2,
             int ROIIndex,
             int shapeIndex)
```
    Set the X2 property of Line.
    
    Parameters:
    x2 - X2 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineY1
```
void setLineY1(Double y1,
             int ROIIndex,
             int shapeIndex)
```
    Set the Y1 property of Line.
    
    Parameters:
    y1 - Y1 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setLineY2
```
void setLineY2(Double y2,
             int ROIIndex,
             int shapeIndex)
```
    Set the Y2 property of Line.
    
    Parameters:
    y2 - Y2 to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setListAnnotationAnnotationRef
```
void setListAnnotationAnnotationRef(String annotation,
                                  int listAnnotationIndex,
                                  int annotationRefIndex)
```
    Set the AnnotationRef property of ListAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    listAnnotationIndex - the ListAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setListAnnotationAnnotator
```
void setListAnnotationAnnotator(String annotator,
                              int listAnnotationIndex)
```
    Set the Annotator property of ListAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    listAnnotationIndex - the ListAnnotation index.
  - setListAnnotationDescription
```
void setListAnnotationDescription(String description,
                                int listAnnotationIndex)
```
    Set the Description property of ListAnnotation.
    
    Parameters:
    description - Description to set.
    listAnnotationIndex - the ListAnnotation index.
  - setListAnnotationID
```
void setListAnnotationID(String id,
                       int listAnnotationIndex)
```
    Set the ID property of ListAnnotation.
    
    Parameters:
    id - ID to set.
    listAnnotationIndex - the ListAnnotation index.
  - setListAnnotationNamespace
```
void setListAnnotationNamespace(String namespace,
                              int listAnnotationIndex)
```
    Set the Namespace property of ListAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    listAnnotationIndex - the ListAnnotation index.
  - setLongAnnotationAnnotationRef
```
void setLongAnnotationAnnotationRef(String annotation,
                                  int longAnnotationIndex,
                                  int annotationRefIndex)
```
    Set the AnnotationRef property of LongAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    longAnnotationIndex - the LongAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setLongAnnotationAnnotator
```
void setLongAnnotationAnnotator(String annotator,
                              int longAnnotationIndex)
```
    Set the Annotator property of LongAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationDescription
```
void setLongAnnotationDescription(String description,
                                int longAnnotationIndex)
```
    Set the Description property of LongAnnotation.
    
    Parameters:
    description - Description to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationID
```
void setLongAnnotationID(String id,
                       int longAnnotationIndex)
```
    Set the ID property of LongAnnotation.
    
    Parameters:
    id - ID to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationNamespace
```
void setLongAnnotationNamespace(String namespace,
                              int longAnnotationIndex)
```
    Set the Namespace property of LongAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    longAnnotationIndex - the LongAnnotation index.
  - setLongAnnotationValue
```
void setLongAnnotationValue(Long value,
                          int longAnnotationIndex)
```
    Set the Value property of LongAnnotation.
    
    Parameters:
    value - Value to set.
    longAnnotationIndex - the LongAnnotation index.
  - setMapAnnotationAnnotationRef
```
void setMapAnnotationAnnotationRef(String annotation,
                                 int mapAnnotationIndex,
                                 int annotationRefIndex)
```
    Set the AnnotationRef property of MapAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    mapAnnotationIndex - the MapAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setMapAnnotationAnnotator
```
void setMapAnnotationAnnotator(String annotator,
                             int mapAnnotationIndex)
```
    Set the Annotator property of MapAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMapAnnotationDescription
```
void setMapAnnotationDescription(String description,
                               int mapAnnotationIndex)
```
    Set the Description property of MapAnnotation.
    
    Parameters:
    description - Description to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMapAnnotationID
```
void setMapAnnotationID(String id,
                      int mapAnnotationIndex)
```
    Set the ID property of MapAnnotation.
    
    Parameters:
    id - ID to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMapAnnotationNamespace
```
void setMapAnnotationNamespace(String namespace,
                             int mapAnnotationIndex)
```
    Set the Namespace property of MapAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    mapAnnotationIndex - the MapAnnotation index.
  - setMaskAnnotationRef
```
void setMaskAnnotationRef(String annotation,
                        int ROIIndex,
                        int shapeIndex,
                        int annotationRefIndex)
```
    Set the AnnotationRef property of Mask.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setMaskFillColor
```
void setMaskFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FillColor property of Mask.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFillRule
```
void setMaskFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the FillRule property of Mask.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFontFamily
```
void setMaskFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the FontFamily property of Mask.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFontSize
```
void setMaskFontSize(Length fontSize,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the FontSize property of Mask.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskFontStyle
```
void setMaskFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FontStyle property of Mask.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskID
```
void setMaskID(String id,
             int ROIIndex,
             int shapeIndex)
```
    Set the ID property of Mask.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskLineCap
```
void setMaskLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the LineCap property of Mask.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskLocked
```
void setMaskLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)
```
    Set the Locked property of Mask.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskStrokeColor
```
void setMaskStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the StrokeColor property of Mask.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskStrokeDashArray
```
void setMaskStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)
```
    Set the StrokeDashArray property of Mask.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskStrokeWidth
```
void setMaskStrokeWidth(Length strokeWidth,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the StrokeWidth property of Mask.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskText
```
void setMaskText(String text,
               int ROIIndex,
               int shapeIndex)
```
    Set the Text property of Mask.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTheC
```
void setMaskTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)
```
    Set the TheC property of Mask.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTheT
```
void setMaskTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)
```
    Set the TheT property of Mask.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTheZ
```
void setMaskTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)
```
    Set the TheZ property of Mask.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskTransform
```
void setMaskTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the Transform property of Mask.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskVisible
```
void setMaskVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the Visible property of Mask.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskHeight
```
void setMaskHeight(Double height,
                 int ROIIndex,
                 int shapeIndex)
```
    Set the Height property of Mask.
    
    Parameters:
    height - Height to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskWidth
```
void setMaskWidth(Double width,
                int ROIIndex,
                int shapeIndex)
```
    Set the Width property of Mask.
    
    Parameters:
    width - Width to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskX
```
void setMaskX(Double x,
            int ROIIndex,
            int shapeIndex)
```
    Set the X property of Mask.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMaskY
```
void setMaskY(Double y,
            int ROIIndex,
            int shapeIndex)
```
    Set the Y property of Mask.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setMicrobeamManipulationDescription
```
void setMicrobeamManipulationDescription(String description,
                                       int experimentIndex,
                                       int microbeamManipulationIndex)
```
    Set the Description property of MicrobeamManipulation.
    
    Parameters:
    description - Description to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicrobeamManipulationExperimenterRef
```
void setMicrobeamManipulationExperimenterRef(String experimenter,
                                           int experimentIndex,
                                           int microbeamManipulationIndex)
```
    Set the ExperimenterRef property of MicrobeamManipulation.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicrobeamManipulationID
```
void setMicrobeamManipulationID(String id,
                              int experimentIndex,
                              int microbeamManipulationIndex)
```
    Set the ID property of MicrobeamManipulation.
    
    Parameters:
    id - ID to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicrobeamManipulationROIRef
```
void setMicrobeamManipulationROIRef(String roi,
                                  int experimentIndex,
                                  int microbeamManipulationIndex,
                                  int ROIRefIndex)
```
    Set the ROIRef property of MicrobeamManipulation.
    
    Parameters:
    roi - ROIRef to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
    ROIRefIndex - ROIRef index (unused).
  - setMicrobeamManipulationType
```
void setMicrobeamManipulationType(MicrobeamManipulationType type,
                                int experimentIndex,
                                int microbeamManipulationIndex)
```
    Set the Type property of MicrobeamManipulation.
    
    Parameters:
    type - Type to set.
    experimentIndex - the Experiment index.
    microbeamManipulationIndex - the MicrobeamManipulation index.
  - setMicroscopeLotNumber
```
void setMicroscopeLotNumber(String lotNumber,
                          int instrumentIndex)
```
    Set the LotNumber property of Microscope.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeManufacturer
```
void setMicroscopeManufacturer(String manufacturer,
                             int instrumentIndex)
```
    Set the Manufacturer property of Microscope.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeModel
```
void setMicroscopeModel(String model,
                      int instrumentIndex)
```
    Set the Model property of Microscope.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeSerialNumber
```
void setMicroscopeSerialNumber(String serialNumber,
                             int instrumentIndex)
```
    Set the SerialNumber property of Microscope.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
  - setMicroscopeType
```
void setMicroscopeType(MicroscopeType type,
                     int instrumentIndex)
```
    Set the Type property of Microscope.
    
    Parameters:
    type - Type to set.
    instrumentIndex - the Instrument index.
  - setObjectiveAnnotationRef
```
