AggregateMetadata (Bio-Formats API)

java.lang.Object
- ome.xml.meta.AggregateMetadata

All Implemented Interfaces:

BaseMetadata, IMetadata, MetadataRetrieve, MetadataStore
```
public class AggregateMetadata
extends Object
implements IMetadata
```
A metadata store which delegates the actual storage to one or more sub metadata stores.

Author:

Chris Allan callan at blackcat.ca, Curtis Rueden ctrueden at wisc.edu

Field Summary

Fields
Modifier and Type Field and Description

private List<BaseMetadata> delegates
The active metadata store delegates.

Fields
Modifier and Type	Field and Description
`private List<BaseMetadata>`	`delegates` The active metadata store delegates.

Constructor Summary

Constructors
Constructor and Description

AggregateMetadata(List<BaseMetadata> delegates)
Creates a new instance.

Constructors
Constructor and Description
`AggregateMetadata(List<BaseMetadata> delegates)` Creates a new instance.

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`createRoot()`
`String`	`getArcAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`String`	`getArcID(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcModel(int instrumentIndex, int lightSourceIndex)`
`Power`	`getArcPower(int instrumentIndex, int lightSourceIndex)`
`String`	`getArcSerialNumber(int instrumentIndex, int lightSourceIndex)`
`ArcType`	`getArcType(int instrumentIndex, int lightSourceIndex)`
`String`	`getBinaryFileFileName(int fileAnnotationIndex)`
`String`	`getBinaryFileMIMEType(int fileAnnotationIndex)`
`NonNegativeLong`	`getBinaryFileSize(int fileAnnotationIndex)`
`String`	`getBinaryOnlyMetadataFile()`
`String`	`getBinaryOnlyUUID()`
`int`	`getBooleanAnnotationAnnotationCount(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationAnnotationRef(int booleanAnnotationIndex, int annotationRefIndex)`
`String`	`getBooleanAnnotationAnnotator(int booleanAnnotationIndex)`
`int`	`getBooleanAnnotationCount()`
`String`	`getBooleanAnnotationDescription(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationID(int booleanAnnotationIndex)`
`String`	`getBooleanAnnotationNamespace(int booleanAnnotationIndex)`
`Boolean`	`getBooleanAnnotationValue(int booleanAnnotationIndex)`
`AcquisitionMode`	`getChannelAcquisitionMode(int imageIndex, int channelIndex)`
`String`	`getChannelAnnotationRef(int imageIndex, int channelIndex, int annotationRefIndex)`
`int`	`getChannelAnnotationRefCount(int imageIndex, int channelIndex)`
`Color`	`getChannelColor(int imageIndex, int channelIndex)`
`ContrastMethod`	`getChannelContrastMethod(int imageIndex, int channelIndex)`
`int`	`getChannelCount(int imageIndex)`
`Length`	`getChannelEmissionWavelength(int imageIndex, int channelIndex)`
`Length`	`getChannelExcitationWavelength(int imageIndex, int channelIndex)`
`String`	`getChannelFilterSetRef(int imageIndex, int channelIndex)`
`String`	`getChannelFluor(int imageIndex, int channelIndex)`
`String`	`getChannelID(int imageIndex, int channelIndex)`
`IlluminationType`	`getChannelIlluminationType(int imageIndex, int channelIndex)`
`PercentFraction`	`getChannelLightSourceSettingsAttenuation(int imageIndex, int channelIndex)`
`String`	`getChannelLightSourceSettingsID(int imageIndex, int channelIndex)`
`Length`	`getChannelLightSourceSettingsWavelength(int imageIndex, int channelIndex)`
`String`	`getChannelName(int imageIndex, int channelIndex)`
`Double`	`getChannelNDFilter(int imageIndex, int channelIndex)`
`Length`	`getChannelPinholeSize(int imageIndex, int channelIndex)`
`Integer`	`getChannelPockelCellSetting(int imageIndex, int channelIndex)`
`PositiveInteger`	`getChannelSamplesPerPixel(int imageIndex, int channelIndex)`
`int`	`getCommentAnnotationAnnotationCount(int commentAnnotationIndex)`
`String`	`getCommentAnnotationAnnotationRef(int commentAnnotationIndex, int annotationRefIndex)`
`String`	`getCommentAnnotationAnnotator(int commentAnnotationIndex)`
`int`	`getCommentAnnotationCount()`
`String`	`getCommentAnnotationDescription(int commentAnnotationIndex)`
`String`	`getCommentAnnotationID(int commentAnnotationIndex)`
`String`	`getCommentAnnotationNamespace(int commentAnnotationIndex)`
`String`	`getCommentAnnotationValue(int commentAnnotationIndex)`
`String`	`getDatasetAnnotationRef(int datasetIndex, int annotationRefIndex)`
`int`	`getDatasetAnnotationRefCount(int datasetIndex)`
`int`	`getDatasetCount()`
`String`	`getDatasetDescription(int datasetIndex)`
`String`	`getDatasetExperimenterGroupRef(int datasetIndex)`
`String`	`getDatasetExperimenterRef(int datasetIndex)`
`String`	`getDatasetID(int datasetIndex)`
`String`	`getDatasetImageRef(int datasetIndex, int imageRefIndex)`
`int`	`getDatasetImageRefCount(int datasetIndex)`
`String`	`getDatasetName(int datasetIndex)`
`int`	`getDatasetRefCount(int projectIndex)`
`Double`	`getDetectorAmplificationGain(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorAnnotationRef(int instrumentIndex, int detectorIndex, int annotationRefIndex)`
`int`	`getDetectorAnnotationRefCount(int instrumentIndex, int detectorIndex)`
`int`	`getDetectorCount(int instrumentIndex)`
`Double`	`getDetectorGain(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorID(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorLotNumber(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorManufacturer(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorModel(int instrumentIndex, int detectorIndex)`
`Double`	`getDetectorOffset(int instrumentIndex, int detectorIndex)`
`String`	`getDetectorSerialNumber(int instrumentIndex, int detectorIndex)`
`Binning`	`getDetectorSettingsBinning(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsGain(int imageIndex, int channelIndex)`
`String`	`getDetectorSettingsID(int imageIndex, int channelIndex)`
`PositiveInteger`	`getDetectorSettingsIntegration(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsOffset(int imageIndex, int channelIndex)`
`Frequency`	`getDetectorSettingsReadOutRate(int imageIndex, int channelIndex)`
`ElectricPotential`	`getDetectorSettingsVoltage(int imageIndex, int channelIndex)`
`Double`	`getDetectorSettingsZoom(int imageIndex, int channelIndex)`
`DetectorType`	`getDetectorType(int instrumentIndex, int detectorIndex)`
`ElectricPotential`	`getDetectorVoltage(int instrumentIndex, int detectorIndex)`
`Double`	`getDetectorZoom(int instrumentIndex, int detectorIndex)`
`String`	`getDichroicAnnotationRef(int instrumentIndex, int dichroicIndex, int annotationRefIndex)`
`int`	`getDichroicAnnotationRefCount(int instrumentIndex, int dichroicIndex)`
`int`	`getDichroicCount(int instrumentIndex)`
`String`	`getDichroicID(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicLotNumber(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicManufacturer(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicModel(int instrumentIndex, int dichroicIndex)`
`String`	`getDichroicSerialNumber(int instrumentIndex, int dichroicIndex)`
`int`	`getDoubleAnnotationAnnotationCount(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationAnnotationRef(int doubleAnnotationIndex, int annotationRefIndex)`
`String`	`getDoubleAnnotationAnnotator(int doubleAnnotationIndex)`
`int`	`getDoubleAnnotationCount()`
`String`	`getDoubleAnnotationDescription(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationID(int doubleAnnotationIndex)`
`String`	`getDoubleAnnotationNamespace(int doubleAnnotationIndex)`
`Double`	`getDoubleAnnotationValue(int doubleAnnotationIndex)`
`String`	`getEllipseAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getEllipseFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getEllipseFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getEllipseFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getEllipseFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getEllipseFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getEllipseID(int ROIIndex, int shapeIndex)`
`LineCap`	`getEllipseLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getEllipseLocked(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseRadiusX(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseRadiusY(int ROIIndex, int shapeIndex)`
`Color`	`getEllipseStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getEllipseStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getEllipseStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getEllipseText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getEllipseTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getEllipseTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getEllipseTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getEllipseTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getEllipseVisible(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseX(int ROIIndex, int shapeIndex)`
`Double`	`getEllipseY(int ROIIndex, int shapeIndex)`
`int`	`getExperimentCount()`
`String`	`getExperimentDescription(int experimentIndex)`
`String`	`getExperimenterAnnotationRef(int experimenterIndex, int annotationRefIndex)`
`int`	`getExperimenterAnnotationRefCount(int experimenterIndex)`
`int`	`getExperimenterCount()`
`String`	`getExperimenterEmail(int experimenterIndex)`
`String`	`getExperimenterFirstName(int experimenterIndex)`
`String`	`getExperimenterGroupAnnotationRef(int experimenterGroupIndex, int annotationRefIndex)`
`int`	`getExperimenterGroupAnnotationRefCount(int experimenterGroupIndex)`
`int`	`getExperimenterGroupCount()`
`String`	`getExperimenterGroupDescription(int experimenterGroupIndex)`
`String`	`getExperimenterGroupExperimenterRef(int experimenterGroupIndex, int experimenterRefIndex)`
`int`	`getExperimenterGroupExperimenterRefCount(int experimenterGroupIndex)`
`String`	`getExperimenterGroupID(int experimenterGroupIndex)`
`String`	`getExperimenterGroupLeader(int experimenterGroupIndex, int leaderIndex)`
`String`	`getExperimenterGroupName(int experimenterGroupIndex)`
`String`	`getExperimenterID(int experimenterIndex)`
`String`	`getExperimenterInstitution(int experimenterIndex)`
`String`	`getExperimenterLastName(int experimenterIndex)`
`String`	`getExperimenterMiddleName(int experimenterIndex)`
`String`	`getExperimenterUserName(int experimenterIndex)`
`String`	`getExperimentExperimenterRef(int experimentIndex)`
`String`	`getExperimentID(int experimentIndex)`
`ExperimentType`	`getExperimentType(int experimentIndex)`
`String`	`getFilamentAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`String`	`getFilamentID(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentModel(int instrumentIndex, int lightSourceIndex)`
`Power`	`getFilamentPower(int instrumentIndex, int lightSourceIndex)`
`String`	`getFilamentSerialNumber(int instrumentIndex, int lightSourceIndex)`
`FilamentType`	`getFilamentType(int instrumentIndex, int lightSourceIndex)`
`int`	`getFileAnnotationAnnotationCount(int fileAnnotationIndex)`
`String`	`getFileAnnotationAnnotationRef(int fileAnnotationIndex, int annotationRefIndex)`
`String`	`getFileAnnotationAnnotator(int fileAnnotationIndex)`
`int`	`getFileAnnotationCount()`
`String`	`getFileAnnotationDescription(int fileAnnotationIndex)`
`String`	`getFileAnnotationID(int fileAnnotationIndex)`
`String`	`getFileAnnotationNamespace(int fileAnnotationIndex)`
`String`	`getFilterAnnotationRef(int instrumentIndex, int filterIndex, int annotationRefIndex)`
`int`	`getFilterAnnotationRefCount(int instrumentIndex, int filterIndex)`
`int`	`getFilterCount(int instrumentIndex)`
`String`	`getFilterFilterWheel(int instrumentIndex, int filterIndex)`
`String`	`getFilterID(int instrumentIndex, int filterIndex)`
`String`	`getFilterLotNumber(int instrumentIndex, int filterIndex)`
`String`	`getFilterManufacturer(int instrumentIndex, int filterIndex)`
`String`	`getFilterModel(int instrumentIndex, int filterIndex)`
`String`	`getFilterSerialNumber(int instrumentIndex, int filterIndex)`
`int`	`getFilterSetCount(int instrumentIndex)`
`String`	`getFilterSetDichroicRef(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetEmissionFilterRef(int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)`
`int`	`getFilterSetEmissionFilterRefCount(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetExcitationFilterRef(int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)`
`int`	`getFilterSetExcitationFilterRefCount(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetID(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetLotNumber(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetManufacturer(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetModel(int instrumentIndex, int filterSetIndex)`
`String`	`getFilterSetSerialNumber(int instrumentIndex, int filterSetIndex)`
`FilterType`	`getFilterType(int instrumentIndex, int filterIndex)`
`String`	`getGenericExcitationSourceAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`String`	`getGenericExcitationSourceID(int instrumentIndex, int lightSourceIndex)`
`String`	`getGenericExcitationSourceLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getGenericExcitationSourceManufacturer(int instrumentIndex, int lightSourceIndex)`
`List<MapPair>`	`getGenericExcitationSourceMap(int instrumentIndex, int lightSourceIndex)` Gets the Map value associated with this generic light source
`String`	`getGenericExcitationSourceModel(int instrumentIndex, int lightSourceIndex)`
`Power`	`getGenericExcitationSourcePower(int instrumentIndex, int lightSourceIndex)`
`String`	`getGenericExcitationSourceSerialNumber(int instrumentIndex, int lightSourceIndex)`
`Timestamp`	`getImageAcquisitionDate(int imageIndex)`
`String`	`getImageAnnotationRef(int imageIndex, int annotationRefIndex)`
`int`	`getImageAnnotationRefCount(int imageIndex)`
`int`	`getImageCount()`
`String`	`getImageDescription(int imageIndex)`
`String`	`getImageExperimenterGroupRef(int imageIndex)`
`String`	`getImageExperimenterRef(int imageIndex)`
`String`	`getImageExperimentRef(int imageIndex)`
`String`	`getImageID(int imageIndex)`
`String`	`getImageInstrumentRef(int imageIndex)`
`String`	`getImageMicrobeamManipulationRef(int imageIndex, int microbeamManipulationRefIndex)`
`String`	`getImageName(int imageIndex)`
`String`	`getImageROIRef(int imageIndex, int ROIRefIndex)`
`int`	`getImageROIRefCount(int imageIndex)`
`Pressure`	`getImagingEnvironmentAirPressure(int imageIndex)`
`PercentFraction`	`getImagingEnvironmentCO2Percent(int imageIndex)`
`PercentFraction`	`getImagingEnvironmentHumidity(int imageIndex)`
`List<MapPair>`	`getImagingEnvironmentMap(int imageIndex)` Gets the Map value associated with this imaging environment
`Temperature`	`getImagingEnvironmentTemperature(int imageIndex)`
`String`	`getInstrumentAnnotationRef(int instrumentIndex, int annotationRefIndex)`
`int`	`getInstrumentAnnotationRefCount(int instrumentIndex)`
`int`	`getInstrumentCount()`
`String`	`getInstrumentID(int instrumentIndex)`
`String`	`getLabelAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getLabelFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getLabelFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getLabelFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getLabelFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getLabelFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getLabelID(int ROIIndex, int shapeIndex)`
`LineCap`	`getLabelLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getLabelLocked(int ROIIndex, int shapeIndex)`
`Color`	`getLabelStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getLabelStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getLabelStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getLabelText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLabelTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLabelTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLabelTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getLabelTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getLabelVisible(int ROIIndex, int shapeIndex)`
`Double`	`getLabelX(int ROIIndex, int shapeIndex)`
`Double`	`getLabelY(int ROIIndex, int shapeIndex)`
`String`	`getLaserAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`PositiveInteger`	`getLaserFrequencyMultiplication(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserID(int instrumentIndex, int lightSourceIndex)`
`LaserMedium`	`getLaserLaserMedium(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserModel(int instrumentIndex, int lightSourceIndex)`
`Boolean`	`getLaserPockelCell(int instrumentIndex, int lightSourceIndex)`
`Power`	`getLaserPower(int instrumentIndex, int lightSourceIndex)`
`Pulse`	`getLaserPulse(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserPump(int instrumentIndex, int lightSourceIndex)`
`Frequency`	`getLaserRepetitionRate(int instrumentIndex, int lightSourceIndex)`
`String`	`getLaserSerialNumber(int instrumentIndex, int lightSourceIndex)`
`Boolean`	`getLaserTuneable(int instrumentIndex, int lightSourceIndex)`
`LaserType`	`getLaserType(int instrumentIndex, int lightSourceIndex)`
`Length`	`getLaserWavelength(int instrumentIndex, int lightSourceIndex)`
`int`	`getLeaderCount(int experimenterGroupIndex)`
`String`	`getLightEmittingDiodeAnnotationRef(int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`String`	`getLightEmittingDiodeID(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeLotNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeManufacturer(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeModel(int instrumentIndex, int lightSourceIndex)`
`Power`	`getLightEmittingDiodePower(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightEmittingDiodeSerialNumber(int instrumentIndex, int lightSourceIndex)`
`String`	`getLightPathAnnotationRef(int imageIndex, int channelIndex, int annotationRefIndex)`
`int`	`getLightPathAnnotationRefCount(int imageIndex, int channelIndex)`
`String`	`getLightPathDichroicRef(int imageIndex, int channelIndex)`
`String`	`getLightPathEmissionFilterRef(int imageIndex, int channelIndex, int emissionFilterRefIndex)`
`int`	`getLightPathEmissionFilterRefCount(int imageIndex, int channelIndex)`
`String`	`getLightPathExcitationFilterRef(int imageIndex, int channelIndex, int excitationFilterRefIndex)`
`int`	`getLightPathExcitationFilterRefCount(int imageIndex, int channelIndex)`
`int`	`getLightSourceAnnotationRefCount(int instrumentIndex, int lightSourceIndex)`
`int`	`getLightSourceCount(int instrumentIndex)`
`String`	`getLightSourceType(int instrumentIndex, int lightSourceIndex)`
`String`	`getLineAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getLineFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getLineFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getLineFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getLineFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getLineFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getLineID(int ROIIndex, int shapeIndex)`
`LineCap`	`getLineLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getLineLocked(int ROIIndex, int shapeIndex)`
`Marker`	`getLineMarkerEnd(int ROIIndex, int shapeIndex)`
`Marker`	`getLineMarkerStart(int ROIIndex, int shapeIndex)`
