| Package | Description | 
|---|---|
| loci.formats | 
 Bio-Formats: a library for reading and writing popular microscopy file
formats. 
 | 
| loci.formats.gui | 
 Package containing Bio-Formats graphical user interface code. 
 | 
| loci.plugins.util | 
 Utility classes and methods for the Bio-Formats plugins for ImageJ. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
ChannelFiller
For indexed color data representing true color, factors out
 the indices, replacing them with the color table values directly. 
 | 
class  | 
ChannelMerger
Logic to automatically merge channels in a file. 
 | 
class  | 
ChannelSeparator
Logic to automatically separate the channels in a file. 
 | 
class  | 
DimensionSwapper
Handles swapping the dimension order of an image series. 
 | 
class  | 
FileStitcher
Logic to stitch together files with similar names. 
 | 
class  | 
Memoizer
ReaderWrapper implementation which caches the state of the
 delegate (including and other ReaderWrapper instances)
 after Memoizer.setId(String) has been called. | 
class  | 
MinMaxCalculator
Logic to compute minimum and maximum values for each channel. 
 | 
class  | 
TileStitcher  | 
| Modifier and Type | Method and Description | 
|---|---|
ReaderWrapper | 
ReaderWrapper.duplicate(Class<? extends IFormatReader> imageReaderClass)
Performs a deep copy of the reader, including nested wrapped readers. 
 | 
private ReaderWrapper | 
ReaderWrapper.duplicateRecurse(Class<? extends IFormatReader> imageReaderClass)  | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
BufferedImageReader
A reader wrapper for reading image planes as BufferedImage objects. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
ImageProcessorReader
A low-level reader for  
ImageProcessor objects. | 
class  | 
VirtualReader
TODO 
 | 
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