void setObjectiveAnnotationRef(String annotation,
                             int instrumentIndex,
                             int objectiveIndex,
                             int annotationRefIndex)
```
    Set the AnnotationRef property of Objective.
    
    Parameters:
    annotation - AnnotationRef to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
    annotationRefIndex - AnnotationRef index (unused).
  - setObjectiveCalibratedMagnification
```
void setObjectiveCalibratedMagnification(Double calibratedMagnification,
                                       int instrumentIndex,
                                       int objectiveIndex)
```
    Set the CalibratedMagnification property of Objective.
    
    Parameters:
    calibratedMagnification - CalibratedMagnification to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveCorrection
```
void setObjectiveCorrection(Correction correction,
                          int instrumentIndex,
                          int objectiveIndex)
```
    Set the Correction property of Objective.
    
    Parameters:
    correction - Correction to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveID
```
void setObjectiveID(String id,
                  int instrumentIndex,
                  int objectiveIndex)
```
    Set the ID property of Objective.
    
    Parameters:
    id - ID to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveImmersion
```
void setObjectiveImmersion(Immersion immersion,
                         int instrumentIndex,
                         int objectiveIndex)
```
    Set the Immersion property of Objective.
    
    Parameters:
    immersion - Immersion to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveIris
```
void setObjectiveIris(Boolean iris,
                    int instrumentIndex,
                    int objectiveIndex)
```
    Set the Iris property of Objective.
    
    Parameters:
    iris - Iris to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveLensNA
```
void setObjectiveLensNA(Double lensNA,
                      int instrumentIndex,
                      int objectiveIndex)
```
    Set the LensNA property of Objective.
    
    Parameters:
    lensNA - LensNA to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveLotNumber
```
void setObjectiveLotNumber(String lotNumber,
                         int instrumentIndex,
                         int objectiveIndex)
```
    Set the LotNumber property of Objective.
    
    Parameters:
    lotNumber - LotNumber to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveManufacturer
```
void setObjectiveManufacturer(String manufacturer,
                            int instrumentIndex,
                            int objectiveIndex)
```
    Set the Manufacturer property of Objective.
    
    Parameters:
    manufacturer - Manufacturer to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveModel
```
void setObjectiveModel(String model,
                     int instrumentIndex,
                     int objectiveIndex)
```
    Set the Model property of Objective.
    
    Parameters:
    model - Model to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveNominalMagnification
```
void setObjectiveNominalMagnification(Double nominalMagnification,
                                    int instrumentIndex,
                                    int objectiveIndex)
```
    Set the NominalMagnification property of Objective.
    
    Parameters:
    nominalMagnification - NominalMagnification to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveSerialNumber
```
void setObjectiveSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int objectiveIndex)
```
    Set the SerialNumber property of Objective.
    
    Parameters:
    serialNumber - SerialNumber to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveWorkingDistance
```
void setObjectiveWorkingDistance(Length workingDistance,
                               int instrumentIndex,
                               int objectiveIndex)
```
    Set the WorkingDistance property of Objective.
    
    Parameters:
    workingDistance - WorkingDistance to set.
    instrumentIndex - the Instrument index.
    objectiveIndex - the Objective index.
  - setObjectiveSettingsCorrectionCollar
```
void setObjectiveSettingsCorrectionCollar(Double correctionCollar,
                                        int imageIndex)
```
    Set the CorrectionCollar property of ObjectiveSettings.
    
    Parameters:
    correctionCollar - CorrectionCollar to set.
    imageIndex - the Image index.
  - setObjectiveSettingsID
```
void setObjectiveSettingsID(String id,
                          int imageIndex)
```
    Set the ID property of ObjectiveSettings.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
  - setObjectiveSettingsMedium
```
void setObjectiveSettingsMedium(Medium medium,
                              int imageIndex)
```
    Set the Medium property of ObjectiveSettings.
    
    Parameters:
    medium - Medium to set.
    imageIndex - the Image index.
  - setObjectiveSettingsRefractiveIndex
```
void setObjectiveSettingsRefractiveIndex(Double refractiveIndex,
                                       int imageIndex)
```
    Set the RefractiveIndex property of ObjectiveSettings.
    
    Parameters:
    refractiveIndex - RefractiveIndex to set.
    imageIndex - the Image index.
  - setPixelsBigEndian
```
void setPixelsBigEndian(Boolean bigEndian,
                      int imageIndex)
```
    Set the BigEndian property of Pixels.
    
    Parameters:
    bigEndian - BigEndian to set.
    imageIndex - the Image index.
  - setPixelsDimensionOrder
```
void setPixelsDimensionOrder(DimensionOrder dimensionOrder,
                           int imageIndex)
```
    Set the DimensionOrder property of Pixels.
    
    Parameters:
    dimensionOrder - DimensionOrder to set.
    imageIndex - the Image index.
  - setPixelsID
```
void setPixelsID(String id,
               int imageIndex)
```
    Set the ID property of Pixels.
    
    Parameters:
    id - ID to set.
    imageIndex - the Image index.
  - setPixelsInterleaved
```
void setPixelsInterleaved(Boolean interleaved,
                        int imageIndex)
```
    Set the Interleaved property of Pixels.
    
    Parameters:
    interleaved - Interleaved to set.
    imageIndex - the Image index.
  - setPixelsPhysicalSizeX
```
void setPixelsPhysicalSizeX(Length physicalSizeX,
                          int imageIndex)
```
    Set the PhysicalSizeX property of Pixels.
    
    Parameters:
    physicalSizeX - PhysicalSizeX to set.
    imageIndex - the Image index.
  - setPixelsPhysicalSizeY
```
void setPixelsPhysicalSizeY(Length physicalSizeY,
                          int imageIndex)
```
    Set the PhysicalSizeY property of Pixels.
    
    Parameters:
    physicalSizeY - PhysicalSizeY to set.
    imageIndex - the Image index.
  - setPixelsPhysicalSizeZ
```
void setPixelsPhysicalSizeZ(Length physicalSizeZ,
                          int imageIndex)
```
    Set the PhysicalSizeZ property of Pixels.
    
    Parameters:
    physicalSizeZ - PhysicalSizeZ to set.
    imageIndex - the Image index.
  - setPixelsSignificantBits
```
void setPixelsSignificantBits(PositiveInteger significantBits,
                            int imageIndex)
```
    Set the SignificantBits property of Pixels.
    
    Parameters:
    significantBits - SignificantBits to set.
    imageIndex - the Image index.
  - setPixelsSizeC
```
void setPixelsSizeC(PositiveInteger sizeC,
                  int imageIndex)
```
    Set the SizeC property of Pixels.
    
    Parameters:
    sizeC - SizeC to set.
    imageIndex - the Image index.
  - setPixelsSizeT
```
void setPixelsSizeT(PositiveInteger sizeT,
                  int imageIndex)
```
    Set the SizeT property of Pixels.
    
    Parameters:
    sizeT - SizeT to set.
    imageIndex - the Image index.
  - setPixelsSizeX
```
void setPixelsSizeX(PositiveInteger sizeX,
                  int imageIndex)
```
    Set the SizeX property of Pixels.
    
    Parameters:
    sizeX - SizeX to set.
    imageIndex - the Image index.
  - setPixelsSizeY
```
void setPixelsSizeY(PositiveInteger sizeY,
                  int imageIndex)
```
    Set the SizeY property of Pixels.
    
    Parameters:
    sizeY - SizeY to set.
    imageIndex - the Image index.
  - setPixelsSizeZ
```
void setPixelsSizeZ(PositiveInteger sizeZ,
                  int imageIndex)
```
    Set the SizeZ property of Pixels.
    
    Parameters:
    sizeZ - SizeZ to set.
    imageIndex - the Image index.
  - setPixelsTimeIncrement
```
void setPixelsTimeIncrement(Time timeIncrement,
                          int imageIndex)
```
    Set the TimeIncrement property of Pixels.
    
    Parameters:
    timeIncrement - TimeIncrement to set.
    imageIndex - the Image index.
  - setPixelsType
```
void setPixelsType(PixelType type,
                 int imageIndex)
```
    Set the Type property of Pixels.
    
    Parameters:
    type - Type to set.
    imageIndex - the Image index.
  - setPlaneAnnotationRef
```
void setPlaneAnnotationRef(String annotation,
                         int imageIndex,
                         int planeIndex,
                         int annotationRefIndex)
```
    Set the AnnotationRef property of Plane.
    
    Parameters:
    annotation - AnnotationRef to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPlaneDeltaT
```
void setPlaneDeltaT(Time deltaT,
                  int imageIndex,
                  int planeIndex)
```
    Set the DeltaT property of Plane.
    
    Parameters:
    deltaT - DeltaT to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneExposureTime
```
void setPlaneExposureTime(Time exposureTime,
                        int imageIndex,
                        int planeIndex)
```
    Set the ExposureTime property of Plane.
    
    Parameters:
    exposureTime - ExposureTime to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneHashSHA1
```
void setPlaneHashSHA1(String hashSHA1,
                    int imageIndex,
                    int planeIndex)
```
    Set the HashSHA1 property of Plane.
    
    Parameters:
    hashSHA1 - HashSHA1 to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlanePositionX
```
void setPlanePositionX(Length positionX,
                     int imageIndex,
                     int planeIndex)
```
    Set the PositionX property of Plane.
    
    Parameters:
    positionX - PositionX to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlanePositionY
```
void setPlanePositionY(Length positionY,
                     int imageIndex,
                     int planeIndex)
```
    Set the PositionY property of Plane.
    
    Parameters:
    positionY - PositionY to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlanePositionZ
```
void setPlanePositionZ(Length positionZ,
                     int imageIndex,
                     int planeIndex)
```
    Set the PositionZ property of Plane.
    
    Parameters:
    positionZ - PositionZ to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneTheC
```
void setPlaneTheC(NonNegativeInteger theC,
                int imageIndex,
                int planeIndex)
```
    Set the TheC property of Plane.
    
    Parameters:
    theC - TheC to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneTheT
```
void setPlaneTheT(NonNegativeInteger theT,
                int imageIndex,
                int planeIndex)
```
    Set the TheT property of Plane.
    
    Parameters:
    theT - TheT to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlaneTheZ
```
void setPlaneTheZ(NonNegativeInteger theZ,
                int imageIndex,
                int planeIndex)
```
    Set the TheZ property of Plane.
    
    Parameters:
    theZ - TheZ to set.
    imageIndex - the Image index.
    planeIndex - the Plane index.
  - setPlateAnnotationRef
```
void setPlateAnnotationRef(String annotation,
                         int plateIndex,
                         int annotationRefIndex)
```
    Set the AnnotationRef property of Plate.
    
    Parameters:
    annotation - AnnotationRef to set.
    plateIndex - the Plate index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPlateColumnNamingConvention
```
void setPlateColumnNamingConvention(NamingConvention columnNamingConvention,
                                  int plateIndex)
```
    Set the ColumnNamingConvention property of Plate.
    
    Parameters:
    columnNamingConvention - ColumnNamingConvention to set.