`Color`	`getLineStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getLineStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getLineStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getLineText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLineTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLineTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getLineTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getLineTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getLineVisible(int ROIIndex, int shapeIndex)`
`Double`	`getLineX1(int ROIIndex, int shapeIndex)`
`Double`	`getLineX2(int ROIIndex, int shapeIndex)`
`Double`	`getLineY1(int ROIIndex, int shapeIndex)`
`Double`	`getLineY2(int ROIIndex, int shapeIndex)`
`int`	`getListAnnotationAnnotationCount(int listAnnotationIndex)`
`String`	`getListAnnotationAnnotationRef(int listAnnotationIndex, int annotationRefIndex)`
`String`	`getListAnnotationAnnotator(int listAnnotationIndex)`
`int`	`getListAnnotationCount()`
`String`	`getListAnnotationDescription(int listAnnotationIndex)`
`String`	`getListAnnotationID(int listAnnotationIndex)`
`String`	`getListAnnotationNamespace(int listAnnotationIndex)`
`int`	`getLongAnnotationAnnotationCount(int longAnnotationIndex)`
`String`	`getLongAnnotationAnnotationRef(int longAnnotationIndex, int annotationRefIndex)`
`String`	`getLongAnnotationAnnotator(int longAnnotationIndex)`
`int`	`getLongAnnotationCount()`
`String`	`getLongAnnotationDescription(int longAnnotationIndex)`
`String`	`getLongAnnotationID(int longAnnotationIndex)`
`String`	`getLongAnnotationNamespace(int longAnnotationIndex)`
`Long`	`getLongAnnotationValue(int longAnnotationIndex)`
`int`	`getMapAnnotationAnnotationCount(int mapAnnotationIndex)`
`String`	`getMapAnnotationAnnotationRef(int mapAnnotationIndex, int annotationRefIndex)`
`String`	`getMapAnnotationAnnotator(int mapAnnotationIndex)`
`int`	`getMapAnnotationCount()`
`String`	`getMapAnnotationDescription(int mapAnnotationIndex)`
`String`	`getMapAnnotationID(int mapAnnotationIndex)`
`String`	`getMapAnnotationNamespace(int mapAnnotationIndex)`
`List<MapPair>`	`getMapAnnotationValue(int mapAnnotationIndex)` Gets the Map value associated with this annotation
`String`	`getMaskAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getMaskFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getMaskFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getMaskFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getMaskFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getMaskFontStyle(int ROIIndex, int shapeIndex)`
`Double`	`getMaskHeight(int ROIIndex, int shapeIndex)`
`String`	`getMaskID(int ROIIndex, int shapeIndex)`
`LineCap`	`getMaskLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getMaskLocked(int ROIIndex, int shapeIndex)`
`Color`	`getMaskStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getMaskStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getMaskStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getMaskText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getMaskTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getMaskTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getMaskTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getMaskTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getMaskVisible(int ROIIndex, int shapeIndex)`
`Double`	`getMaskWidth(int ROIIndex, int shapeIndex)`
`Double`	`getMaskX(int ROIIndex, int shapeIndex)`
`Double`	`getMaskY(int ROIIndex, int shapeIndex)`
`int`	`getMicrobeamManipulationCount(int experimentIndex)`
`String`	`getMicrobeamManipulationDescription(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicrobeamManipulationExperimenterRef(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicrobeamManipulationID(int experimentIndex, int microbeamManipulationIndex)`
`PercentFraction`	`getMicrobeamManipulationLightSourceSettingsAttenuation(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`int`	`getMicrobeamManipulationLightSourceSettingsCount(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicrobeamManipulationLightSourceSettingsID(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`Length`	`getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`int`	`getMicrobeamManipulationRefCount(int imageIndex)`
`String`	`getMicrobeamManipulationROIRef(int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)`
`int`	`getMicrobeamManipulationROIRefCount(int experimentIndex, int microbeamManipulationIndex)`
`MicrobeamManipulationType`	`getMicrobeamManipulationType(int experimentIndex, int microbeamManipulationIndex)`
`String`	`getMicroscopeLotNumber(int instrumentIndex)`
`String`	`getMicroscopeManufacturer(int instrumentIndex)`
`String`	`getMicroscopeModel(int instrumentIndex)`
`String`	`getMicroscopeSerialNumber(int instrumentIndex)`
`MicroscopeType`	`getMicroscopeType(int instrumentIndex)`
`String`	`getObjectiveAnnotationRef(int instrumentIndex, int objectiveIndex, int annotationRefIndex)`
`int`	`getObjectiveAnnotationRefCount(int instrumentIndex, int objectiveIndex)`
`Double`	`getObjectiveCalibratedMagnification(int instrumentIndex, int objectiveIndex)`
`Correction`	`getObjectiveCorrection(int instrumentIndex, int objectiveIndex)`
`int`	`getObjectiveCount(int instrumentIndex)`
`String`	`getObjectiveID(int instrumentIndex, int objectiveIndex)`
`Immersion`	`getObjectiveImmersion(int instrumentIndex, int objectiveIndex)`
`Boolean`	`getObjectiveIris(int instrumentIndex, int objectiveIndex)`
`Double`	`getObjectiveLensNA(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveLotNumber(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveManufacturer(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveModel(int instrumentIndex, int objectiveIndex)`
`Double`	`getObjectiveNominalMagnification(int instrumentIndex, int objectiveIndex)`
`String`	`getObjectiveSerialNumber(int instrumentIndex, int objectiveIndex)`
`Double`	`getObjectiveSettingsCorrectionCollar(int imageIndex)`
`String`	`getObjectiveSettingsID(int imageIndex)`
`Medium`	`getObjectiveSettingsMedium(int imageIndex)`
`Double`	`getObjectiveSettingsRefractiveIndex(int imageIndex)`
`Length`	`getObjectiveWorkingDistance(int instrumentIndex, int objectiveIndex)`
`Boolean`	`getPixelsBigEndian(int imageIndex)`
`Boolean`	`getPixelsBinDataBigEndian(int imageIndex, int binDataIndex)`
`int`	`getPixelsBinDataCount(int imageIndex)`
`DimensionOrder`	`getPixelsDimensionOrder(int imageIndex)`
`String`	`getPixelsID(int imageIndex)`
`Boolean`	`getPixelsInterleaved(int imageIndex)`
`Length`	`getPixelsPhysicalSizeX(int imageIndex)`
`Length`	`getPixelsPhysicalSizeY(int imageIndex)`
`Length`	`getPixelsPhysicalSizeZ(int imageIndex)`
`PositiveInteger`	`getPixelsSignificantBits(int imageIndex)`
`PositiveInteger`	`getPixelsSizeC(int imageIndex)`
`PositiveInteger`	`getPixelsSizeT(int imageIndex)`
`PositiveInteger`	`getPixelsSizeX(int imageIndex)`
`PositiveInteger`	`getPixelsSizeY(int imageIndex)`
`PositiveInteger`	`getPixelsSizeZ(int imageIndex)`
`Time`	`getPixelsTimeIncrement(int imageIndex)`
`PixelType`	`getPixelsType(int imageIndex)`
`String`	`getPlaneAnnotationRef(int imageIndex, int planeIndex, int annotationRefIndex)`
`int`	`getPlaneAnnotationRefCount(int imageIndex, int planeIndex)`
`int`	`getPlaneCount(int imageIndex)`
`Time`	`getPlaneDeltaT(int imageIndex, int planeIndex)`
`Time`	`getPlaneExposureTime(int imageIndex, int planeIndex)`
`String`	`getPlaneHashSHA1(int imageIndex, int planeIndex)`
`Length`	`getPlanePositionX(int imageIndex, int planeIndex)`
`Length`	`getPlanePositionY(int imageIndex, int planeIndex)`
`Length`	`getPlanePositionZ(int imageIndex, int planeIndex)`
`NonNegativeInteger`	`getPlaneTheC(int imageIndex, int planeIndex)`
`NonNegativeInteger`	`getPlaneTheT(int imageIndex, int planeIndex)`
`NonNegativeInteger`	`getPlaneTheZ(int imageIndex, int planeIndex)`
`String`	`getPlateAcquisitionAnnotationRef(int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)`
`int`	`getPlateAcquisitionAnnotationRefCount(int plateIndex, int plateAcquisitionIndex)`
`int`	`getPlateAcquisitionCount(int plateIndex)`
`String`	`getPlateAcquisitionDescription(int plateIndex, int plateAcquisitionIndex)`
`Timestamp`	`getPlateAcquisitionEndTime(int plateIndex, int plateAcquisitionIndex)`
`String`	`getPlateAcquisitionID(int plateIndex, int plateAcquisitionIndex)`
`PositiveInteger`	`getPlateAcquisitionMaximumFieldCount(int plateIndex, int plateAcquisitionIndex)`
`String`	`getPlateAcquisitionName(int plateIndex, int plateAcquisitionIndex)`
`Timestamp`	`getPlateAcquisitionStartTime(int plateIndex, int plateAcquisitionIndex)`
`String`	`getPlateAcquisitionWellSampleRef(int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)`
`String`	`getPlateAnnotationRef(int plateIndex, int annotationRefIndex)`
`int`	`getPlateAnnotationRefCount(int plateIndex)`
`NamingConvention`	`getPlateColumnNamingConvention(int plateIndex)`
`PositiveInteger`	`getPlateColumns(int plateIndex)`
`int`	`getPlateCount()`
`String`	`getPlateDescription(int plateIndex)`
`String`	`getPlateExternalIdentifier(int plateIndex)`
`NonNegativeInteger`	`getPlateFieldIndex(int plateIndex)`
`String`	`getPlateID(int plateIndex)`
`String`	`getPlateName(int plateIndex)`
`int`	`getPlateRefCount(int screenIndex)`
`NamingConvention`	`getPlateRowNamingConvention(int plateIndex)`
`PositiveInteger`	`getPlateRows(int plateIndex)`
`String`	`getPlateStatus(int plateIndex)`
`Length`	`getPlateWellOriginX(int plateIndex)`
`Length`	`getPlateWellOriginY(int plateIndex)`
`String`	`getPointAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getPointFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getPointFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getPointFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getPointFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getPointFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getPointID(int ROIIndex, int shapeIndex)`
`LineCap`	`getPointLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getPointLocked(int ROIIndex, int shapeIndex)`
`Color`	`getPointStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getPointStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getPointStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getPointText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPointTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPointTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPointTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getPointTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getPointVisible(int ROIIndex, int shapeIndex)`
`Double`	`getPointX(int ROIIndex, int shapeIndex)`
`Double`	`getPointY(int ROIIndex, int shapeIndex)`
`String`	`getPolygonAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getPolygonFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getPolygonFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getPolygonFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getPolygonFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getPolygonFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getPolygonID(int ROIIndex, int shapeIndex)`
`LineCap`	`getPolygonLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolygonLocked(int ROIIndex, int shapeIndex)`
`String`	`getPolygonPoints(int ROIIndex, int shapeIndex)`
`Color`	`getPolygonStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getPolygonStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getPolygonStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getPolygonText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolygonTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolygonTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolygonTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getPolygonTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolygonVisible(int ROIIndex, int shapeIndex)`
`String`	`getPolylineAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getPolylineFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getPolylineFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getPolylineFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getPolylineFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getPolylineFontStyle(int ROIIndex, int shapeIndex)`
`String`	`getPolylineID(int ROIIndex, int shapeIndex)`
`LineCap`	`getPolylineLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolylineLocked(int ROIIndex, int shapeIndex)`
`Marker`	`getPolylineMarkerEnd(int ROIIndex, int shapeIndex)`
`Marker`	`getPolylineMarkerStart(int ROIIndex, int shapeIndex)`
`String`	`getPolylinePoints(int ROIIndex, int shapeIndex)`
`Color`	`getPolylineStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getPolylineStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getPolylineStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getPolylineText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolylineTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolylineTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getPolylineTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getPolylineTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getPolylineVisible(int ROIIndex, int shapeIndex)`
`String`	`getProjectAnnotationRef(int projectIndex, int annotationRefIndex)`
`int`	`getProjectAnnotationRefCount(int projectIndex)`
`int`	`getProjectCount()`
`String`	`getProjectDatasetRef(int projectIndex, int datasetRefIndex)`
`String`	`getProjectDescription(int projectIndex)`
`String`	`getProjectExperimenterGroupRef(int projectIndex)`
`String`	`getProjectExperimenterRef(int projectIndex)`
`String`	`getProjectID(int projectIndex)`
`String`	`getProjectName(int projectIndex)`
`String`	`getReagentAnnotationRef(int screenIndex, int reagentIndex, int annotationRefIndex)`
`int`	`getReagentAnnotationRefCount(int screenIndex, int reagentIndex)`
`int`	`getReagentCount(int screenIndex)`
`String`	`getReagentDescription(int screenIndex, int reagentIndex)`
`String`	`getReagentID(int screenIndex, int reagentIndex)`
`String`	`getReagentName(int screenIndex, int reagentIndex)`
`String`	`getReagentReagentIdentifier(int screenIndex, int reagentIndex)`
`String`	`getRectangleAnnotationRef(int ROIIndex, int shapeIndex, int annotationRefIndex)`
`Color`	`getRectangleFillColor(int ROIIndex, int shapeIndex)`
`FillRule`	`getRectangleFillRule(int ROIIndex, int shapeIndex)`
`FontFamily`	`getRectangleFontFamily(int ROIIndex, int shapeIndex)`
`Length`	`getRectangleFontSize(int ROIIndex, int shapeIndex)`
`FontStyle`	`getRectangleFontStyle(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleHeight(int ROIIndex, int shapeIndex)`
`String`	`getRectangleID(int ROIIndex, int shapeIndex)`
`LineCap`	`getRectangleLineCap(int ROIIndex, int shapeIndex)`
`Boolean`	`getRectangleLocked(int ROIIndex, int shapeIndex)`
`Color`	`getRectangleStrokeColor(int ROIIndex, int shapeIndex)`
`String`	`getRectangleStrokeDashArray(int ROIIndex, int shapeIndex)`
`Length`	`getRectangleStrokeWidth(int ROIIndex, int shapeIndex)`
`String`	`getRectangleText(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getRectangleTheC(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getRectangleTheT(int ROIIndex, int shapeIndex)`
`NonNegativeInteger`	`getRectangleTheZ(int ROIIndex, int shapeIndex)`
`AffineTransform`	`getRectangleTransform(int ROIIndex, int shapeIndex)`
`Boolean`	`getRectangleVisible(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleWidth(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleX(int ROIIndex, int shapeIndex)`
`Double`	`getRectangleY(int ROIIndex, int shapeIndex)`
`String`	`getRightsRightsHeld()`
`String`	`getRightsRightsHolder()`
`String`	`getROIAnnotationRef(int ROIIndex, int annotationRefIndex)`
`int`	`getROIAnnotationRefCount(int ROIIndex)`
`int`	`getROICount()`
`String`	`getROIDescription(int ROIIndex)`
`String`	`getROIID(int ROIIndex)`
`String`	`getROIName(int ROIIndex)`
`String`	`getROINamespace(int ROIIndex)`
`MetadataRoot`	`getRoot()` Unsupported with an AggregateMetadata.
`String`	`getScreenAnnotationRef(int screenIndex, int annotationRefIndex)`
`int`	`getScreenAnnotationRefCount(int screenIndex)`
`int`	`getScreenCount()`
`String`	`getScreenDescription(int screenIndex)`
`String`	`getScreenID(int screenIndex)`
`String`	`getScreenName(int screenIndex)`
`String`	`getScreenPlateRef(int screenIndex, int plateRefIndex)`
`String`	`getScreenProtocolDescription(int screenIndex)`
`String`	`getScreenProtocolIdentifier(int screenIndex)`
`String`	`getScreenReagentSetDescription(int screenIndex)`
`String`	`getScreenReagentSetIdentifier(int screenIndex)`
`String`	`getScreenType(int screenIndex)`
`int`	`getShapeAnnotationRefCount(int ROIIndex, int shapeIndex)`
`int`	`getShapeCount(int ROIIndex)`
`String`	`getShapeType(int roiIndex, int shapeIndex)`
`String`	`getStageLabelName(int imageIndex)`
`Length`	`getStageLabelX(int imageIndex)`
`Length`	`getStageLabelY(int imageIndex)`
`Length`	`getStageLabelZ(int imageIndex)`
`int`	`getTagAnnotationAnnotationCount(int tagAnnotationIndex)`
`String`	`getTagAnnotationAnnotationRef(int tagAnnotationIndex, int annotationRefIndex)`
`String`	`getTagAnnotationAnnotator(int tagAnnotationIndex)`
`int`	`getTagAnnotationCount()`
`String`	`getTagAnnotationDescription(int tagAnnotationIndex)`
`String`	`getTagAnnotationID(int tagAnnotationIndex)`
`String`	`getTagAnnotationNamespace(int tagAnnotationIndex)`
`String`	`getTagAnnotationValue(int tagAnnotationIndex)`
`int`	`getTermAnnotationAnnotationCount(int termAnnotationIndex)`
`String`	`getTermAnnotationAnnotationRef(int termAnnotationIndex, int annotationRefIndex)`
`String`	`getTermAnnotationAnnotator(int termAnnotationIndex)`
`int`	`getTermAnnotationCount()`
`String`	`getTermAnnotationDescription(int termAnnotationIndex)`
`String`	`getTermAnnotationID(int termAnnotationIndex)`
`String`	`getTermAnnotationNamespace(int termAnnotationIndex)`
`String`	`getTermAnnotationValue(int termAnnotationIndex)`
`int`	`getTiffDataCount(int imageIndex)`
`NonNegativeInteger`	`getTiffDataFirstC(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataFirstT(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataFirstZ(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataIFD(int imageIndex, int tiffDataIndex)`
`NonNegativeInteger`	`getTiffDataPlaneCount(int imageIndex, int tiffDataIndex)`
`int`	`getTimestampAnnotationAnnotationCount(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationAnnotationRef(int timestampAnnotationIndex, int annotationRefIndex)`
`String`	`getTimestampAnnotationAnnotator(int timestampAnnotationIndex)`
`int`	`getTimestampAnnotationCount()`
`String`	`getTimestampAnnotationDescription(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationID(int timestampAnnotationIndex)`
`String`	`getTimestampAnnotationNamespace(int timestampAnnotationIndex)`
`Timestamp`	`getTimestampAnnotationValue(int timestampAnnotationIndex)`
`Length`	`getTransmittanceRangeCutIn(int instrumentIndex, int filterIndex)`
`Length`	`getTransmittanceRangeCutInTolerance(int instrumentIndex, int filterIndex)`
