loci.formats.in

Class LIFReader.ROI

java.lang.Object

loci.formats.in.LIFReader.ROI

Enclosing class:

LIFReader

 class LIFReader.ROI
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static int	ARROW
long	color
String	fontName
String	fontSize
static int	LINE
int	linewidth
String	name
private boolean	normalized
static int	POLYGON
static int	RECTANGLE
double	rotation
static int	SCALE_BAR
double	scaleX
double	scaleY
String	text
static int	TEXT
double	transX
double	transY
int	type
List<Double>	x
List<Double>	y

Constructor Summary

Constructors

Constructor and Description
LIFReader.ROI()

Method Summary

Methods

Modifier and Type	Method and Description
private void	normalize() Vertices and transformation values are not stored in pixel coordinates.
void	storeROI(MetadataStore store, int series, int roi, int roiIndex)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TEXT

public static final int TEXT

See Also:

Constant Field Values

SCALE_BAR

public static final int SCALE_BAR

See Also:

Constant Field Values

POLYGON

public static final int POLYGON

See Also:

Constant Field Values

RECTANGLE

public static final int RECTANGLE

See Also:

Constant Field Values

LINE

public static final int LINE

See Also:

Constant Field Values

ARROW

public static final int ARROW

See Also:

Constant Field Values

type

public int type

x

public List<Double> x

y

public List<Double> y

transX

public double transX

transY

public double transY

scaleX

public double scaleX

scaleY

public double scaleY

rotation

public double rotation

color

public long color

linewidth

public int linewidth

text

public String text

fontName

public String fontName

fontSize

public String fontSize

name

public String name

normalized

private boolean normalized

Constructor Detail

LIFReader.ROI

LIFReader.ROI()

Method Detail

storeROI

public void storeROI(MetadataStore store,
            int series,
            int roi,
            int roiIndex)

normalize

private void normalize()

Vertices and transformation values are not stored in pixel coordinates. We need to convert them from physical coordinates to pixel coordinates so that they can be stored in a MetadataStore.