    plateIndex - the Plate index.
  - setPlateColumns
```
void setPlateColumns(PositiveInteger columns,
                   int plateIndex)
```
    Set the Columns property of Plate.
    
    Parameters:
    columns - Columns to set.
    plateIndex - the Plate index.
  - setPlateDescription
```
void setPlateDescription(String description,
                       int plateIndex)
```
    Set the Description property of Plate.
    
    Parameters:
    description - Description to set.
    plateIndex - the Plate index.
  - setPlateExternalIdentifier
```
void setPlateExternalIdentifier(String externalIdentifier,
                              int plateIndex)
```
    Set the ExternalIdentifier property of Plate.
    
    Parameters:
    externalIdentifier - ExternalIdentifier to set.
    plateIndex - the Plate index.
  - setPlateFieldIndex
```
void setPlateFieldIndex(NonNegativeInteger fieldIndex,
                      int plateIndex)
```
    Set the FieldIndex property of Plate.
    
    Parameters:
    fieldIndex - FieldIndex to set.
    plateIndex - the Plate index.
  - setPlateID
```
void setPlateID(String id,
              int plateIndex)
```
    Set the ID property of Plate.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
  - setPlateName
```
void setPlateName(String name,
                int plateIndex)
```
    Set the Name property of Plate.
    
    Parameters:
    name - Name to set.
    plateIndex - the Plate index.
  - setPlateRowNamingConvention
```
void setPlateRowNamingConvention(NamingConvention rowNamingConvention,
                               int plateIndex)
```
    Set the RowNamingConvention property of Plate.
    
    Parameters:
    rowNamingConvention - RowNamingConvention to set.
    plateIndex - the Plate index.
  - setPlateRows
```
void setPlateRows(PositiveInteger rows,
                int plateIndex)
```
    Set the Rows property of Plate.
    
    Parameters:
    rows - Rows to set.
    plateIndex - the Plate index.
  - setPlateStatus
```
void setPlateStatus(String status,
                  int plateIndex)
```
    Set the Status property of Plate.
    
    Parameters:
    status - Status to set.
    plateIndex - the Plate index.
  - setPlateWellOriginX
```
void setPlateWellOriginX(Length wellOriginX,
                       int plateIndex)
```
    Set the WellOriginX property of Plate.
    
    Parameters:
    wellOriginX - WellOriginX to set.
    plateIndex - the Plate index.
  - setPlateWellOriginY
```
void setPlateWellOriginY(Length wellOriginY,
                       int plateIndex)
```
    Set the WellOriginY property of Plate.
    
    Parameters:
    wellOriginY - WellOriginY to set.
    plateIndex - the Plate index.
  - setPlateAcquisitionAnnotationRef
```
void setPlateAcquisitionAnnotationRef(String annotation,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int annotationRefIndex)
```
    Set the AnnotationRef property of PlateAcquisition.
    
    Parameters:
    annotation - AnnotationRef to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPlateAcquisitionDescription
```
void setPlateAcquisitionDescription(String description,
                                  int plateIndex,
                                  int plateAcquisitionIndex)
```
    Set the Description property of PlateAcquisition.
    
    Parameters:
    description - Description to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionEndTime
```
void setPlateAcquisitionEndTime(Timestamp endTime,
                              int plateIndex,
                              int plateAcquisitionIndex)
```
    Set the EndTime property of PlateAcquisition.
    
    Parameters:
    endTime - EndTime to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionID
```
void setPlateAcquisitionID(String id,
                         int plateIndex,
                         int plateAcquisitionIndex)
```
    Set the ID property of PlateAcquisition.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionMaximumFieldCount
```
void setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
                                        int plateIndex,
                                        int plateAcquisitionIndex)
```
    Set the MaximumFieldCount property of PlateAcquisition.
    
    Parameters:
    maximumFieldCount - MaximumFieldCount to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionName
```
void setPlateAcquisitionName(String name,
                           int plateIndex,
                           int plateAcquisitionIndex)
```
    Set the Name property of PlateAcquisition.
    
    Parameters:
    name - Name to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionStartTime
```
void setPlateAcquisitionStartTime(Timestamp startTime,
                                int plateIndex,
                                int plateAcquisitionIndex)
```
    Set the StartTime property of PlateAcquisition.
    
    Parameters:
    startTime - StartTime to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
  - setPlateAcquisitionWellSampleRef
```
void setPlateAcquisitionWellSampleRef(String wellSample,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int wellSampleRefIndex)
```
    Set the WellSampleRef property of PlateAcquisition.
    
    Parameters:
    wellSample - WellSampleRef to set.
    plateIndex - the Plate index.
    plateAcquisitionIndex - the PlateAcquisition index.
    wellSampleRefIndex - WellSampleRef index (unused).
  - setPointAnnotationRef
```
void setPointAnnotationRef(String annotation,
                         int ROIIndex,
                         int shapeIndex,
                         int annotationRefIndex)
```
    Set the AnnotationRef property of Point.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPointFillColor
```
void setPointFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the FillColor property of Point.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFillRule
```
void setPointFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FillRule property of Point.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFontFamily
```
void setPointFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the FontFamily property of Point.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFontSize
```
void setPointFontSize(Length fontSize,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the FontSize property of Point.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointFontStyle
```
void setPointFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the FontStyle property of Point.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointID
```
void setPointID(String id,
              int ROIIndex,
              int shapeIndex)
```
    Set the ID property of Point.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointLineCap
```
void setPointLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the LineCap property of Point.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointLocked
```
void setPointLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the Locked property of Point.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointStrokeColor
```
void setPointStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the StrokeColor property of Point.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointStrokeDashArray
```
void setPointStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)
```
    Set the StrokeDashArray property of Point.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointStrokeWidth
```
void setPointStrokeWidth(Length strokeWidth,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the StrokeWidth property of Point.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointText
```
void setPointText(String text,
                int ROIIndex,
                int shapeIndex)
```
    Set the Text property of Point.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTheC
```
void setPointTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)
```
    Set the TheC property of Point.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTheT
```
void setPointTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)
```
    Set the TheT property of Point.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTheZ
```
void setPointTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)
```
    Set the TheZ property of Point.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointTransform
```
void setPointTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the Transform property of Point.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointVisible
```
void setPointVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the Visible property of Point.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointX
```
void setPointX(Double x,
             int ROIIndex,
             int shapeIndex)
```
    Set the X property of Point.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPointY
```
void setPointY(Double y,
             int ROIIndex,
             int shapeIndex)
```
    Set the Y property of Point.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonAnnotationRef
```
void setPolygonAnnotationRef(String annotation,
                           int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)
```
    Set the AnnotationRef property of Polygon.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPolygonFillColor
```
void setPolygonFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the FillColor property of Polygon.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFillRule
```
void setPolygonFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the FillRule property of Polygon.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFontFamily
```
void setPolygonFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the FontFamily property of Polygon.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFontSize
```
void setPolygonFontSize(Length fontSize,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the FontSize property of Polygon.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonFontStyle
```
void setPolygonFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the FontStyle property of Polygon.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonID
```
void setPolygonID(String id,
                int ROIIndex,
                int shapeIndex)
```
    Set the ID property of Polygon.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonLineCap
```
void setPolygonLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the LineCap property of Polygon.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonLocked
```
void setPolygonLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the Locked property of Polygon.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonStrokeColor
```
void setPolygonStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the StrokeColor property of Polygon.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonStrokeDashArray
```
void setPolygonStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)
```
    Set the StrokeDashArray property of Polygon.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonStrokeWidth
```
void setPolygonStrokeWidth(Length strokeWidth,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the StrokeWidth property of Polygon.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonText
```
void setPolygonText(String text,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the Text property of Polygon.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTheC
```
void setPolygonTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the TheC property of Polygon.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTheT
```
void setPolygonTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the TheT property of Polygon.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTheZ
```
void setPolygonTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the TheZ property of Polygon.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonTransform
```
void setPolygonTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the Transform property of Polygon.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonVisible
```
void setPolygonVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the Visible property of Polygon.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolygonPoints
```
void setPolygonPoints(String points,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the Points property of Polygon.
    