`Length`	`getTransmittanceRangeCutOut(int instrumentIndex, int filterIndex)`
`Length`	`getTransmittanceRangeCutOutTolerance(int instrumentIndex, int filterIndex)`
`PercentFraction`	`getTransmittanceRangeTransmittance(int instrumentIndex, int filterIndex)`
`String`	`getUUID()` Gets the UUID associated with this collection of metadata.
`String`	`getUUIDFileName(int imageIndex, int tiffDataIndex)`
`String`	`getUUIDValue(int imageIndex, int tiffDataIndex)`
`String`	`getWellAnnotationRef(int plateIndex, int wellIndex, int annotationRefIndex)`
`int`	`getWellAnnotationRefCount(int plateIndex, int wellIndex)`
`Color`	`getWellColor(int plateIndex, int wellIndex)`
`NonNegativeInteger`	`getWellColumn(int plateIndex, int wellIndex)`
`int`	`getWellCount(int plateIndex)`
`String`	`getWellExternalDescription(int plateIndex, int wellIndex)`
`String`	`getWellExternalIdentifier(int plateIndex, int wellIndex)`
`String`	`getWellID(int plateIndex, int wellIndex)`
`String`	`getWellReagentRef(int plateIndex, int wellIndex)`
`NonNegativeInteger`	`getWellRow(int plateIndex, int wellIndex)`
`int`	`getWellSampleCount(int plateIndex, int wellIndex)`
`String`	`getWellSampleID(int plateIndex, int wellIndex, int wellSampleIndex)`
`String`	`getWellSampleImageRef(int plateIndex, int wellIndex, int wellSampleIndex)`
`NonNegativeInteger`	`getWellSampleIndex(int plateIndex, int wellIndex, int wellSampleIndex)`
`Length`	`getWellSamplePositionX(int plateIndex, int wellIndex, int wellSampleIndex)`
`Length`	`getWellSamplePositionY(int plateIndex, int wellIndex, int wellSampleIndex)`
`int`	`getWellSampleRefCount(int plateIndex, int plateAcquisitionIndex)`
`Timestamp`	`getWellSampleTimepoint(int plateIndex, int wellIndex, int wellSampleIndex)`
`String`	`getWellType(int plateIndex, int wellIndex)`
`int`	`getXMLAnnotationAnnotationCount(int xmlAnnotationIndex)`
`String`	`getXMLAnnotationAnnotationRef(int XMLAnnotationIndex, int annotationRefIndex)`
`String`	`getXMLAnnotationAnnotator(int XMLAnnotationIndex)`
`int`	`getXMLAnnotationCount()`
`String`	`getXMLAnnotationDescription(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationID(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationNamespace(int XMLAnnotationIndex)`
`String`	`getXMLAnnotationValue(int XMLAnnotationIndex)`
`void`	`setArcAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`void`	`setArcID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcPower(Power power, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setArcType(ArcType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setBinaryFileFileName(String fileName, int fileAnnotationIndex)`
`void`	`setBinaryFileMIMEType(String mimeType, int fileAnnotationIndex)`
`void`	`setBinaryFileSize(NonNegativeLong size, int fileAnnotationIndex)`
`void`	`setBinaryOnlyMetadataFile(String metadataFile)`
`void`	`setBinaryOnlyUUID(String uuid)`
`void`	`setBooleanAnnotationAnnotationRef(String annotation, int booleanAnnotationIndex, int annotationRefIndex)`
`void`	`setBooleanAnnotationAnnotator(String annotator, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationDescription(String description, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationID(String id, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationNamespace(String namespace, int booleanAnnotationIndex)`
`void`	`setBooleanAnnotationValue(Boolean value, int booleanAnnotationIndex)`
`void`	`setChannelAcquisitionMode(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)`
`void`	`setChannelAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)`
`void`	`setChannelColor(Color color, int imageIndex, int channelIndex)`
`void`	`setChannelContrastMethod(ContrastMethod contrastMethod, int imageIndex, int channelIndex)`
`void`	`setChannelEmissionWavelength(Length emissionWavelength, int imageIndex, int channelIndex)`
`void`	`setChannelExcitationWavelength(Length excitationWavelength, int imageIndex, int channelIndex)`
`void`	`setChannelFilterSetRef(String filterSet, int imageIndex, int channelIndex)`
`void`	`setChannelFluor(String fluor, int imageIndex, int channelIndex)`
`void`	`setChannelID(String id, int imageIndex, int channelIndex)`
`void`	`setChannelIlluminationType(IlluminationType illuminationType, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsAttenuation(PercentFraction attenuation, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsID(String id, int imageIndex, int channelIndex)`
`void`	`setChannelLightSourceSettingsWavelength(Length wavelength, int imageIndex, int channelIndex)`
`void`	`setChannelName(String name, int imageIndex, int channelIndex)`
`void`	`setChannelNDFilter(Double ndFilter, int imageIndex, int channelIndex)`
`void`	`setChannelPinholeSize(Length pinholeSize, int imageIndex, int channelIndex)`
`void`	`setChannelPockelCellSetting(Integer pockelCellSetting, int imageIndex, int channelIndex)`
`void`	`setChannelSamplesPerPixel(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)`
`void`	`setCommentAnnotationAnnotationRef(String annotation, int commentAnnotationIndex, int annotationRefIndex)`
`void`	`setCommentAnnotationAnnotator(String annotator, int commentAnnotationIndex)`
`void`	`setCommentAnnotationDescription(String description, int commentAnnotationIndex)`
`void`	`setCommentAnnotationID(String id, int commentAnnotationIndex)`
`void`	`setCommentAnnotationNamespace(String namespace, int commentAnnotationIndex)`
`void`	`setCommentAnnotationValue(String value, int commentAnnotationIndex)`
`void`	`setDatasetAnnotationRef(String annotation, int datasetIndex, int annotationRefIndex)`
`void`	`setDatasetDescription(String description, int datasetIndex)`
`void`	`setDatasetExperimenterGroupRef(String experimenterGroup, int datasetIndex)`
`void`	`setDatasetExperimenterRef(String experimenter, int datasetIndex)`
`void`	`setDatasetID(String id, int datasetIndex)`
`void`	`setDatasetImageRef(String image, int datasetIndex, int imageRefIndex)`
`void`	`setDatasetName(String name, int datasetIndex)`
`void`	`setDetectorAmplificationGain(Double amplificationGain, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorAnnotationRef(String annotation, int instrumentIndex, int detectorIndex, int annotationRefIndex)`
`void`	`setDetectorGain(Double gain, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorID(String id, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorLotNumber(String lotNumber, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorManufacturer(String manufacturer, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorModel(String model, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorOffset(Double offset, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorSerialNumber(String serialNumber, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorSettingsBinning(Binning binning, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsGain(Double gain, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsID(String id, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsIntegration(PositiveInteger integration, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsOffset(Double offset, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsReadOutRate(Frequency readOutRate, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsVoltage(ElectricPotential voltage, int imageIndex, int channelIndex)`
`void`	`setDetectorSettingsZoom(Double zoom, int imageIndex, int channelIndex)`
`void`	`setDetectorType(DetectorType type, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorVoltage(ElectricPotential voltage, int instrumentIndex, int detectorIndex)`
`void`	`setDetectorZoom(Double zoom, int instrumentIndex, int detectorIndex)`
`void`	`setDichroicAnnotationRef(String annotation, int instrumentIndex, int dichroicIndex, int annotationRefIndex)`
`void`	`setDichroicID(String id, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicLotNumber(String lotNumber, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicManufacturer(String manufacturer, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicModel(String model, int instrumentIndex, int dichroicIndex)`
`void`	`setDichroicSerialNumber(String serialNumber, int instrumentIndex, int dichroicIndex)`
`void`	`setDoubleAnnotationAnnotationRef(String annotation, int doubleAnnotationIndex, int annotationRefIndex)`
`void`	`setDoubleAnnotationAnnotator(String annotator, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationDescription(String description, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationID(String id, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationNamespace(String namespace, int doubleAnnotationIndex)`
`void`	`setDoubleAnnotationValue(Double value, int doubleAnnotationIndex)`
`void`	`setEllipseAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setEllipseFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setEllipseFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setEllipseID(String id, int ROIIndex, int shapeIndex)`
`void`	`setEllipseLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setEllipseLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setEllipseRadiusX(Double radiusX, int ROIIndex, int shapeIndex)`
`void`	`setEllipseRadiusY(Double radiusY, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setEllipseStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setEllipseText(String text, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setEllipseTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setEllipseVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setEllipseX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setEllipseY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setExperimentDescription(String description, int experimentIndex)`
`void`	`setExperimenterAnnotationRef(String annotation, int experimenterIndex, int annotationRefIndex)`
`void`	`setExperimenterEmail(String email, int experimenterIndex)`
`void`	`setExperimenterFirstName(String firstName, int experimenterIndex)`
`void`	`setExperimenterGroupAnnotationRef(String annotation, int experimenterGroupIndex, int annotationRefIndex)`
`void`	`setExperimenterGroupDescription(String description, int experimenterGroupIndex)`
`void`	`setExperimenterGroupExperimenterRef(String experimenter, int experimenterGroupIndex, int experimenterRefIndex)`
`void`	`setExperimenterGroupID(String id, int experimenterGroupIndex)`
`void`	`setExperimenterGroupLeader(String leader, int experimenterGroupIndex, int leaderIndex)`
`void`	`setExperimenterGroupName(String name, int experimenterGroupIndex)`
`void`	`setExperimenterID(String id, int experimenterIndex)`
`void`	`setExperimenterInstitution(String institution, int experimenterIndex)`
`void`	`setExperimenterLastName(String lastName, int experimenterIndex)`
`void`	`setExperimenterMiddleName(String middleName, int experimenterIndex)`
`void`	`setExperimenterUserName(String userName, int experimenterIndex)`
`void`	`setExperimentExperimenterRef(String experimenter, int experimentIndex)`
`void`	`setExperimentID(String id, int experimentIndex)`
`void`	`setExperimentType(ExperimentType type, int experimentIndex)`
`void`	`setFilamentAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`void`	`setFilamentID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentPower(Power power, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setFilamentType(FilamentType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setFileAnnotationAnnotationRef(String annotation, int fileAnnotationIndex, int annotationRefIndex)`
`void`	`setFileAnnotationAnnotator(String annotator, int fileAnnotationIndex)`
`void`	`setFileAnnotationDescription(String description, int fileAnnotationIndex)`
`void`	`setFileAnnotationID(String id, int fileAnnotationIndex)`
`void`	`setFileAnnotationNamespace(String namespace, int fileAnnotationIndex)`
`void`	`setFilterAnnotationRef(String annotation, int instrumentIndex, int filterIndex, int annotationRefIndex)`
`void`	`setFilterFilterWheel(String filterWheel, int instrumentIndex, int filterIndex)`
`void`	`setFilterID(String id, int instrumentIndex, int filterIndex)`
`void`	`setFilterLotNumber(String lotNumber, int instrumentIndex, int filterIndex)`
`void`	`setFilterManufacturer(String manufacturer, int instrumentIndex, int filterIndex)`
`void`	`setFilterModel(String model, int instrumentIndex, int filterIndex)`
`void`	`setFilterSerialNumber(String serialNumber, int instrumentIndex, int filterIndex)`
`void`	`setFilterSetDichroicRef(String dichroic, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetEmissionFilterRef(String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)`
`void`	`setFilterSetExcitationFilterRef(String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)`
`void`	`setFilterSetID(String id, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetLotNumber(String lotNumber, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetManufacturer(String manufacturer, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetModel(String model, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterSetSerialNumber(String serialNumber, int instrumentIndex, int filterSetIndex)`
`void`	`setFilterType(FilterType type, int instrumentIndex, int filterIndex)`
`void`	`setGenericExcitationSourceAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`void`	`setGenericExcitationSourceID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setGenericExcitationSourceLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setGenericExcitationSourceManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setGenericExcitationSourceMap(List<MapPair> map, int instrumentIndex, int lightSourceIndex)` Sets the Map value associated with this generic light source
`void`	`setGenericExcitationSourceModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setGenericExcitationSourcePower(Power power, int instrumentIndex, int lightSourceIndex)`
`void`	`setGenericExcitationSourceSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex)`
`void`	`setImageAnnotationRef(String annotation, int imageIndex, int annotationRefIndex)`
`void`	`setImageDescription(String description, int imageIndex)`
`void`	`setImageExperimenterGroupRef(String experimenterGroup, int imageIndex)`
`void`	`setImageExperimenterRef(String experimenter, int imageIndex)`
`void`	`setImageExperimentRef(String experiment, int imageIndex)`
`void`	`setImageID(String id, int imageIndex)`
`void`	`setImageInstrumentRef(String instrument, int imageIndex)`
`void`	`setImageMicrobeamManipulationRef(String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)`
`void`	`setImageName(String name, int imageIndex)`
`void`	`setImageROIRef(String roi, int imageIndex, int ROIRefIndex)`
`void`	`setImagingEnvironmentAirPressure(Pressure airPressure, int imageIndex)`
`void`	`setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex)`
`void`	`setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex)`
`void`	`setImagingEnvironmentMap(List<MapPair> map, int imageIndex)` Sets the Map value associated with this imaging environment
`void`	`setImagingEnvironmentTemperature(Temperature temperature, int imageIndex)`
`void`	`setInstrumentAnnotationRef(String annotation, int instrumentIndex, int annotationRefIndex)`
`void`	`setInstrumentID(String id, int instrumentIndex)`
`void`	`setLabelAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setLabelFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setLabelFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setLabelFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setLabelID(String id, int ROIIndex, int shapeIndex)`
`void`	`setLabelLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setLabelLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setLabelStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setLabelText(String text, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setLabelTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setLabelTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setLabelVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setLabelX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setLabelY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setLaserAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`void`	`setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserLaserMedium(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPockelCell(Boolean pockelCell, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPower(Power power, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPulse(Pulse pulse, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserPump(String pump, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserRepetitionRate(Frequency repetitionRate, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserTuneable(Boolean tuneable, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserType(LaserType type, int instrumentIndex, int lightSourceIndex)`
`void`	`setLaserWavelength(Length wavelength, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex)`
`void`	`setLightEmittingDiodeID(String id, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeLotNumber(String lotNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeManufacturer(String manufacturer, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeModel(String model, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodePower(Power power, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightEmittingDiodeSerialNumber(String serialNumber, int instrumentIndex, int lightSourceIndex)`
`void`	`setLightPathAnnotationRef(String annotation, int imageIndex, int channelIndex, int annotationRefIndex)`
`void`	`setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex)`
`void`	`setLightPathEmissionFilterRef(String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)`
`void`	`setLightPathExcitationFilterRef(String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)`
`void`	`setLineAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setLineFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setLineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setLineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setLineFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setLineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setLineID(String id, int ROIIndex, int shapeIndex)`
`void`	`setLineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setLineLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setLineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)`
`void`	`setLineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setLineStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setLineText(String text, int ROIIndex, int shapeIndex)`
`void`	`setLineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setLineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setLineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setLineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setLineVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setLineX1(Double x1, int ROIIndex, int shapeIndex)`
`void`	`setLineX2(Double x2, int ROIIndex, int shapeIndex)`
`void`	`setLineY1(Double y1, int ROIIndex, int shapeIndex)`
`void`	`setLineY2(Double y2, int ROIIndex, int shapeIndex)`
`void`	`setListAnnotationAnnotationRef(String annotation, int listAnnotationIndex, int annotationRefIndex)`
`void`	`setListAnnotationAnnotator(String annotator, int listAnnotationIndex)`
`void`	`setListAnnotationDescription(String description, int listAnnotationIndex)`
`void`	`setListAnnotationID(String id, int listAnnotationIndex)`
`void`	`setListAnnotationNamespace(String namespace, int listAnnotationIndex)`
`void`	`setLongAnnotationAnnotationRef(String annotation, int longAnnotationIndex, int annotationRefIndex)`
`void`	`setLongAnnotationAnnotator(String annotator, int longAnnotationIndex)`
`void`	`setLongAnnotationDescription(String description, int longAnnotationIndex)`
`void`	`setLongAnnotationID(String id, int longAnnotationIndex)`
`void`	`setLongAnnotationNamespace(String namespace, int longAnnotationIndex)`
`void`	`setLongAnnotationValue(Long value, int longAnnotationIndex)`
`void`	`setMapAnnotationAnnotationRef(String annotation, int mapAnnotationIndex, int annotationRefIndex)`
`void`	`setMapAnnotationAnnotator(String annotator, int mapAnnotationIndex)`
`void`	`setMapAnnotationDescription(String description, int mapAnnotationIndex)`
`void`	`setMapAnnotationID(String id, int mapAnnotationIndex)`
`void`	`setMapAnnotationNamespace(String namespace, int mapAnnotationIndex)`
`void`	`setMapAnnotationValue(List<MapPair> value, int mapAnnotationIndex)` Sets the Map value associated with this annotation
`void`	`setMaskAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setMaskBinData(byte[] binData, int ROIIndex, int shapeIndex)`
`void`	`setMaskFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setMaskFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setMaskFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setMaskHeight(Double height, int ROIIndex, int shapeIndex)`
`void`	`setMaskID(String id, int ROIIndex, int shapeIndex)`
`void`	`setMaskLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setMaskLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setMaskStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setMaskText(String text, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setMaskTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setMaskTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setMaskVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setMaskWidth(Double width, int ROIIndex, int shapeIndex)`
`void`	`setMaskX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setMaskY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setMicrobeamManipulationDescription(String description, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationExperimenterRef(String experimenter, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationID(String id, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsID(String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)`
`void`	`setMicrobeamManipulationROIRef(String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)`
`void`	`setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)`
`void`	`setMicroscopeLotNumber(String lotNumber, int instrumentIndex)`
`void`	`setMicroscopeManufacturer(String manufacturer, int instrumentIndex)`
`void`	`setMicroscopeModel(String model, int instrumentIndex)`
`void`	`setMicroscopeSerialNumber(String serialNumber, int instrumentIndex)`
`void`	`setMicroscopeType(MicroscopeType type, int instrumentIndex)`
`void`	`setObjectiveAnnotationRef(String annotation, int instrumentIndex, int objectiveIndex, int annotationRefIndex)`
`void`	`setObjectiveCalibratedMagnification(Double calibratedMagnification, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveCorrection(Correction correction, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveID(String id, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveImmersion(Immersion immersion, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveIris(Boolean iris, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveLensNA(Double lensNA, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveLotNumber(String lotNumber, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveManufacturer(String manufacturer, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveModel(String model, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveNominalMagnification(Double nominalMagnification, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveSerialNumber(String serialNumber, int instrumentIndex, int objectiveIndex)`
`void`	`setObjectiveSettingsCorrectionCollar(Double correctionCollar, int imageIndex)`
`void`	`setObjectiveSettingsID(String id, int imageIndex)`
`void`	`setObjectiveSettingsMedium(Medium medium, int imageIndex)`
`void`	`setObjectiveSettingsRefractiveIndex(Double refractiveIndex, int imageIndex)`
`void`	`setObjectiveWorkingDistance(Length workingDistance, int instrumentIndex, int objectiveIndex)`
`void`	`setPixelsBigEndian(Boolean bigEndian, int imageIndex)`
`void`	`setPixelsBinDataBigEndian(Boolean bigEndian, int imageIndex, int binDataIndex)`
`void`	`setPixelsDimensionOrder(DimensionOrder dimensionOrder, int imageIndex)`
`void`	`setPixelsID(String id, int imageIndex)`
`void`	`setPixelsInterleaved(Boolean interleaved, int imageIndex)`
`void`	`setPixelsPhysicalSizeX(Length physicalSizeX, int imageIndex)`
`void`	`setPixelsPhysicalSizeY(Length physicalSizeY, int imageIndex)`
`void`	`setPixelsPhysicalSizeZ(Length physicalSizeZ, int imageIndex)`
`void`	`setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex)`
`void`	`setPixelsSizeC(PositiveInteger sizeC, int imageIndex)`
`void`	`setPixelsSizeT(PositiveInteger sizeT, int imageIndex)`
`void`	`setPixelsSizeX(PositiveInteger sizeX, int imageIndex)`
`void`	`setPixelsSizeY(PositiveInteger sizeY, int imageIndex)`
`void`	`setPixelsSizeZ(PositiveInteger sizeZ, int imageIndex)`
`void`	`setPixelsTimeIncrement(Time timeIncrement, int imageIndex)`
`void`	`setPixelsType(PixelType type, int imageIndex)`
`void`	`setPlaneAnnotationRef(String annotation, int imageIndex, int planeIndex, int annotationRefIndex)`
`void`	`setPlaneDeltaT(Time deltaT, int imageIndex, int planeIndex)`
`void`	`setPlaneExposureTime(Time exposureTime, int imageIndex, int planeIndex)`
`void`	`setPlaneHashSHA1(String hashSHA1, int imageIndex, int planeIndex)`
`void`	`setPlanePositionX(Length positionX, int imageIndex, int planeIndex)`
`void`	`setPlanePositionY(Length positionY, int imageIndex, int planeIndex)`
`void`	`setPlanePositionZ(Length positionZ, int imageIndex, int planeIndex)`
`void`	`setPlaneTheC(NonNegativeInteger theC, int imageIndex, int planeIndex)`
`void`	`setPlaneTheT(NonNegativeInteger theT, int imageIndex, int planeIndex)`
`void`	`setPlaneTheZ(NonNegativeInteger theZ, int imageIndex, int planeIndex)`
`void`	`setPlateAcquisitionAnnotationRef(String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)`
`void`	`setPlateAcquisitionDescription(String description, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionEndTime(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionID(String id, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionName(String name, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionStartTime(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)`
`void`	`setPlateAcquisitionWellSampleRef(String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)`
`void`	`setPlateAnnotationRef(String annotation, int plateIndex, int annotationRefIndex)`
`void`	`setPlateColumnNamingConvention(NamingConvention columnNamingConvention, int plateIndex)`
`void`	`setPlateColumns(PositiveInteger columns, int plateIndex)`
`void`	`setPlateDescription(String description, int plateIndex)`
`void`	`setPlateExternalIdentifier(String externalIdentifier, int plateIndex)`
`void`	`setPlateFieldIndex(NonNegativeInteger fieldIndex, int plateIndex)`
`void`	`setPlateID(String id, int plateIndex)`
`void`	`setPlateName(String name, int plateIndex)`
`void`	`setPlateRowNamingConvention(NamingConvention rowNamingConvention, int plateIndex)`
`void`	`setPlateRows(PositiveInteger rows, int plateIndex)`
`void`	`setPlateStatus(String status, int plateIndex)`
`void`	`setPlateWellOriginX(Length wellOriginX, int plateIndex)`
`void`	`setPlateWellOriginY(Length wellOriginY, int plateIndex)`
`void`	`setPointAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setPointFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPointFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPointFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPointFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPointFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPointID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPointLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPointLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPointStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPointText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPointTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPointTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPointTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPointTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPointVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setPointX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setPointY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setPolygonAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setPolygonFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPolygonFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPolygonID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPolygonLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPolygonLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPolygonPoints(String points, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPolygonStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPolygonText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPolygonTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPolygonVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setPolylineAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setPolylineFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setPolylineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setPolylineID(String id, int ROIIndex, int shapeIndex)`
`void`	`setPolylineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setPolylineLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setPolylineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)`
`void`	`setPolylineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)`
`void`	`setPolylinePoints(String points, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setPolylineStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setPolylineText(String text, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setPolylineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setPolylineVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setProjectAnnotationRef(String annotation, int projectIndex, int annotationRefIndex)`
`void`	`setProjectDatasetRef(String dataset, int projectIndex, int datasetRefIndex)`
`void`	`setProjectDescription(String description, int projectIndex)`
`void`	`setProjectExperimenterGroupRef(String experimenterGroup, int projectIndex)`
`void`	`setProjectExperimenterRef(String experimenter, int projectIndex)`
`void`	`setProjectID(String id, int projectIndex)`
`void`	`setProjectName(String name, int projectIndex)`
`void`	`setReagentAnnotationRef(String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)`
`void`	`setReagentDescription(String description, int screenIndex, int reagentIndex)`
`void`	`setReagentID(String id, int screenIndex, int reagentIndex)`
`void`	`setReagentName(String name, int screenIndex, int reagentIndex)`
`void`	`setReagentReagentIdentifier(String reagentIdentifier, int screenIndex, int reagentIndex)`
`void`	`setRectangleAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex)`
`void`	`setRectangleFillColor(Color fillColor, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontSize(Length fontSize, int ROIIndex, int shapeIndex)`
`void`	`setRectangleFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)`
`void`	`setRectangleHeight(Double height, int ROIIndex, int shapeIndex)`
`void`	`setRectangleID(String id, int ROIIndex, int shapeIndex)`
`void`	`setRectangleLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)`
`void`	`setRectangleLocked(Boolean locked, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeDashArray(String strokeDashArray, int ROIIndex, int shapeIndex)`
`void`	`setRectangleStrokeWidth(Length strokeWidth, int ROIIndex, int shapeIndex)`
`void`	`setRectangleText(String text, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)`
`void`	`setRectangleTransform(AffineTransform transform, int ROIIndex, int shapeIndex)`
`void`	`setRectangleVisible(Boolean visible, int ROIIndex, int shapeIndex)`
`void`	`setRectangleWidth(Double width, int ROIIndex, int shapeIndex)`
`void`	`setRectangleX(Double x, int ROIIndex, int shapeIndex)`
`void`	`setRectangleY(Double y, int ROIIndex, int shapeIndex)`
`void`	`setRightsRightsHeld(String rightsHeld)`
`void`	`setRightsRightsHolder(String rightsHolder)`
`void`	`setROIAnnotationRef(String annotation, int ROIIndex, int annotationRefIndex)`
`void`	`setROIDescription(String description, int ROIIndex)`
`void`	`setROIID(String id, int ROIIndex)`
`void`	`setROIName(String name, int ROIIndex)`
`void`	`setROINamespace(String namespace, int ROIIndex)`
`void`	`setRoot(MetadataRoot root)` Unsupported with an AggregateMetadata.
`void`	`setScreenAnnotationRef(String annotation, int screenIndex, int annotationRefIndex)`
`void`	`setScreenDescription(String description, int screenIndex)`
`void`	`setScreenID(String id, int screenIndex)`
`void`	`setScreenName(String name, int screenIndex)`
`void`	`setScreenPlateRef(String plate, int screenIndex, int plateRefIndex)`
`void`	`setScreenProtocolDescription(String protocolDescription, int screenIndex)`
`void`	`setScreenProtocolIdentifier(String protocolIdentifier, int screenIndex)`
`void`	`setScreenReagentSetDescription(String reagentSetDescription, int screenIndex)`
`void`	`setScreenReagentSetIdentifier(String reagentSetIdentifier, int screenIndex)`
`void`	`setScreenType(String type, int screenIndex)`
`void`	`setStageLabelName(String name, int imageIndex)`
`void`	`setStageLabelX(Length x, int imageIndex)`
`void`	`setStageLabelY(Length y, int imageIndex)`
`void`	`setStageLabelZ(Length z, int imageIndex)`
`void`	`setTagAnnotationAnnotationRef(String annotation, int tagAnnotationIndex, int annotationRefIndex)`
`void`	`setTagAnnotationAnnotator(String annotator, int tagAnnotationIndex)`
`void`	`setTagAnnotationDescription(String description, int tagAnnotationIndex)`
`void`	`setTagAnnotationID(String id, int tagAnnotationIndex)`
`void`	`setTagAnnotationNamespace(String namespace, int tagAnnotationIndex)`
`void`	`setTagAnnotationValue(String value, int tagAnnotationIndex)`
`void`	`setTermAnnotationAnnotationRef(String annotation, int termAnnotationIndex, int annotationRefIndex)`
`void`	`setTermAnnotationAnnotator(String annotator, int termAnnotationIndex)`
`void`	`setTermAnnotationDescription(String description, int termAnnotationIndex)`
`void`	`setTermAnnotationID(String id, int termAnnotationIndex)`
`void`	`setTermAnnotationNamespace(String namespace, int termAnnotationIndex)`
`void`	`setTermAnnotationValue(String value, int termAnnotationIndex)`
`void`	`setTiffDataFirstC(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataFirstT(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataFirstZ(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataIFD(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)`
`void`	`setTiffDataPlaneCount(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)`
`void`	`setTimestampAnnotationAnnotationRef(String annotation, int timestampAnnotationIndex, int annotationRefIndex)`
`void`	`setTimestampAnnotationAnnotator(String annotator, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationDescription(String description, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationID(String id, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationNamespace(String namespace, int timestampAnnotationIndex)`
`void`	`setTimestampAnnotationValue(Timestamp value, int timestampAnnotationIndex)`
`void`	`setTransmittanceRangeCutIn(Length cutIn, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutInTolerance(Length cutInTolerance, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutOut(Length cutOut, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeCutOutTolerance(Length cutOutTolerance, int instrumentIndex, int filterIndex)`
`void`	`setTransmittanceRangeTransmittance(PercentFraction transmittance, int instrumentIndex, int filterIndex)`
`void`	`setUUID(String uuid)` Sets the UUID associated with this collection of metadata.
`void`	`setUUIDFileName(String fileName, int imageIndex, int tiffDataIndex)`
`void`	`setUUIDValue(String value, int imageIndex, int tiffDataIndex)`
`void`	`setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex)`
`void`	`setWellColor(Color color, int plateIndex, int wellIndex)`
`void`	`setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex)`
`void`	`setWellExternalDescription(String externalDescription, int plateIndex, int wellIndex)`
`void`	`setWellExternalIdentifier(String externalIdentifier, int plateIndex, int wellIndex)`
`void`	`setWellID(String id, int plateIndex, int wellIndex)`
`void`	`setWellReagentRef(String reagent, int plateIndex, int wellIndex)`
`void`	`setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex)`
`void`	`setWellSampleID(String id, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleImageRef(String image, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleIndex(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSamplePositionX(Length positionX, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSamplePositionY(Length positionY, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellSampleTimepoint(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)`
`void`	`setWellType(String type, int plateIndex, int wellIndex)`
`void`	`setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex)`
`void`	`setXMLAnnotationAnnotator(String annotator, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationDescription(String description, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationID(String id, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationNamespace(String namespace, int XMLAnnotationIndex)`
`void`	`setXMLAnnotationValue(String value, int XMLAnnotationIndex)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- delegates
```
private List<BaseMetadata> delegates
```
  The active metadata store delegates.