    Parameters:
    points - Points to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineAnnotationRef
```
void setPolylineAnnotationRef(String annotation,
                            int ROIIndex,
                            int shapeIndex,
                            int annotationRefIndex)
```
    Set the AnnotationRef property of Polyline.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setPolylineFillColor
```
void setPolylineFillColor(Color fillColor,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the FillColor property of Polyline.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFillRule
```
void setPolylineFillRule(FillRule fillRule,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the FillRule property of Polyline.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFontFamily
```
void setPolylineFontFamily(FontFamily fontFamily,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the FontFamily property of Polyline.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFontSize
```
void setPolylineFontSize(Length fontSize,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the FontSize property of Polyline.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineFontStyle
```
void setPolylineFontStyle(FontStyle fontStyle,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the FontStyle property of Polyline.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineID
```
void setPolylineID(String id,
                 int ROIIndex,
                 int shapeIndex)
```
    Set the ID property of Polyline.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineLineCap
```
void setPolylineLineCap(LineCap lineCap,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the LineCap property of Polyline.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineLocked
```
void setPolylineLocked(Boolean locked,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the Locked property of Polyline.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineStrokeColor
```
void setPolylineStrokeColor(Color strokeColor,
                          int ROIIndex,
                          int shapeIndex)
```
    Set the StrokeColor property of Polyline.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineStrokeDashArray
```
void setPolylineStrokeDashArray(String strokeDashArray,
                              int ROIIndex,
                              int shapeIndex)
```
    Set the StrokeDashArray property of Polyline.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineStrokeWidth
```
void setPolylineStrokeWidth(Length strokeWidth,
                          int ROIIndex,
                          int shapeIndex)
```
    Set the StrokeWidth property of Polyline.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineText
```
void setPolylineText(String text,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the Text property of Polyline.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTheC
```
void setPolylineTheC(NonNegativeInteger theC,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the TheC property of Polyline.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTheT
```
void setPolylineTheT(NonNegativeInteger theT,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the TheT property of Polyline.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTheZ
```
void setPolylineTheZ(NonNegativeInteger theZ,
                   int ROIIndex,
                   int shapeIndex)
```
    Set the TheZ property of Polyline.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineTransform
```
void setPolylineTransform(AffineTransform transform,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the Transform property of Polyline.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineVisible
```
void setPolylineVisible(Boolean visible,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the Visible property of Polyline.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineMarkerEnd
```
void setPolylineMarkerEnd(Marker markerEnd,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the MarkerEnd property of Polyline.
    
    Parameters:
    markerEnd - MarkerEnd to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylineMarkerStart
```
void setPolylineMarkerStart(Marker markerStart,
                          int ROIIndex,
                          int shapeIndex)
```
    Set the MarkerStart property of Polyline.
    
    Parameters:
    markerStart - MarkerStart to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setPolylinePoints
```
void setPolylinePoints(String points,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the Points property of Polyline.
    