Constructor Detail
- AggregateMetadata
```
public AggregateMetadata(List<BaseMetadata> delegates)
```
  Creates a new instance.
  
  Parameters:
  delegates - of type MetadataRetrieve and/or MetadataStore.

Method Detail

createRoot
```
public void createRoot()
```
Specified by:

createRoot in interface MetadataStore

getRoot
```
public MetadataRoot getRoot()
```
Unsupported with an AggregateMetadata.

Specified by:

getRoot in interface MetadataStore

Throws:

RuntimeException - Always.

setRoot
```
public void setRoot(MetadataRoot root)
```
Unsupported with an AggregateMetadata.

Specified by:

setRoot in interface MetadataStore

Throws:

RuntimeException - Always.

getPixelsBinDataCount
```
public int getPixelsBinDataCount(int imageIndex)
```
Specified by:

getPixelsBinDataCount in interface MetadataRetrieve

getBooleanAnnotationAnnotationCount
```
public int getBooleanAnnotationAnnotationCount(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationAnnotationCount in interface MetadataRetrieve

getCommentAnnotationAnnotationCount
```
public int getCommentAnnotationAnnotationCount(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationAnnotationCount in interface MetadataRetrieve

getDoubleAnnotationAnnotationCount
```
public int getDoubleAnnotationAnnotationCount(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationAnnotationCount in interface MetadataRetrieve

getFileAnnotationAnnotationCount
```
public int getFileAnnotationAnnotationCount(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationAnnotationCount in interface MetadataRetrieve

getListAnnotationAnnotationCount
```
public int getListAnnotationAnnotationCount(int listAnnotationIndex)
```
Specified by:

getListAnnotationAnnotationCount in interface MetadataRetrieve

getLongAnnotationAnnotationCount
```
public int getLongAnnotationAnnotationCount(int longAnnotationIndex)
```
Specified by:

getLongAnnotationAnnotationCount in interface MetadataRetrieve

getMapAnnotationAnnotationCount
```
public int getMapAnnotationAnnotationCount(int mapAnnotationIndex)
```
Specified by:

getMapAnnotationAnnotationCount in interface MetadataRetrieve

getTagAnnotationAnnotationCount
```
public int getTagAnnotationAnnotationCount(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationAnnotationCount in interface MetadataRetrieve

getTermAnnotationAnnotationCount
```
public int getTermAnnotationAnnotationCount(int termAnnotationIndex)
```
Specified by:

getTermAnnotationAnnotationCount in interface MetadataRetrieve

getTimestampAnnotationAnnotationCount
```
public int getTimestampAnnotationAnnotationCount(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationAnnotationCount in interface MetadataRetrieve

getXMLAnnotationAnnotationCount
```
public int getXMLAnnotationAnnotationCount(int xmlAnnotationIndex)
```
Specified by:

getXMLAnnotationAnnotationCount in interface MetadataRetrieve

getLightSourceType

public String getLightSourceType(int instrumentIndex,
                        int lightSourceIndex)

Specified by:: getLightSourceType in interface MetadataRetrieve

getShapeType

public String getShapeType(int roiIndex,
                  int shapeIndex)

Specified by:: getShapeType in interface MetadataRetrieve

getLightSourceAnnotationRefCount

public int getLightSourceAnnotationRefCount(int instrumentIndex,
                                   int lightSourceIndex)

Specified by:: getLightSourceAnnotationRefCount in interface MetadataRetrieve

getInstrumentAnnotationRefCount
```
public int getInstrumentAnnotationRefCount(int instrumentIndex)
```
Specified by:

getInstrumentAnnotationRefCount in interface MetadataRetrieve

getObjectiveAnnotationRefCount

public int getObjectiveAnnotationRefCount(int instrumentIndex,
                                 int objectiveIndex)

Specified by:: getObjectiveAnnotationRefCount in interface MetadataRetrieve

getDetectorAnnotationRefCount

public int getDetectorAnnotationRefCount(int instrumentIndex,
                                int detectorIndex)

Specified by:: getDetectorAnnotationRefCount in interface MetadataRetrieve

getChannelAnnotationRefCount

public int getChannelAnnotationRefCount(int imageIndex,
                               int channelIndex)

Specified by:: getChannelAnnotationRefCount in interface MetadataRetrieve

getPlateAnnotationRefCount
```
public int getPlateAnnotationRefCount(int plateIndex)
```
Specified by:

getPlateAnnotationRefCount in interface MetadataRetrieve

getExperimenterGroupAnnotationRefCount
```
public int getExperimenterGroupAnnotationRefCount(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupAnnotationRefCount in interface MetadataRetrieve

getScreenAnnotationRefCount
```
public int getScreenAnnotationRefCount(int screenIndex)
```
Specified by:

getScreenAnnotationRefCount in interface MetadataRetrieve

getReagentAnnotationRefCount

public int getReagentAnnotationRefCount(int screenIndex,
                               int reagentIndex)

Specified by:: getReagentAnnotationRefCount in interface MetadataRetrieve

getPlaneAnnotationRefCount

public int getPlaneAnnotationRefCount(int imageIndex,
                             int planeIndex)

Specified by:: getPlaneAnnotationRefCount in interface MetadataRetrieve

getExperimenterAnnotationRefCount
```
public int getExperimenterAnnotationRefCount(int experimenterIndex)
```
Specified by:

getExperimenterAnnotationRefCount in interface MetadataRetrieve

getDichroicAnnotationRefCount

public int getDichroicAnnotationRefCount(int instrumentIndex,
                                int dichroicIndex)

Specified by:: getDichroicAnnotationRefCount in interface MetadataRetrieve

getWellAnnotationRefCount

public int getWellAnnotationRefCount(int plateIndex,
                            int wellIndex)

Specified by:: getWellAnnotationRefCount in interface MetadataRetrieve

getFilterAnnotationRefCount

public int getFilterAnnotationRefCount(int instrumentIndex,
                              int filterIndex)

Specified by:: getFilterAnnotationRefCount in interface MetadataRetrieve

getPlateAcquisitionAnnotationRefCount

public int getPlateAcquisitionAnnotationRefCount(int plateIndex,
                                        int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionAnnotationRefCount in interface MetadataRetrieve

getROIAnnotationRefCount
```
public int getROIAnnotationRefCount(int ROIIndex)
```
Specified by:

getROIAnnotationRefCount in interface MetadataRetrieve

getProjectAnnotationRefCount
```
public int getProjectAnnotationRefCount(int projectIndex)
```
Specified by:

getProjectAnnotationRefCount in interface MetadataRetrieve

getLightPathAnnotationRefCount

public int getLightPathAnnotationRefCount(int imageIndex,
                                 int channelIndex)

Specified by:: getLightPathAnnotationRefCount in interface MetadataRetrieve

getImageAnnotationRefCount
```
public int getImageAnnotationRefCount(int imageIndex)
```
Specified by:

getImageAnnotationRefCount in interface MetadataRetrieve

getDatasetAnnotationRefCount
```
public int getDatasetAnnotationRefCount(int datasetIndex)
```
Specified by:

getDatasetAnnotationRefCount in interface MetadataRetrieve

getShapeAnnotationRefCount

public int getShapeAnnotationRefCount(int ROIIndex,
                             int shapeIndex)

Specified by:: getShapeAnnotationRefCount in interface MetadataRetrieve

getBooleanAnnotationCount
```
public int getBooleanAnnotationCount()
```
Specified by:

getBooleanAnnotationCount in interface MetadataRetrieve

getChannelCount
```
public int getChannelCount(int imageIndex)
```
Specified by:

getChannelCount in interface MetadataRetrieve

getCommentAnnotationCount
```
public int getCommentAnnotationCount()
```
Specified by:

getCommentAnnotationCount in interface MetadataRetrieve

getDatasetCount
```
public int getDatasetCount()
```
Specified by:

getDatasetCount in interface MetadataRetrieve

getDatasetRefCount
```
public int getDatasetRefCount(int projectIndex)
```
Specified by:

getDatasetRefCount in interface MetadataRetrieve

getDetectorCount
```
public int getDetectorCount(int instrumentIndex)
```
Specified by:

getDetectorCount in interface MetadataRetrieve

getDichroicCount
```
public int getDichroicCount(int instrumentIndex)
```
Specified by:

getDichroicCount in interface MetadataRetrieve

getDoubleAnnotationCount
```
public int getDoubleAnnotationCount()
```
Specified by:

getDoubleAnnotationCount in interface MetadataRetrieve

getLightPathEmissionFilterRefCount

public int getLightPathEmissionFilterRefCount(int imageIndex,
                                     int channelIndex)

Specified by:: getLightPathEmissionFilterRefCount in interface MetadataRetrieve

getFilterSetEmissionFilterRefCount

public int getFilterSetEmissionFilterRefCount(int instrumentIndex,
                                     int filterSetIndex)

Specified by:: getFilterSetEmissionFilterRefCount in interface MetadataRetrieve

getLightPathExcitationFilterRefCount

public int getLightPathExcitationFilterRefCount(int imageIndex,
                                       int channelIndex)

Specified by:: getLightPathExcitationFilterRefCount in interface MetadataRetrieve

getFilterSetExcitationFilterRefCount

public int getFilterSetExcitationFilterRefCount(int instrumentIndex,
                                       int filterSetIndex)

Specified by:: getFilterSetExcitationFilterRefCount in interface MetadataRetrieve

getExperimentCount
```
public int getExperimentCount()
```
Specified by:

getExperimentCount in interface MetadataRetrieve

getExperimenterCount
```
public int getExperimenterCount()
```
Specified by:

getExperimenterCount in interface MetadataRetrieve

getExperimenterGroupCount
```
public int getExperimenterGroupCount()
```
Specified by:

getExperimenterGroupCount in interface MetadataRetrieve

getExperimenterGroupExperimenterRefCount
```
public int getExperimenterGroupExperimenterRefCount(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupExperimenterRefCount in interface MetadataRetrieve

getFileAnnotationCount
```
public int getFileAnnotationCount()
```
Specified by:

getFileAnnotationCount in interface MetadataRetrieve

getFilterCount
```
public int getFilterCount(int instrumentIndex)
```
Specified by:

getFilterCount in interface MetadataRetrieve

getFilterSetCount
```
public int getFilterSetCount(int instrumentIndex)
```
Specified by:

getFilterSetCount in interface MetadataRetrieve

getImageCount
```
public int getImageCount()
```
Specified by:

getImageCount in interface MetadataRetrieve

getDatasetImageRefCount
```
public int getDatasetImageRefCount(int datasetIndex)
```
Specified by:

getDatasetImageRefCount in interface MetadataRetrieve

getInstrumentCount
```
public int getInstrumentCount()
```
Specified by:

getInstrumentCount in interface MetadataRetrieve

getLeaderCount
```
public int getLeaderCount(int experimenterGroupIndex)
```
Specified by:

getLeaderCount in interface MetadataRetrieve

getLightSourceCount
```
public int getLightSourceCount(int instrumentIndex)
```
Specified by:

getLightSourceCount in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsCount

public int getMicrobeamManipulationLightSourceSettingsCount(int experimentIndex,
                                                   int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsCount in interface MetadataRetrieve

getListAnnotationCount
```
public int getListAnnotationCount()
```
Specified by:

getListAnnotationCount in interface MetadataRetrieve

getLongAnnotationCount
```
public int getLongAnnotationCount()
```
Specified by:

getLongAnnotationCount in interface MetadataRetrieve

getMapAnnotationCount
```
public int getMapAnnotationCount()
```
Specified by:

getMapAnnotationCount in interface MetadataRetrieve

getMicrobeamManipulationCount
```
public int getMicrobeamManipulationCount(int experimentIndex)
```
Specified by:

getMicrobeamManipulationCount in interface MetadataRetrieve

getMicrobeamManipulationRefCount
```
public int getMicrobeamManipulationRefCount(int imageIndex)
```
Specified by:

getMicrobeamManipulationRefCount in interface MetadataRetrieve

getObjectiveCount
```
public int getObjectiveCount(int instrumentIndex)
```
Specified by:

getObjectiveCount in interface MetadataRetrieve

getPlaneCount
```
public int getPlaneCount(int imageIndex)
```
Specified by:

getPlaneCount in interface MetadataRetrieve

getPlateCount
```
public int getPlateCount()
```
Specified by:

getPlateCount in interface MetadataRetrieve

getPlateAcquisitionCount
```
public int getPlateAcquisitionCount(int plateIndex)
```
Specified by:

getPlateAcquisitionCount in interface MetadataRetrieve

getPlateRefCount
```
public int getPlateRefCount(int screenIndex)
```
Specified by:

getPlateRefCount in interface MetadataRetrieve

getProjectCount
```
public int getProjectCount()
```
Specified by:

getProjectCount in interface MetadataRetrieve

getROICount
```
public int getROICount()
```
Specified by:

getROICount in interface MetadataRetrieve

getImageROIRefCount
```
public int getImageROIRefCount(int imageIndex)
```
Specified by:

getImageROIRefCount in interface MetadataRetrieve

getMicrobeamManipulationROIRefCount

public int getMicrobeamManipulationROIRefCount(int experimentIndex,
                                      int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationROIRefCount in interface MetadataRetrieve

getReagentCount
```
public int getReagentCount(int screenIndex)
```
Specified by:

getReagentCount in interface MetadataRetrieve

getScreenCount
```
public int getScreenCount()
```
Specified by:

getScreenCount in interface MetadataRetrieve

getShapeCount
```
public int getShapeCount(int ROIIndex)
```
Specified by:

getShapeCount in interface MetadataRetrieve

getTagAnnotationCount
```
public int getTagAnnotationCount()
```
Specified by:

getTagAnnotationCount in interface MetadataRetrieve

getTermAnnotationCount
```
public int getTermAnnotationCount()
```
Specified by:

getTermAnnotationCount in interface MetadataRetrieve

getTiffDataCount
```
public int getTiffDataCount(int imageIndex)
```
Specified by:

getTiffDataCount in interface MetadataRetrieve

getTimestampAnnotationCount
```
public int getTimestampAnnotationCount()
```
Specified by:

getTimestampAnnotationCount in interface MetadataRetrieve

setUUIDValue

public void setUUIDValue(String value,
                int imageIndex,
                int tiffDataIndex)

Specified by:: setUUIDValue in interface MetadataStore

getUUIDValue

public String getUUIDValue(int imageIndex,
                  int tiffDataIndex)

Specified by:: getUUIDValue in interface MetadataRetrieve

getWellCount
```
public int getWellCount(int plateIndex)
```
Specified by:

getWellCount in interface MetadataRetrieve

getWellSampleCount

public int getWellSampleCount(int plateIndex,
                     int wellIndex)

Specified by:: getWellSampleCount in interface MetadataRetrieve

getWellSampleRefCount

public int getWellSampleRefCount(int plateIndex,
                        int plateAcquisitionIndex)

Specified by:: getWellSampleRefCount in interface MetadataRetrieve

getXMLAnnotationCount
```
public int getXMLAnnotationCount()
```
Specified by:

getXMLAnnotationCount in interface MetadataRetrieve

getPixelsBinDataBigEndian

public Boolean getPixelsBinDataBigEndian(int imageIndex,
                                int binDataIndex)

Specified by:: getPixelsBinDataBigEndian in interface MetadataRetrieve

getUUID
```
public String getUUID()
```
Gets the UUID associated with this collection of metadata.