    Parameters:
    points - Points to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setProjectAnnotationRef
```
void setProjectAnnotationRef(String annotation,
                           int projectIndex,
                           int annotationRefIndex)
```
    Set the AnnotationRef property of Project.
    
    Parameters:
    annotation - AnnotationRef to set.
    projectIndex - the Project index.
    annotationRefIndex - AnnotationRef index (unused).
  - setProjectDatasetRef
```
void setProjectDatasetRef(String dataset,
                        int projectIndex,
                        int datasetRefIndex)
```
    Set the DatasetRef property of Project.
    
    Parameters:
    dataset - DatasetRef to set.
    projectIndex - the Project index.
    datasetRefIndex - DatasetRef index (unused).
  - setProjectDescription
```
void setProjectDescription(String description,
                         int projectIndex)
```
    Set the Description property of Project.
    
    Parameters:
    description - Description to set.
    projectIndex - the Project index.
  - setProjectExperimenterGroupRef
```
void setProjectExperimenterGroupRef(String experimenterGroup,
                                  int projectIndex)
```
    Set the ExperimenterGroupRef property of Project.
    
    Parameters:
    experimenterGroup - ExperimenterGroupRef to set.
    projectIndex - the Project index.
  - setProjectExperimenterRef
```
void setProjectExperimenterRef(String experimenter,
                             int projectIndex)
```
    Set the ExperimenterRef property of Project.
    
    Parameters:
    experimenter - ExperimenterRef to set.
    projectIndex - the Project index.
  - setProjectID
```
void setProjectID(String id,
                int projectIndex)
```
    Set the ID property of Project.
    
    Parameters:
    id - ID to set.
    projectIndex - the Project index.
  - setProjectName
```
void setProjectName(String name,
                  int projectIndex)
```
    Set the Name property of Project.
    
    Parameters:
    name - Name to set.
    projectIndex - the Project index.
  - setROIAnnotationRef
```
void setROIAnnotationRef(String annotation,
                       int ROIIndex,
                       int annotationRefIndex)
```
    Set the AnnotationRef property of ROI.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    annotationRefIndex - AnnotationRef index (unused).
  - setROIDescription
```
void setROIDescription(String description,
                     int ROIIndex)
```
    Set the Description property of ROI.
    
    Parameters:
    description - Description to set.
    ROIIndex - the ROI index.
  - setROIID
```
void setROIID(String id,
            int ROIIndex)
```
    Set the ID property of ROI.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
  - setROIName
```
void setROIName(String name,
              int ROIIndex)
```
    Set the Name property of ROI.
    
    Parameters:
    name - Name to set.
    ROIIndex - the ROI index.
  - setROINamespace
```
void setROINamespace(String namespace,
                   int ROIIndex)
```
    Set the Namespace property of ROI.
    
    Parameters:
    namespace - Namespace to set.
    ROIIndex - the ROI index.
  - setReagentAnnotationRef
```
void setReagentAnnotationRef(String annotation,
                           int screenIndex,
                           int reagentIndex,
                           int annotationRefIndex)
```
    Set the AnnotationRef property of Reagent.
    
    Parameters:
    annotation - AnnotationRef to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
    annotationRefIndex - AnnotationRef index (unused).
  - setReagentDescription
```
void setReagentDescription(String description,
                         int screenIndex,
                         int reagentIndex)
```
    Set the Description property of Reagent.
    
    Parameters:
    description - Description to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setReagentID
```
void setReagentID(String id,
                int screenIndex,
                int reagentIndex)
```
    Set the ID property of Reagent.
    
    Parameters:
    id - ID to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setReagentName
```
void setReagentName(String name,
                  int screenIndex,
                  int reagentIndex)
```
    Set the Name property of Reagent.
    
    Parameters:
    name - Name to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setReagentReagentIdentifier
```
void setReagentReagentIdentifier(String reagentIdentifier,
                               int screenIndex,
                               int reagentIndex)
```
    Set the ReagentIdentifier property of Reagent.
    
    Parameters:
    reagentIdentifier - ReagentIdentifier to set.
    screenIndex - the Screen index.
    reagentIndex - the Reagent index.
  - setRectangleAnnotationRef
```
void setRectangleAnnotationRef(String annotation,
                             int ROIIndex,
                             int shapeIndex,
                             int annotationRefIndex)
```
    Set the AnnotationRef property of Rectangle.
    
    Parameters:
    annotation - AnnotationRef to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
    annotationRefIndex - AnnotationRef index (unused).
  - setRectangleFillColor
```
void setRectangleFillColor(Color fillColor,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the FillColor property of Rectangle.
    
    Parameters:
    fillColor - FillColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFillRule
```
void setRectangleFillRule(FillRule fillRule,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the FillRule property of Rectangle.
    
    Parameters:
    fillRule - FillRule to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFontFamily
```
void setRectangleFontFamily(FontFamily fontFamily,
                          int ROIIndex,
                          int shapeIndex)
```
    Set the FontFamily property of Rectangle.
    
    Parameters:
    fontFamily - FontFamily to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFontSize
```
void setRectangleFontSize(Length fontSize,
                        int ROIIndex,
                        int shapeIndex)
```
    Set the FontSize property of Rectangle.
    
    Parameters:
    fontSize - FontSize to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleFontStyle
```
void setRectangleFontStyle(FontStyle fontStyle,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the FontStyle property of Rectangle.
    
    Parameters:
    fontStyle - FontStyle to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleID
```
void setRectangleID(String id,
                  int ROIIndex,
                  int shapeIndex)
```
    Set the ID property of Rectangle.
    
    Parameters:
    id - ID to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleLineCap
```
void setRectangleLineCap(LineCap lineCap,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the LineCap property of Rectangle.
    
    Parameters:
    lineCap - LineCap to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleLocked
```
void setRectangleLocked(Boolean locked,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the Locked property of Rectangle.
    
    Parameters:
    locked - Locked to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleStrokeColor
```
void setRectangleStrokeColor(Color strokeColor,
                           int ROIIndex,
                           int shapeIndex)
```
    Set the StrokeColor property of Rectangle.
    
    Parameters:
    strokeColor - StrokeColor to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleStrokeDashArray
```
void setRectangleStrokeDashArray(String strokeDashArray,
                               int ROIIndex,
                               int shapeIndex)
```
    Set the StrokeDashArray property of Rectangle.
    
    Parameters:
    strokeDashArray - StrokeDashArray to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleStrokeWidth
```
void setRectangleStrokeWidth(Length strokeWidth,
                           int ROIIndex,
                           int shapeIndex)
```
    Set the StrokeWidth property of Rectangle.
    
    Parameters:
    strokeWidth - StrokeWidth to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleText
```
void setRectangleText(String text,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the Text property of Rectangle.
    
    Parameters:
    text - Text to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTheC
```
void setRectangleTheC(NonNegativeInteger theC,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the TheC property of Rectangle.
    
    Parameters:
    theC - TheC to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTheT
```
void setRectangleTheT(NonNegativeInteger theT,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the TheT property of Rectangle.
    
    Parameters:
    theT - TheT to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTheZ
```
void setRectangleTheZ(NonNegativeInteger theZ,
                    int ROIIndex,
                    int shapeIndex)
```
    Set the TheZ property of Rectangle.
    
    Parameters:
    theZ - TheZ to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleTransform
```
void setRectangleTransform(AffineTransform transform,
                         int ROIIndex,
                         int shapeIndex)
```
    Set the Transform property of Rectangle.
    
    Parameters:
    transform - Transform to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleVisible
```
void setRectangleVisible(Boolean visible,
                       int ROIIndex,
                       int shapeIndex)
```
    Set the Visible property of Rectangle.
    
    Parameters:
    visible - Visible to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleHeight
```
void setRectangleHeight(Double height,
                      int ROIIndex,
                      int shapeIndex)
```
    Set the Height property of Rectangle.
    
    Parameters:
    height - Height to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleWidth
```
void setRectangleWidth(Double width,
                     int ROIIndex,
                     int shapeIndex)
```
    Set the Width property of Rectangle.
    
    Parameters:
    width - Width to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleX
```
void setRectangleX(Double x,
                 int ROIIndex,
                 int shapeIndex)
```
    Set the X property of Rectangle.
    
    Parameters:
    x - X to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRectangleY
```
void setRectangleY(Double y,
                 int ROIIndex,
                 int shapeIndex)
```
    Set the Y property of Rectangle.
    
    Parameters:
    y - Y to set.
    ROIIndex - the ROI index.
    shapeIndex - the Shape index.
  - setRightsRightsHeld
```
void setRightsRightsHeld(String rightsHeld)
```
    Set the RightsHeld property of Rights.
    
    Parameters:
    rightsHeld - RightsHeld to set.
  - setRightsRightsHolder
```
void setRightsRightsHolder(String rightsHolder)
```
    Set the RightsHolder property of Rights.
    
    Parameters:
    rightsHolder - RightsHolder to set.
  - setScreenAnnotationRef
```
void setScreenAnnotationRef(String annotation,
                          int screenIndex,
                          int annotationRefIndex)
```
    Set the AnnotationRef property of Screen.
    
    Parameters:
    annotation - AnnotationRef to set.
    screenIndex - the Screen index.
    annotationRefIndex - AnnotationRef index (unused).
  - setScreenDescription
```
void setScreenDescription(String description,
                        int screenIndex)
```
    Set the Description property of Screen.
    
    Parameters:
    description - Description to set.
    screenIndex - the Screen index.
  - setScreenID
```
void setScreenID(String id,
               int screenIndex)
```
    Set the ID property of Screen.
    
    Parameters:
    id - ID to set.
    screenIndex - the Screen index.
  - setScreenName
```
void setScreenName(String name,
                 int screenIndex)
```
    Set the Name property of Screen.
    
    Parameters:
    name - Name to set.
    screenIndex - the Screen index.
  - setScreenPlateRef
```
void setScreenPlateRef(String plate,
                     int screenIndex,
                     int plateRefIndex)
```
    Set the PlateRef property of Screen.
    
    Parameters:
    plate - PlateRef to set.
    screenIndex - the Screen index.
    plateRefIndex - PlateRef index (unused).
  - setScreenProtocolDescription
```
void setScreenProtocolDescription(String protocolDescription,
                                int screenIndex)
```
    Set the ProtocolDescription property of Screen.
    
    Parameters:
    protocolDescription - ProtocolDescription to set.
    screenIndex - the Screen index.
  - setScreenProtocolIdentifier
```
void setScreenProtocolIdentifier(String protocolIdentifier,
                               int screenIndex)
```
    Set the ProtocolIdentifier property of Screen.
    
    Parameters:
    protocolIdentifier - ProtocolIdentifier to set.
    screenIndex - the Screen index.
  - setScreenReagentSetDescription
```
void setScreenReagentSetDescription(String reagentSetDescription,
                                  int screenIndex)
```
    Set the ReagentSetDescription property of Screen.
    
    Parameters:
    reagentSetDescription - ReagentSetDescription to set.
    screenIndex - the Screen index.
  - setScreenReagentSetIdentifier
```
void setScreenReagentSetIdentifier(String reagentSetIdentifier,
                                 int screenIndex)
```
    Set the ReagentSetIdentifier property of Screen.
    
    Parameters:
    reagentSetIdentifier - ReagentSetIdentifier to set.
    screenIndex - the Screen index.
  - setScreenType
```
void setScreenType(String type,
                 int screenIndex)
```
    Set the Type property of Screen.
    
    Parameters:
    type - Type to set.
    screenIndex - the Screen index.
  - setStageLabelName
```
void setStageLabelName(String name,
                     int imageIndex)
```
    Set the Name property of StageLabel.
    
    Parameters:
    name - Name to set.
    imageIndex - the Image index.
  - setStageLabelX
```
void setStageLabelX(Length x,
                  int imageIndex)
```
    Set the X property of StageLabel.
    