Specified by:

getUUID in interface MetadataRetrieve

getMapAnnotationValue
```
public List<MapPair> getMapAnnotationValue(int mapAnnotationIndex)
```
Gets the Map value associated with this annotation

Specified by:

getMapAnnotationValue in interface MetadataRetrieve

getGenericExcitationSourceMap
```
public List<MapPair> getGenericExcitationSourceMap(int instrumentIndex,
                                          int lightSourceIndex)
```
Gets the Map value associated with this generic light source

Specified by:

getGenericExcitationSourceMap in interface MetadataRetrieve

getImagingEnvironmentMap
```
public List<MapPair> getImagingEnvironmentMap(int imageIndex)
```
Gets the Map value associated with this imaging environment

Specified by:

getImagingEnvironmentMap in interface MetadataRetrieve

getArcAnnotationRef

public String getArcAnnotationRef(int instrumentIndex,
                         int lightSourceIndex,
                         int annotationRefIndex)

Specified by:: getArcAnnotationRef in interface MetadataRetrieve

getArcID

public String getArcID(int instrumentIndex,
              int lightSourceIndex)

Specified by:: getArcID in interface MetadataRetrieve

getArcLotNumber

public String getArcLotNumber(int instrumentIndex,
                     int lightSourceIndex)

Specified by:: getArcLotNumber in interface MetadataRetrieve

getArcManufacturer

public String getArcManufacturer(int instrumentIndex,
                        int lightSourceIndex)

Specified by:: getArcManufacturer in interface MetadataRetrieve

getArcModel

public String getArcModel(int instrumentIndex,
                 int lightSourceIndex)

Specified by:: getArcModel in interface MetadataRetrieve

getArcPower

public Power getArcPower(int instrumentIndex,
                int lightSourceIndex)

Specified by:: getArcPower in interface MetadataRetrieve

getArcSerialNumber

public String getArcSerialNumber(int instrumentIndex,
                        int lightSourceIndex)

Specified by:: getArcSerialNumber in interface MetadataRetrieve

getArcType

public ArcType getArcType(int instrumentIndex,
                 int lightSourceIndex)

Specified by:: getArcType in interface MetadataRetrieve

getBinaryFileFileName
```
public String getBinaryFileFileName(int fileAnnotationIndex)
```
Specified by:

getBinaryFileFileName in interface MetadataRetrieve

getBinaryFileMIMEType
```
public String getBinaryFileMIMEType(int fileAnnotationIndex)
```
Specified by:

getBinaryFileMIMEType in interface MetadataRetrieve

getBinaryFileSize
```
public NonNegativeLong getBinaryFileSize(int fileAnnotationIndex)
```
Specified by:

getBinaryFileSize in interface MetadataRetrieve

getBinaryOnlyMetadataFile
```
public String getBinaryOnlyMetadataFile()
```
Specified by:

getBinaryOnlyMetadataFile in interface MetadataRetrieve

getBinaryOnlyUUID
```
public String getBinaryOnlyUUID()
```
Specified by:

getBinaryOnlyUUID in interface MetadataRetrieve

getBooleanAnnotationAnnotationRef

public String getBooleanAnnotationAnnotationRef(int booleanAnnotationIndex,
                                       int annotationRefIndex)

Specified by:: getBooleanAnnotationAnnotationRef in interface MetadataRetrieve

getBooleanAnnotationAnnotator
```
public String getBooleanAnnotationAnnotator(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationAnnotator in interface MetadataRetrieve

getBooleanAnnotationDescription
```
public String getBooleanAnnotationDescription(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationDescription in interface MetadataRetrieve

getBooleanAnnotationID
```
public String getBooleanAnnotationID(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationID in interface MetadataRetrieve

getBooleanAnnotationNamespace
```
public String getBooleanAnnotationNamespace(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationNamespace in interface MetadataRetrieve

getBooleanAnnotationValue
```
public Boolean getBooleanAnnotationValue(int booleanAnnotationIndex)
```
Specified by:

getBooleanAnnotationValue in interface MetadataRetrieve

getChannelAcquisitionMode

public AcquisitionMode getChannelAcquisitionMode(int imageIndex,
                                        int channelIndex)

Specified by:: getChannelAcquisitionMode in interface MetadataRetrieve

getChannelAnnotationRef

public String getChannelAnnotationRef(int imageIndex,
                             int channelIndex,
                             int annotationRefIndex)

Specified by:: getChannelAnnotationRef in interface MetadataRetrieve

getChannelColor

public Color getChannelColor(int imageIndex,
                    int channelIndex)

Specified by:: getChannelColor in interface MetadataRetrieve

getChannelContrastMethod

public ContrastMethod getChannelContrastMethod(int imageIndex,
                                      int channelIndex)

Specified by:: getChannelContrastMethod in interface MetadataRetrieve

getChannelEmissionWavelength

public Length getChannelEmissionWavelength(int imageIndex,
                                  int channelIndex)

Specified by:: getChannelEmissionWavelength in interface MetadataRetrieve

getChannelExcitationWavelength

public Length getChannelExcitationWavelength(int imageIndex,
                                    int channelIndex)

Specified by:: getChannelExcitationWavelength in interface MetadataRetrieve

getChannelFilterSetRef

public String getChannelFilterSetRef(int imageIndex,
                            int channelIndex)

Specified by:: getChannelFilterSetRef in interface MetadataRetrieve

getChannelFluor

public String getChannelFluor(int imageIndex,
                     int channelIndex)

Specified by:: getChannelFluor in interface MetadataRetrieve

getChannelID

public String getChannelID(int imageIndex,
                  int channelIndex)

Specified by:: getChannelID in interface MetadataRetrieve

getChannelIlluminationType

public IlluminationType getChannelIlluminationType(int imageIndex,
                                          int channelIndex)

Specified by:: getChannelIlluminationType in interface MetadataRetrieve

getChannelNDFilter

public Double getChannelNDFilter(int imageIndex,
                        int channelIndex)

Specified by:: getChannelNDFilter in interface MetadataRetrieve

getChannelName

public String getChannelName(int imageIndex,
                    int channelIndex)

Specified by:: getChannelName in interface MetadataRetrieve

getChannelPinholeSize

public Length getChannelPinholeSize(int imageIndex,
                           int channelIndex)

Specified by:: getChannelPinholeSize in interface MetadataRetrieve

getChannelPockelCellSetting

public Integer getChannelPockelCellSetting(int imageIndex,
                                  int channelIndex)

Specified by:: getChannelPockelCellSetting in interface MetadataRetrieve

getChannelSamplesPerPixel

public PositiveInteger getChannelSamplesPerPixel(int imageIndex,
                                        int channelIndex)

Specified by:: getChannelSamplesPerPixel in interface MetadataRetrieve

getCommentAnnotationAnnotationRef

public String getCommentAnnotationAnnotationRef(int commentAnnotationIndex,
                                       int annotationRefIndex)

Specified by:: getCommentAnnotationAnnotationRef in interface MetadataRetrieve

getCommentAnnotationAnnotator
```
public String getCommentAnnotationAnnotator(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationAnnotator in interface MetadataRetrieve

getCommentAnnotationDescription
```
public String getCommentAnnotationDescription(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationDescription in interface MetadataRetrieve

getCommentAnnotationID
```
public String getCommentAnnotationID(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationID in interface MetadataRetrieve

getCommentAnnotationNamespace
```
public String getCommentAnnotationNamespace(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationNamespace in interface MetadataRetrieve

getCommentAnnotationValue
```
public String getCommentAnnotationValue(int commentAnnotationIndex)
```
Specified by:

getCommentAnnotationValue in interface MetadataRetrieve

getDatasetAnnotationRef

public String getDatasetAnnotationRef(int datasetIndex,
                             int annotationRefIndex)

Specified by:: getDatasetAnnotationRef in interface MetadataRetrieve

getDatasetDescription
```
public String getDatasetDescription(int datasetIndex)
```
Specified by:

getDatasetDescription in interface MetadataRetrieve

getDatasetExperimenterGroupRef
```
public String getDatasetExperimenterGroupRef(int datasetIndex)
```
Specified by:

getDatasetExperimenterGroupRef in interface MetadataRetrieve

getDatasetExperimenterRef
```
public String getDatasetExperimenterRef(int datasetIndex)
```
Specified by:

getDatasetExperimenterRef in interface MetadataRetrieve

getDatasetID
```
public String getDatasetID(int datasetIndex)
```
Specified by:

getDatasetID in interface MetadataRetrieve

getDatasetImageRef

public String getDatasetImageRef(int datasetIndex,
                        int imageRefIndex)

Specified by:: getDatasetImageRef in interface MetadataRetrieve

getDatasetName
```
public String getDatasetName(int datasetIndex)
```
Specified by:

getDatasetName in interface MetadataRetrieve

getDetectorAmplificationGain

public Double getDetectorAmplificationGain(int instrumentIndex,
                                  int detectorIndex)

Specified by:: getDetectorAmplificationGain in interface MetadataRetrieve

getDetectorAnnotationRef

public String getDetectorAnnotationRef(int instrumentIndex,
                              int detectorIndex,
                              int annotationRefIndex)

Specified by:: getDetectorAnnotationRef in interface MetadataRetrieve

getDetectorGain

public Double getDetectorGain(int instrumentIndex,
                     int detectorIndex)

Specified by:: getDetectorGain in interface MetadataRetrieve

getDetectorID

public String getDetectorID(int instrumentIndex,
                   int detectorIndex)

Specified by:: getDetectorID in interface MetadataRetrieve

getDetectorLotNumber

public String getDetectorLotNumber(int instrumentIndex,
                          int detectorIndex)

Specified by:: getDetectorLotNumber in interface MetadataRetrieve

getDetectorManufacturer

public String getDetectorManufacturer(int instrumentIndex,
                             int detectorIndex)

Specified by:: getDetectorManufacturer in interface MetadataRetrieve

getDetectorModel

public String getDetectorModel(int instrumentIndex,
                      int detectorIndex)

Specified by:: getDetectorModel in interface MetadataRetrieve

getDetectorOffset

public Double getDetectorOffset(int instrumentIndex,
                       int detectorIndex)

Specified by:: getDetectorOffset in interface MetadataRetrieve

getDetectorSerialNumber

public String getDetectorSerialNumber(int instrumentIndex,
                             int detectorIndex)

Specified by:: getDetectorSerialNumber in interface MetadataRetrieve

getDetectorType

public DetectorType getDetectorType(int instrumentIndex,
                           int detectorIndex)

Specified by:: getDetectorType in interface MetadataRetrieve

getDetectorVoltage

public ElectricPotential getDetectorVoltage(int instrumentIndex,
                                   int detectorIndex)

Specified by:: getDetectorVoltage in interface MetadataRetrieve

getDetectorZoom

public Double getDetectorZoom(int instrumentIndex,
                     int detectorIndex)

Specified by:: getDetectorZoom in interface MetadataRetrieve

getDetectorSettingsBinning

public Binning getDetectorSettingsBinning(int imageIndex,
                                 int channelIndex)

Specified by:: getDetectorSettingsBinning in interface MetadataRetrieve

getDetectorSettingsGain

public Double getDetectorSettingsGain(int imageIndex,
                             int channelIndex)

Specified by:: getDetectorSettingsGain in interface MetadataRetrieve

getDetectorSettingsID

public String getDetectorSettingsID(int imageIndex,
                           int channelIndex)

Specified by:: getDetectorSettingsID in interface MetadataRetrieve

getDetectorSettingsIntegration

public PositiveInteger getDetectorSettingsIntegration(int imageIndex,
                                             int channelIndex)

Specified by:: getDetectorSettingsIntegration in interface MetadataRetrieve

getDetectorSettingsOffset

public Double getDetectorSettingsOffset(int imageIndex,
                               int channelIndex)

Specified by:: getDetectorSettingsOffset in interface MetadataRetrieve

getDetectorSettingsReadOutRate

public Frequency getDetectorSettingsReadOutRate(int imageIndex,
                                       int channelIndex)

Specified by:: getDetectorSettingsReadOutRate in interface MetadataRetrieve

getDetectorSettingsVoltage

public ElectricPotential getDetectorSettingsVoltage(int imageIndex,
                                           int channelIndex)

Specified by:: getDetectorSettingsVoltage in interface MetadataRetrieve

getDetectorSettingsZoom

public Double getDetectorSettingsZoom(int imageIndex,
                             int channelIndex)

Specified by:: getDetectorSettingsZoom in interface MetadataRetrieve

getDichroicAnnotationRef

public String getDichroicAnnotationRef(int instrumentIndex,
                              int dichroicIndex,
                              int annotationRefIndex)

Specified by:: getDichroicAnnotationRef in interface MetadataRetrieve

getDichroicID

public String getDichroicID(int instrumentIndex,
                   int dichroicIndex)

Specified by:: getDichroicID in interface MetadataRetrieve

getDichroicLotNumber

public String getDichroicLotNumber(int instrumentIndex,
                          int dichroicIndex)

Specified by:: getDichroicLotNumber in interface MetadataRetrieve

getDichroicManufacturer

public String getDichroicManufacturer(int instrumentIndex,
                             int dichroicIndex)

Specified by:: getDichroicManufacturer in interface MetadataRetrieve

getDichroicModel

public String getDichroicModel(int instrumentIndex,
                      int dichroicIndex)

Specified by:: getDichroicModel in interface MetadataRetrieve

getDichroicSerialNumber

public String getDichroicSerialNumber(int instrumentIndex,
                             int dichroicIndex)

Specified by:: getDichroicSerialNumber in interface MetadataRetrieve

getDoubleAnnotationAnnotationRef

public String getDoubleAnnotationAnnotationRef(int doubleAnnotationIndex,
                                      int annotationRefIndex)