    Parameters:
    x - X to set.
    imageIndex - the Image index.
  - setStageLabelY
```
void setStageLabelY(Length y,
                  int imageIndex)
```
    Set the Y property of StageLabel.
    
    Parameters:
    y - Y to set.
    imageIndex - the Image index.
  - setStageLabelZ
```
void setStageLabelZ(Length z,
                  int imageIndex)
```
    Set the Z property of StageLabel.
    
    Parameters:
    z - Z to set.
    imageIndex - the Image index.
  - setTagAnnotationAnnotationRef
```
void setTagAnnotationAnnotationRef(String annotation,
                                 int tagAnnotationIndex,
                                 int annotationRefIndex)
```
    Set the AnnotationRef property of TagAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    tagAnnotationIndex - the TagAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setTagAnnotationAnnotator
```
void setTagAnnotationAnnotator(String annotator,
                             int tagAnnotationIndex)
```
    Set the Annotator property of TagAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationDescription
```
void setTagAnnotationDescription(String description,
                               int tagAnnotationIndex)
```
    Set the Description property of TagAnnotation.
    
    Parameters:
    description - Description to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationID
```
void setTagAnnotationID(String id,
                      int tagAnnotationIndex)
```
    Set the ID property of TagAnnotation.
    
    Parameters:
    id - ID to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationNamespace
```
void setTagAnnotationNamespace(String namespace,
                             int tagAnnotationIndex)
```
    Set the Namespace property of TagAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTagAnnotationValue
```
void setTagAnnotationValue(String value,
                         int tagAnnotationIndex)
```
    Set the Value property of TagAnnotation.
    
    Parameters:
    value - Value to set.
    tagAnnotationIndex - the TagAnnotation index.
  - setTermAnnotationAnnotationRef
```
void setTermAnnotationAnnotationRef(String annotation,
                                  int termAnnotationIndex,
                                  int annotationRefIndex)
```
    Set the AnnotationRef property of TermAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    termAnnotationIndex - the TermAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setTermAnnotationAnnotator
```
void setTermAnnotationAnnotator(String annotator,
                              int termAnnotationIndex)
```
    Set the Annotator property of TermAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationDescription
```
void setTermAnnotationDescription(String description,
                                int termAnnotationIndex)
```
    Set the Description property of TermAnnotation.
    
    Parameters:
    description - Description to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationID
```
void setTermAnnotationID(String id,
                       int termAnnotationIndex)
```
    Set the ID property of TermAnnotation.
    
    Parameters:
    id - ID to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationNamespace
```
void setTermAnnotationNamespace(String namespace,
                              int termAnnotationIndex)
```
    Set the Namespace property of TermAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTermAnnotationValue
```
void setTermAnnotationValue(String value,
                          int termAnnotationIndex)
```
    Set the Value property of TermAnnotation.
    
    Parameters:
    value - Value to set.
    termAnnotationIndex - the TermAnnotation index.
  - setTiffDataFirstC
```
void setTiffDataFirstC(NonNegativeInteger firstC,
                     int imageIndex,
                     int tiffDataIndex)
```
    Set the FirstC property of TiffData.
    
    Parameters:
    firstC - FirstC to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataFirstT
```
void setTiffDataFirstT(NonNegativeInteger firstT,
                     int imageIndex,
                     int tiffDataIndex)
```
    Set the FirstT property of TiffData.
    
    Parameters:
    firstT - FirstT to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataFirstZ
```
void setTiffDataFirstZ(NonNegativeInteger firstZ,
                     int imageIndex,
                     int tiffDataIndex)
```
    Set the FirstZ property of TiffData.
    
    Parameters:
    firstZ - FirstZ to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataIFD
```
void setTiffDataIFD(NonNegativeInteger ifd,
                  int imageIndex,
                  int tiffDataIndex)
```
    Set the IFD property of TiffData.
    
    Parameters:
    ifd - IFD to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTiffDataPlaneCount
```
void setTiffDataPlaneCount(NonNegativeInteger planeCount,
                         int imageIndex,
                         int tiffDataIndex)
```
    Set the PlaneCount property of TiffData.
    
    Parameters:
    planeCount - PlaneCount to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setTimestampAnnotationAnnotationRef
```
void setTimestampAnnotationAnnotationRef(String annotation,
                                       int timestampAnnotationIndex,
                                       int annotationRefIndex)
```
    Set the AnnotationRef property of TimestampAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setTimestampAnnotationAnnotator
```
void setTimestampAnnotationAnnotator(String annotator,
                                   int timestampAnnotationIndex)
```
    Set the Annotator property of TimestampAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationDescription
```
void setTimestampAnnotationDescription(String description,
                                     int timestampAnnotationIndex)
```
    Set the Description property of TimestampAnnotation.
    
    Parameters:
    description - Description to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationID
```
void setTimestampAnnotationID(String id,
                            int timestampAnnotationIndex)
```
    Set the ID property of TimestampAnnotation.
    
    Parameters:
    id - ID to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationNamespace
```
void setTimestampAnnotationNamespace(String namespace,
                                   int timestampAnnotationIndex)
```
    Set the Namespace property of TimestampAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTimestampAnnotationValue
```
void setTimestampAnnotationValue(Timestamp value,
                               int timestampAnnotationIndex)
```
    Set the Value property of TimestampAnnotation.
    
    Parameters:
    value - Value to set.
    timestampAnnotationIndex - the TimestampAnnotation index.
  - setTransmittanceRangeCutIn
```
void setTransmittanceRangeCutIn(Length cutIn,
                              int instrumentIndex,
                              int filterIndex)
```
    Set the CutIn property of TransmittanceRange.
    
    Parameters:
    cutIn - CutIn to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeCutInTolerance
```
void setTransmittanceRangeCutInTolerance(Length cutInTolerance,
                                       int instrumentIndex,
                                       int filterIndex)
```
    Set the CutInTolerance property of TransmittanceRange.
    
    Parameters:
    cutInTolerance - CutInTolerance to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeCutOut
```
void setTransmittanceRangeCutOut(Length cutOut,
                               int instrumentIndex,
                               int filterIndex)
```
    Set the CutOut property of TransmittanceRange.
    
    Parameters:
    cutOut - CutOut to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeCutOutTolerance
```
void setTransmittanceRangeCutOutTolerance(Length cutOutTolerance,
                                        int instrumentIndex,
                                        int filterIndex)
```
    Set the CutOutTolerance property of TransmittanceRange.
    
    Parameters:
    cutOutTolerance - CutOutTolerance to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setTransmittanceRangeTransmittance
```
void setTransmittanceRangeTransmittance(PercentFraction transmittance,
                                      int instrumentIndex,
                                      int filterIndex)
```
    Set the Transmittance property of TransmittanceRange.
    
    Parameters:
    transmittance - Transmittance to set.
    instrumentIndex - the Instrument index.
    filterIndex - the Filter index.
  - setUUIDValue
```
void setUUIDValue(String value,
                int imageIndex,
                int tiffDataIndex)
```
    Set the text value of UUID.
    
    Parameters:
    value - text value.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setUUIDFileName
```
void setUUIDFileName(String fileName,
                   int imageIndex,
                   int tiffDataIndex)
```
    Set the FileName property of UUID.
    