Specified by:: getDoubleAnnotationAnnotationRef in interface MetadataRetrieve

getDoubleAnnotationAnnotator
```
public String getDoubleAnnotationAnnotator(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationAnnotator in interface MetadataRetrieve

getDoubleAnnotationDescription
```
public String getDoubleAnnotationDescription(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationDescription in interface MetadataRetrieve

getDoubleAnnotationID
```
public String getDoubleAnnotationID(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationID in interface MetadataRetrieve

getDoubleAnnotationNamespace
```
public String getDoubleAnnotationNamespace(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationNamespace in interface MetadataRetrieve

getDoubleAnnotationValue
```
public Double getDoubleAnnotationValue(int doubleAnnotationIndex)
```
Specified by:

getDoubleAnnotationValue in interface MetadataRetrieve

getEllipseAnnotationRef

public String getEllipseAnnotationRef(int ROIIndex,
                             int shapeIndex,
                             int annotationRefIndex)

Specified by:: getEllipseAnnotationRef in interface MetadataRetrieve

getEllipseFillColor

public Color getEllipseFillColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getEllipseFillColor in interface MetadataRetrieve

getEllipseFillRule

public FillRule getEllipseFillRule(int ROIIndex,
                          int shapeIndex)

Specified by:: getEllipseFillRule in interface MetadataRetrieve

getEllipseFontFamily

public FontFamily getEllipseFontFamily(int ROIIndex,
                              int shapeIndex)

Specified by:: getEllipseFontFamily in interface MetadataRetrieve

getEllipseFontSize

public Length getEllipseFontSize(int ROIIndex,
                        int shapeIndex)

Specified by:: getEllipseFontSize in interface MetadataRetrieve

getEllipseFontStyle

public FontStyle getEllipseFontStyle(int ROIIndex,
                            int shapeIndex)

Specified by:: getEllipseFontStyle in interface MetadataRetrieve

getEllipseID

public String getEllipseID(int ROIIndex,
                  int shapeIndex)

Specified by:: getEllipseID in interface MetadataRetrieve

getEllipseLineCap

public LineCap getEllipseLineCap(int ROIIndex,
                        int shapeIndex)

Specified by:: getEllipseLineCap in interface MetadataRetrieve

getEllipseLocked

public Boolean getEllipseLocked(int ROIIndex,
                       int shapeIndex)

Specified by:: getEllipseLocked in interface MetadataRetrieve

getEllipseStrokeColor

public Color getEllipseStrokeColor(int ROIIndex,
                          int shapeIndex)

Specified by:: getEllipseStrokeColor in interface MetadataRetrieve

getEllipseStrokeDashArray

public String getEllipseStrokeDashArray(int ROIIndex,
                               int shapeIndex)

Specified by:: getEllipseStrokeDashArray in interface MetadataRetrieve

getEllipseStrokeWidth

public Length getEllipseStrokeWidth(int ROIIndex,
                           int shapeIndex)

Specified by:: getEllipseStrokeWidth in interface MetadataRetrieve

getEllipseText

public String getEllipseText(int ROIIndex,
                    int shapeIndex)

Specified by:: getEllipseText in interface MetadataRetrieve

getEllipseTheC

public NonNegativeInteger getEllipseTheC(int ROIIndex,
                                int shapeIndex)

Specified by:: getEllipseTheC in interface MetadataRetrieve

getEllipseTheT

public NonNegativeInteger getEllipseTheT(int ROIIndex,
                                int shapeIndex)

Specified by:: getEllipseTheT in interface MetadataRetrieve

getEllipseTheZ

public NonNegativeInteger getEllipseTheZ(int ROIIndex,
                                int shapeIndex)

Specified by:: getEllipseTheZ in interface MetadataRetrieve

getEllipseTransform

public AffineTransform getEllipseTransform(int ROIIndex,
                                  int shapeIndex)

Specified by:: getEllipseTransform in interface MetadataRetrieve

getEllipseVisible

public Boolean getEllipseVisible(int ROIIndex,
                        int shapeIndex)

Specified by:: getEllipseVisible in interface MetadataRetrieve

getEllipseRadiusX

public Double getEllipseRadiusX(int ROIIndex,
                       int shapeIndex)

Specified by:: getEllipseRadiusX in interface MetadataRetrieve

getEllipseRadiusY

public Double getEllipseRadiusY(int ROIIndex,
                       int shapeIndex)

Specified by:: getEllipseRadiusY in interface MetadataRetrieve

getEllipseX

public Double getEllipseX(int ROIIndex,
                 int shapeIndex)

Specified by:: getEllipseX in interface MetadataRetrieve

getEllipseY

public Double getEllipseY(int ROIIndex,
                 int shapeIndex)

Specified by:: getEllipseY in interface MetadataRetrieve

getExperimentDescription
```
public String getExperimentDescription(int experimentIndex)
```
Specified by:

getExperimentDescription in interface MetadataRetrieve

getExperimentExperimenterRef
```
public String getExperimentExperimenterRef(int experimentIndex)
```
Specified by:

getExperimentExperimenterRef in interface MetadataRetrieve

getExperimentID
```
public String getExperimentID(int experimentIndex)
```
Specified by:

getExperimentID in interface MetadataRetrieve

getExperimentType
```
public ExperimentType getExperimentType(int experimentIndex)
```
Specified by:

getExperimentType in interface MetadataRetrieve

getExperimenterAnnotationRef

public String getExperimenterAnnotationRef(int experimenterIndex,
                                  int annotationRefIndex)

Specified by:: getExperimenterAnnotationRef in interface MetadataRetrieve

getExperimenterEmail
```
public String getExperimenterEmail(int experimenterIndex)
```
Specified by:

getExperimenterEmail in interface MetadataRetrieve

getExperimenterFirstName
```
public String getExperimenterFirstName(int experimenterIndex)
```
Specified by:

getExperimenterFirstName in interface MetadataRetrieve

getExperimenterID
```
public String getExperimenterID(int experimenterIndex)
```
Specified by:

getExperimenterID in interface MetadataRetrieve

getExperimenterInstitution
```
public String getExperimenterInstitution(int experimenterIndex)
```
Specified by:

getExperimenterInstitution in interface MetadataRetrieve

getExperimenterLastName
```
public String getExperimenterLastName(int experimenterIndex)
```
Specified by:

getExperimenterLastName in interface MetadataRetrieve

getExperimenterMiddleName
```
public String getExperimenterMiddleName(int experimenterIndex)
```
Specified by:

getExperimenterMiddleName in interface MetadataRetrieve

getExperimenterUserName
```
public String getExperimenterUserName(int experimenterIndex)
```
Specified by:

getExperimenterUserName in interface MetadataRetrieve

getExperimenterGroupAnnotationRef

public String getExperimenterGroupAnnotationRef(int experimenterGroupIndex,
                                       int annotationRefIndex)

Specified by:: getExperimenterGroupAnnotationRef in interface MetadataRetrieve

getExperimenterGroupDescription
```
public String getExperimenterGroupDescription(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupDescription in interface MetadataRetrieve

getExperimenterGroupExperimenterRef

public String getExperimenterGroupExperimenterRef(int experimenterGroupIndex,
                                         int experimenterRefIndex)

Specified by:: getExperimenterGroupExperimenterRef in interface MetadataRetrieve

getExperimenterGroupID
```
public String getExperimenterGroupID(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupID in interface MetadataRetrieve

getExperimenterGroupLeader

public String getExperimenterGroupLeader(int experimenterGroupIndex,
                                int leaderIndex)

Specified by:: getExperimenterGroupLeader in interface MetadataRetrieve

getExperimenterGroupName
```
public String getExperimenterGroupName(int experimenterGroupIndex)
```
Specified by:

getExperimenterGroupName in interface MetadataRetrieve

getFilamentAnnotationRef

public String getFilamentAnnotationRef(int instrumentIndex,
                              int lightSourceIndex,
                              int annotationRefIndex)

Specified by:: getFilamentAnnotationRef in interface MetadataRetrieve

getFilamentID

public String getFilamentID(int instrumentIndex,
                   int lightSourceIndex)

Specified by:: getFilamentID in interface MetadataRetrieve

getFilamentLotNumber

public String getFilamentLotNumber(int instrumentIndex,
                          int lightSourceIndex)

Specified by:: getFilamentLotNumber in interface MetadataRetrieve

getFilamentManufacturer

public String getFilamentManufacturer(int instrumentIndex,
                             int lightSourceIndex)

Specified by:: getFilamentManufacturer in interface MetadataRetrieve

getFilamentModel

public String getFilamentModel(int instrumentIndex,
                      int lightSourceIndex)

Specified by:: getFilamentModel in interface MetadataRetrieve

getFilamentPower

public Power getFilamentPower(int instrumentIndex,
                     int lightSourceIndex)

Specified by:: getFilamentPower in interface MetadataRetrieve

getFilamentSerialNumber

public String getFilamentSerialNumber(int instrumentIndex,
                             int lightSourceIndex)

Specified by:: getFilamentSerialNumber in interface MetadataRetrieve

getFilamentType

public FilamentType getFilamentType(int instrumentIndex,
                           int lightSourceIndex)

Specified by:: getFilamentType in interface MetadataRetrieve

getFileAnnotationAnnotationRef

public String getFileAnnotationAnnotationRef(int fileAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getFileAnnotationAnnotationRef in interface MetadataRetrieve

getFileAnnotationAnnotator
```
public String getFileAnnotationAnnotator(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationAnnotator in interface MetadataRetrieve

getFileAnnotationDescription
```
public String getFileAnnotationDescription(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationDescription in interface MetadataRetrieve