    Parameters:
    fileName - FileName to set.
    imageIndex - the Image index.
    tiffDataIndex - the TiffData index.
  - setWellAnnotationRef
```
void setWellAnnotationRef(String annotation,
                        int plateIndex,
                        int wellIndex,
                        int annotationRefIndex)
```
    Set the AnnotationRef property of Well.
    
    Parameters:
    annotation - AnnotationRef to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    annotationRefIndex - AnnotationRef index (unused).
  - setWellColor
```
void setWellColor(Color color,
                int plateIndex,
                int wellIndex)
```
    Set the Color property of Well.
    
    Parameters:
    color - Color to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellColumn
```
void setWellColumn(NonNegativeInteger column,
                 int plateIndex,
                 int wellIndex)
```
    Set the Column property of Well.
    
    Parameters:
    column - Column to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellExternalDescription
```
void setWellExternalDescription(String externalDescription,
                              int plateIndex,
                              int wellIndex)
```
    Set the ExternalDescription property of Well.
    
    Parameters:
    externalDescription - ExternalDescription to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellExternalIdentifier
```
void setWellExternalIdentifier(String externalIdentifier,
                             int plateIndex,
                             int wellIndex)
```
    Set the ExternalIdentifier property of Well.
    
    Parameters:
    externalIdentifier - ExternalIdentifier to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellID
```
void setWellID(String id,
             int plateIndex,
             int wellIndex)
```
    Set the ID property of Well.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellReagentRef
```
void setWellReagentRef(String reagent,
                     int plateIndex,
                     int wellIndex)
```
    Set the ReagentRef property of Well.
    
    Parameters:
    reagent - ReagentRef to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellRow
```
void setWellRow(NonNegativeInteger row,
              int plateIndex,
              int wellIndex)
```
    Set the Row property of Well.
    
    Parameters:
    row - Row to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellType
```
void setWellType(String type,
               int plateIndex,
               int wellIndex)
```
    Set the Type property of Well.
    
    Parameters:
    type - Type to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
  - setWellSampleID
```
void setWellSampleID(String id,
                   int plateIndex,
                   int wellIndex,
                   int wellSampleIndex)
```
    Set the ID property of WellSample.
    
    Parameters:
    id - ID to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSampleImageRef
```
void setWellSampleImageRef(String image,
                         int plateIndex,
                         int wellIndex,
                         int wellSampleIndex)
```
    Set the ImageRef property of WellSample.
    
    Parameters:
    image - ImageRef to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSampleIndex
```
void setWellSampleIndex(NonNegativeInteger index,
                      int plateIndex,
                      int wellIndex,
                      int wellSampleIndex)
```
    Set the Index property of WellSample.
    
    Parameters:
    index - Index to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSamplePositionX
```
void setWellSamplePositionX(Length positionX,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)
```
    Set the PositionX property of WellSample.
    
    Parameters:
    positionX - PositionX to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSamplePositionY
```
void setWellSamplePositionY(Length positionY,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)
```
    Set the PositionY property of WellSample.
    
    Parameters:
    positionY - PositionY to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setWellSampleTimepoint
```
void setWellSampleTimepoint(Timestamp timepoint,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)
```
    Set the Timepoint property of WellSample.
    
    Parameters:
    timepoint - Timepoint to set.
    plateIndex - the Plate index.
    wellIndex - the Well index.
    wellSampleIndex - the WellSample index.
  - setXMLAnnotationAnnotationRef
```
void setXMLAnnotationAnnotationRef(String annotation,
                                 int XMLAnnotationIndex,
                                 int annotationRefIndex)
```
    Set the AnnotationRef property of XMLAnnotation.
    
    Parameters:
    annotation - AnnotationRef to set.
    XMLAnnotationIndex - the XMLAnnotation index.
    annotationRefIndex - AnnotationRef index (unused).
  - setXMLAnnotationAnnotator
```
void setXMLAnnotationAnnotator(String annotator,
                             int XMLAnnotationIndex)
```
    Set the Annotator property of XMLAnnotation.
    
    Parameters:
    annotator - Annotator to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationDescription
```
void setXMLAnnotationDescription(String description,
                               int XMLAnnotationIndex)
```
    Set the Description property of XMLAnnotation.
    
    Parameters:
    description - Description to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationID
```
void setXMLAnnotationID(String id,
                      int XMLAnnotationIndex)
```
    Set the ID property of XMLAnnotation.
    
    Parameters:
    id - ID to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationNamespace
```
void setXMLAnnotationNamespace(String namespace,
                             int XMLAnnotationIndex)
```
    Set the Namespace property of XMLAnnotation.
    
    Parameters:
    namespace - Namespace to set.
    XMLAnnotationIndex - the XMLAnnotation index.
  - setXMLAnnotationValue
```
void setXMLAnnotationValue(String value,
                         int XMLAnnotationIndex)
```
    Set the Value property of XMLAnnotation.
    
    Parameters:
    value - Value to set.
    XMLAnnotationIndex - the XMLAnnotation index.

Interface MetadataStore

Method Summary

Method Detail

createRoot

getRoot

setRoot

setPixelsBinDataBigEndian

setMaskBinData

setMapAnnotationValue

setGenericExcitationSourceMap

setImagingEnvironmentMap

setUUID

setArcAnnotationRef

setArcID

setArcLotNumber

setArcManufacturer

setArcModel

setArcPower

setArcSerialNumber

setArcType

setBinaryFileFileName

setBinaryFileMIMEType

setBinaryFileSize

setBinaryOnlyMetadataFile

setBinaryOnlyUUID

setBooleanAnnotationAnnotationRef

setBooleanAnnotationAnnotator

setBooleanAnnotationDescription

setBooleanAnnotationID

setBooleanAnnotationNamespace

setBooleanAnnotationValue

setChannelAcquisitionMode

setChannelAnnotationRef

setChannelColor

setChannelContrastMethod

setChannelEmissionWavelength

setChannelExcitationWavelength

setChannelFilterSetRef

setChannelFluor

setChannelID

setChannelIlluminationType

setChannelNDFilter

setChannelName

setChannelPinholeSize

setChannelPockelCellSetting

setChannelSamplesPerPixel

setCommentAnnotationAnnotationRef

setCommentAnnotationAnnotator

setCommentAnnotationDescription

setCommentAnnotationID

setCommentAnnotationNamespace

setCommentAnnotationValue

setDatasetAnnotationRef

setDatasetDescription

setDatasetExperimenterGroupRef

setDatasetExperimenterRef

setDatasetID

setDatasetImageRef

setDatasetName

setDetectorAmplificationGain

setDetectorAnnotationRef

setDetectorGain

setDetectorID

setDetectorLotNumber

setDetectorManufacturer

setDetectorModel

setDetectorOffset

setDetectorSerialNumber

setDetectorType

setDetectorVoltage

setDetectorZoom

setDetectorSettingsBinning

setDetectorSettingsGain

setDetectorSettingsID

setDetectorSettingsIntegration

setDetectorSettingsOffset

setDetectorSettingsReadOutRate

setDetectorSettingsVoltage

setDetectorSettingsZoom

setDichroicAnnotationRef