getFileAnnotationID
```
public String getFileAnnotationID(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationID in interface MetadataRetrieve

getFileAnnotationNamespace
```
public String getFileAnnotationNamespace(int fileAnnotationIndex)
```
Specified by:

getFileAnnotationNamespace in interface MetadataRetrieve

getFilterAnnotationRef

public String getFilterAnnotationRef(int instrumentIndex,
                            int filterIndex,
                            int annotationRefIndex)

Specified by:: getFilterAnnotationRef in interface MetadataRetrieve

getFilterFilterWheel

public String getFilterFilterWheel(int instrumentIndex,
                          int filterIndex)

Specified by:: getFilterFilterWheel in interface MetadataRetrieve

getFilterID

public String getFilterID(int instrumentIndex,
                 int filterIndex)

Specified by:: getFilterID in interface MetadataRetrieve

getFilterLotNumber

public String getFilterLotNumber(int instrumentIndex,
                        int filterIndex)

Specified by:: getFilterLotNumber in interface MetadataRetrieve

getFilterManufacturer

public String getFilterManufacturer(int instrumentIndex,
                           int filterIndex)

Specified by:: getFilterManufacturer in interface MetadataRetrieve

getFilterModel

public String getFilterModel(int instrumentIndex,
                    int filterIndex)

Specified by:: getFilterModel in interface MetadataRetrieve

getFilterSerialNumber

public String getFilterSerialNumber(int instrumentIndex,
                           int filterIndex)

Specified by:: getFilterSerialNumber in interface MetadataRetrieve

getFilterType

public FilterType getFilterType(int instrumentIndex,
                       int filterIndex)

Specified by:: getFilterType in interface MetadataRetrieve

getFilterSetDichroicRef

public String getFilterSetDichroicRef(int instrumentIndex,
                             int filterSetIndex)

Specified by:: getFilterSetDichroicRef in interface MetadataRetrieve

getFilterSetEmissionFilterRef

public String getFilterSetEmissionFilterRef(int instrumentIndex,
                                   int filterSetIndex,
                                   int emissionFilterRefIndex)

Specified by:: getFilterSetEmissionFilterRef in interface MetadataRetrieve

getFilterSetExcitationFilterRef

public String getFilterSetExcitationFilterRef(int instrumentIndex,
                                     int filterSetIndex,
                                     int excitationFilterRefIndex)

Specified by:: getFilterSetExcitationFilterRef in interface MetadataRetrieve

getFilterSetID

public String getFilterSetID(int instrumentIndex,
                    int filterSetIndex)

Specified by:: getFilterSetID in interface MetadataRetrieve

getFilterSetLotNumber

public String getFilterSetLotNumber(int instrumentIndex,
                           int filterSetIndex)

Specified by:: getFilterSetLotNumber in interface MetadataRetrieve

getFilterSetManufacturer

public String getFilterSetManufacturer(int instrumentIndex,
                              int filterSetIndex)

Specified by:: getFilterSetManufacturer in interface MetadataRetrieve

getFilterSetModel

public String getFilterSetModel(int instrumentIndex,
                       int filterSetIndex)

Specified by:: getFilterSetModel in interface MetadataRetrieve

getFilterSetSerialNumber

public String getFilterSetSerialNumber(int instrumentIndex,
                              int filterSetIndex)

Specified by:: getFilterSetSerialNumber in interface MetadataRetrieve

getGenericExcitationSourceAnnotationRef

public String getGenericExcitationSourceAnnotationRef(int instrumentIndex,
                                             int lightSourceIndex,
                                             int annotationRefIndex)

Specified by:: getGenericExcitationSourceAnnotationRef in interface MetadataRetrieve

getGenericExcitationSourceID

public String getGenericExcitationSourceID(int instrumentIndex,
                                  int lightSourceIndex)

Specified by:: getGenericExcitationSourceID in interface MetadataRetrieve

getGenericExcitationSourceLotNumber

public String getGenericExcitationSourceLotNumber(int instrumentIndex,
                                         int lightSourceIndex)

Specified by:: getGenericExcitationSourceLotNumber in interface MetadataRetrieve

getGenericExcitationSourceManufacturer

public String getGenericExcitationSourceManufacturer(int instrumentIndex,
                                            int lightSourceIndex)

Specified by:: getGenericExcitationSourceManufacturer in interface MetadataRetrieve

getGenericExcitationSourceModel

public String getGenericExcitationSourceModel(int instrumentIndex,
                                     int lightSourceIndex)

Specified by:: getGenericExcitationSourceModel in interface MetadataRetrieve

getGenericExcitationSourcePower

public Power getGenericExcitationSourcePower(int instrumentIndex,
                                    int lightSourceIndex)

Specified by:: getGenericExcitationSourcePower in interface MetadataRetrieve

getGenericExcitationSourceSerialNumber

public String getGenericExcitationSourceSerialNumber(int instrumentIndex,
                                            int lightSourceIndex)

Specified by:: getGenericExcitationSourceSerialNumber in interface MetadataRetrieve

getImageAcquisitionDate
```
public Timestamp getImageAcquisitionDate(int imageIndex)
```
Specified by:

getImageAcquisitionDate in interface MetadataRetrieve

getImageAnnotationRef

public String getImageAnnotationRef(int imageIndex,
                           int annotationRefIndex)

Specified by:: getImageAnnotationRef in interface MetadataRetrieve

getImageDescription
```
public String getImageDescription(int imageIndex)
```
Specified by:

getImageDescription in interface MetadataRetrieve

getImageExperimentRef
```
public String getImageExperimentRef(int imageIndex)
```
Specified by:

getImageExperimentRef in interface MetadataRetrieve

getImageExperimenterGroupRef
```
public String getImageExperimenterGroupRef(int imageIndex)
```
Specified by:

getImageExperimenterGroupRef in interface MetadataRetrieve

getImageExperimenterRef
```
public String getImageExperimenterRef(int imageIndex)
```
Specified by:

getImageExperimenterRef in interface MetadataRetrieve

getImageID
```
public String getImageID(int imageIndex)
```
Specified by:

getImageID in interface MetadataRetrieve

getImageInstrumentRef
```
public String getImageInstrumentRef(int imageIndex)
```
Specified by:

getImageInstrumentRef in interface MetadataRetrieve

getImageMicrobeamManipulationRef

public String getImageMicrobeamManipulationRef(int imageIndex,
                                      int microbeamManipulationRefIndex)

Specified by:: getImageMicrobeamManipulationRef in interface MetadataRetrieve

getImageName
```
public String getImageName(int imageIndex)
```
Specified by:

getImageName in interface MetadataRetrieve

getImageROIRef

public String getImageROIRef(int imageIndex,
                    int ROIRefIndex)

Specified by:: getImageROIRef in interface MetadataRetrieve

getImagingEnvironmentAirPressure
```
public Pressure getImagingEnvironmentAirPressure(int imageIndex)
```
Specified by:

getImagingEnvironmentAirPressure in interface MetadataRetrieve

getImagingEnvironmentCO2Percent
```
public PercentFraction getImagingEnvironmentCO2Percent(int imageIndex)
```
Specified by:

getImagingEnvironmentCO2Percent in interface MetadataRetrieve

getImagingEnvironmentHumidity
```
public PercentFraction getImagingEnvironmentHumidity(int imageIndex)
```
Specified by:

getImagingEnvironmentHumidity in interface MetadataRetrieve

getImagingEnvironmentTemperature
```
public Temperature getImagingEnvironmentTemperature(int imageIndex)
```
Specified by:

getImagingEnvironmentTemperature in interface MetadataRetrieve

getInstrumentAnnotationRef

public String getInstrumentAnnotationRef(int instrumentIndex,
                                int annotationRefIndex)

Specified by:: getInstrumentAnnotationRef in interface MetadataRetrieve

getInstrumentID
```
public String getInstrumentID(int instrumentIndex)
```
Specified by:

getInstrumentID in interface MetadataRetrieve

getLabelAnnotationRef

public String getLabelAnnotationRef(int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)

Specified by:: getLabelAnnotationRef in interface MetadataRetrieve

getLabelFillColor

public Color getLabelFillColor(int ROIIndex,
                      int shapeIndex)

Specified by:: getLabelFillColor in interface MetadataRetrieve

getLabelFillRule

public FillRule getLabelFillRule(int ROIIndex,
                        int shapeIndex)

Specified by:: getLabelFillRule in interface MetadataRetrieve

getLabelFontFamily

public FontFamily getLabelFontFamily(int ROIIndex,
                            int shapeIndex)

Specified by:: getLabelFontFamily in interface MetadataRetrieve

getLabelFontSize

public Length getLabelFontSize(int ROIIndex,
                      int shapeIndex)

Specified by:: getLabelFontSize in interface MetadataRetrieve

getLabelFontStyle

public FontStyle getLabelFontStyle(int ROIIndex,
                          int shapeIndex)

Specified by:: getLabelFontStyle in interface MetadataRetrieve

getLabelID

public String getLabelID(int ROIIndex,
                int shapeIndex)

Specified by:: getLabelID in interface MetadataRetrieve

getLabelLineCap

public LineCap getLabelLineCap(int ROIIndex,
                      int shapeIndex)

Specified by:: getLabelLineCap in interface MetadataRetrieve

getLabelLocked

public Boolean getLabelLocked(int ROIIndex,
                     int shapeIndex)

Specified by:: getLabelLocked in interface MetadataRetrieve

getLabelStrokeColor

public Color getLabelStrokeColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getLabelStrokeColor in interface MetadataRetrieve

getLabelStrokeDashArray

public String getLabelStrokeDashArray(int ROIIndex,
                             int shapeIndex)

Specified by:: getLabelStrokeDashArray in interface MetadataRetrieve

getLabelStrokeWidth

public Length getLabelStrokeWidth(int ROIIndex,
                         int shapeIndex)

Specified by:: getLabelStrokeWidth in interface MetadataRetrieve

getLabelText

public String getLabelText(int ROIIndex,
                  int shapeIndex)

Specified by:: getLabelText in interface MetadataRetrieve

getLabelTheC

public NonNegativeInteger getLabelTheC(int ROIIndex,
                              int shapeIndex)

Specified by:: getLabelTheC in interface MetadataRetrieve

getLabelTheT

public NonNegativeInteger getLabelTheT(int ROIIndex,
                              int shapeIndex)

Specified by:: getLabelTheT in interface MetadataRetrieve

getLabelTheZ

public NonNegativeInteger getLabelTheZ(int ROIIndex,
                              int shapeIndex)

Specified by:: getLabelTheZ in interface MetadataRetrieve

getLabelTransform

public AffineTransform getLabelTransform(int ROIIndex,
                                int shapeIndex)

Specified by:: getLabelTransform in interface MetadataRetrieve

getLabelVisible

public Boolean getLabelVisible(int ROIIndex,
                      int shapeIndex)

Specified by:: getLabelVisible in interface MetadataRetrieve

getLabelX

public Double getLabelX(int ROIIndex,
               int shapeIndex)

Specified by:: getLabelX in interface MetadataRetrieve

getLabelY

public Double getLabelY(int ROIIndex,
               int shapeIndex)

Specified by:: getLabelY in interface MetadataRetrieve

getLaserAnnotationRef

public String getLaserAnnotationRef(int instrumentIndex,
                           int lightSourceIndex,
                           int annotationRefIndex)

Specified by:: getLaserAnnotationRef in interface MetadataRetrieve

getLaserID

public String getLaserID(int instrumentIndex,
                int lightSourceIndex)

Specified by:: getLaserID in interface MetadataRetrieve

getLaserLotNumber

public String getLaserLotNumber(int instrumentIndex,
                       int lightSourceIndex)

Specified by:: getLaserLotNumber in interface MetadataRetrieve

getLaserManufacturer

public String getLaserManufacturer(int instrumentIndex,
                          int lightSourceIndex)

Specified by:: getLaserManufacturer in interface MetadataRetrieve

getLaserModel

public String getLaserModel(int instrumentIndex,
                   int lightSourceIndex)

Specified by:: getLaserModel in interface MetadataRetrieve

getLaserPower

public Power getLaserPower(int instrumentIndex,
                  int lightSourceIndex)

Specified by:: getLaserPower in interface MetadataRetrieve

getLaserSerialNumber

public String getLaserSerialNumber(int instrumentIndex,
                          int lightSourceIndex)

Specified by:: getLaserSerialNumber in interface MetadataRetrieve

getLaserFrequencyMultiplication

public PositiveInteger getLaserFrequencyMultiplication(int instrumentIndex,
                                              int lightSourceIndex)

Specified by:: getLaserFrequencyMultiplication in interface MetadataRetrieve

getLaserLaserMedium

public LaserMedium getLaserLaserMedium(int instrumentIndex,
                              int lightSourceIndex)

Specified by:: getLaserLaserMedium in interface MetadataRetrieve

getLaserPockelCell

public Boolean getLaserPockelCell(int instrumentIndex,
                         int lightSourceIndex)

Specified by:: getLaserPockelCell in interface MetadataRetrieve

getLaserPulse

public Pulse getLaserPulse(int instrumentIndex,
                  int lightSourceIndex)

Specified by:: getLaserPulse in interface MetadataRetrieve

getLaserPump

public String getLaserPump(int instrumentIndex,
                  int lightSourceIndex)

Specified by:: getLaserPump in interface MetadataRetrieve

getLaserRepetitionRate

public Frequency getLaserRepetitionRate(int instrumentIndex,
                               int lightSourceIndex)

Specified by:: getLaserRepetitionRate in interface MetadataRetrieve

getLaserTuneable

public Boolean getLaserTuneable(int instrumentIndex,
                       int lightSourceIndex)

Specified by:: getLaserTuneable in interface MetadataRetrieve

getLaserType

public LaserType getLaserType(int instrumentIndex,
                     int lightSourceIndex)

Specified by:: getLaserType in interface MetadataRetrieve

getLaserWavelength

public Length getLaserWavelength(int instrumentIndex,
                        int lightSourceIndex)

Specified by:: getLaserWavelength in interface MetadataRetrieve

getLightEmittingDiodeAnnotationRef

public String getLightEmittingDiodeAnnotationRef(int instrumentIndex,
                                        int lightSourceIndex,
                                        int annotationRefIndex)

Specified by:: getLightEmittingDiodeAnnotationRef in interface MetadataRetrieve

getLightEmittingDiodeID

public String getLightEmittingDiodeID(int instrumentIndex,
                             int lightSourceIndex)

Specified by:: getLightEmittingDiodeID in interface MetadataRetrieve

getLightEmittingDiodeLotNumber

public String getLightEmittingDiodeLotNumber(int instrumentIndex,
                                    int lightSourceIndex)

Specified by:: getLightEmittingDiodeLotNumber in interface MetadataRetrieve

getLightEmittingDiodeManufacturer

public String getLightEmittingDiodeManufacturer(int instrumentIndex,
                                       int lightSourceIndex)

Specified by:: getLightEmittingDiodeManufacturer in interface MetadataRetrieve

getLightEmittingDiodeModel

public String getLightEmittingDiodeModel(int instrumentIndex,
                                int lightSourceIndex)

Specified by:: getLightEmittingDiodeModel in interface MetadataRetrieve

getLightEmittingDiodePower

public Power getLightEmittingDiodePower(int instrumentIndex,
                               int lightSourceIndex)

Specified by:: getLightEmittingDiodePower in interface MetadataRetrieve

getLightEmittingDiodeSerialNumber

public String getLightEmittingDiodeSerialNumber(int instrumentIndex,
                                       int lightSourceIndex)

Specified by:: getLightEmittingDiodeSerialNumber in interface MetadataRetrieve

getLightPathAnnotationRef

public String getLightPathAnnotationRef(int imageIndex,
                               int channelIndex,
                               int annotationRefIndex)

Specified by:: getLightPathAnnotationRef in interface MetadataRetrieve

getLightPathDichroicRef

public String getLightPathDichroicRef(int imageIndex,
                             int channelIndex)

Specified by:: getLightPathDichroicRef in interface MetadataRetrieve

getLightPathEmissionFilterRef

public String getLightPathEmissionFilterRef(int imageIndex,
                                   int channelIndex,
                                   int emissionFilterRefIndex)

Specified by:: getLightPathEmissionFilterRef in interface MetadataRetrieve

getLightPathExcitationFilterRef

public String getLightPathExcitationFilterRef(int imageIndex,
                                     int channelIndex,
                                     int excitationFilterRefIndex)

Specified by:: getLightPathExcitationFilterRef in interface MetadataRetrieve

getChannelLightSourceSettingsAttenuation

public PercentFraction getChannelLightSourceSettingsAttenuation(int imageIndex,
                                                       int channelIndex)

Specified by:: getChannelLightSourceSettingsAttenuation in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsAttenuation

public PercentFraction getMicrobeamManipulationLightSourceSettingsAttenuation(int experimentIndex,
                                                                     int microbeamManipulationIndex,
                                                                     int lightSourceSettingsIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataRetrieve

getChannelLightSourceSettingsID

public String getChannelLightSourceSettingsID(int imageIndex,
                                     int channelIndex)

Specified by:: getChannelLightSourceSettingsID in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsID

public String getMicrobeamManipulationLightSourceSettingsID(int experimentIndex,
                                                   int microbeamManipulationIndex,
                                                   int lightSourceSettingsIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsID in interface MetadataRetrieve

getChannelLightSourceSettingsWavelength

public Length getChannelLightSourceSettingsWavelength(int imageIndex,
                                             int channelIndex)

Specified by:: getChannelLightSourceSettingsWavelength in interface MetadataRetrieve

getMicrobeamManipulationLightSourceSettingsWavelength

public Length getMicrobeamManipulationLightSourceSettingsWavelength(int experimentIndex,
                                                           int microbeamManipulationIndex,
                                                           int lightSourceSettingsIndex)

Specified by:: getMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataRetrieve

getLineAnnotationRef

public String getLineAnnotationRef(int ROIIndex,
                          int shapeIndex,
                          int annotationRefIndex)

Specified by:: getLineAnnotationRef in interface MetadataRetrieve

getLineFillColor

public Color getLineFillColor(int ROIIndex,
                     int shapeIndex)

Specified by:: getLineFillColor in interface MetadataRetrieve

getLineFillRule

public FillRule getLineFillRule(int ROIIndex,
                       int shapeIndex)

Specified by:: getLineFillRule in interface MetadataRetrieve

getLineFontFamily

public FontFamily getLineFontFamily(int ROIIndex,
                           int shapeIndex)

Specified by:: getLineFontFamily in interface MetadataRetrieve

getLineFontSize

public Length getLineFontSize(int ROIIndex,
                     int shapeIndex)

Specified by:: getLineFontSize in interface MetadataRetrieve

getLineFontStyle

public FontStyle getLineFontStyle(int ROIIndex,
                         int shapeIndex)

Specified by:: getLineFontStyle in interface MetadataRetrieve

getLineID

public String getLineID(int ROIIndex,
               int shapeIndex)

Specified by:: getLineID in interface MetadataRetrieve

getLineLineCap

public LineCap getLineLineCap(int ROIIndex,
                     int shapeIndex)

Specified by:: getLineLineCap in interface MetadataRetrieve

getLineLocked

public Boolean getLineLocked(int ROIIndex,
                    int shapeIndex)

Specified by:: getLineLocked in interface MetadataRetrieve

getLineStrokeColor

public Color getLineStrokeColor(int ROIIndex,
                       int shapeIndex)

Specified by:: getLineStrokeColor in interface MetadataRetrieve

getLineStrokeDashArray

public String getLineStrokeDashArray(int ROIIndex,
                            int shapeIndex)

Specified by:: getLineStrokeDashArray in interface MetadataRetrieve

getLineStrokeWidth

public Length getLineStrokeWidth(int ROIIndex,
                        int shapeIndex)

Specified by:: getLineStrokeWidth in interface MetadataRetrieve

getLineText

public String getLineText(int ROIIndex,
                 int shapeIndex)

Specified by:: getLineText in interface MetadataRetrieve

getLineTheC

public NonNegativeInteger getLineTheC(int ROIIndex,
                             int shapeIndex)

Specified by:: getLineTheC in interface MetadataRetrieve

getLineTheT

public NonNegativeInteger getLineTheT(int ROIIndex,
                             int shapeIndex)

Specified by:: getLineTheT in interface MetadataRetrieve

getLineTheZ

public NonNegativeInteger getLineTheZ(int ROIIndex,
                             int shapeIndex)

Specified by:: getLineTheZ in interface MetadataRetrieve

getLineTransform

public AffineTransform getLineTransform(int ROIIndex,
                               int shapeIndex)

Specified by:: getLineTransform in interface MetadataRetrieve

getLineVisible

public Boolean getLineVisible(int ROIIndex,
                     int shapeIndex)

Specified by:: getLineVisible in interface MetadataRetrieve

getLineMarkerEnd

public Marker getLineMarkerEnd(int ROIIndex,
                      int shapeIndex)

Specified by:: getLineMarkerEnd in interface MetadataRetrieve

getLineMarkerStart

public Marker getLineMarkerStart(int ROIIndex,
                        int shapeIndex)

Specified by:: getLineMarkerStart in interface MetadataRetrieve

getLineX1

public Double getLineX1(int ROIIndex,
               int shapeIndex)

Specified by:: getLineX1 in interface MetadataRetrieve

getLineX2

public Double getLineX2(int ROIIndex,
               int shapeIndex)

Specified by:: getLineX2 in interface MetadataRetrieve

getLineY1

public Double getLineY1(int ROIIndex,
               int shapeIndex)

Specified by:: getLineY1 in interface MetadataRetrieve

getLineY2

public Double getLineY2(int ROIIndex,
               int shapeIndex)

Specified by:: getLineY2 in interface MetadataRetrieve

getListAnnotationAnnotationRef

public String getListAnnotationAnnotationRef(int listAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getListAnnotationAnnotationRef in interface MetadataRetrieve

getListAnnotationAnnotator
```
public String getListAnnotationAnnotator(int listAnnotationIndex)
```
Specified by:

getListAnnotationAnnotator in interface MetadataRetrieve

getListAnnotationDescription
```
public String getListAnnotationDescription(int listAnnotationIndex)
```
Specified by:

getListAnnotationDescription in interface MetadataRetrieve

getListAnnotationID
```
public String getListAnnotationID(int listAnnotationIndex)
```
Specified by:

getListAnnotationID in interface MetadataRetrieve

getListAnnotationNamespace
```
public String getListAnnotationNamespace(int listAnnotationIndex)
```
Specified by:

getListAnnotationNamespace in interface MetadataRetrieve

getLongAnnotationAnnotationRef

public String getLongAnnotationAnnotationRef(int longAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getLongAnnotationAnnotationRef in interface MetadataRetrieve

getLongAnnotationAnnotator
```
public String getLongAnnotationAnnotator(int longAnnotationIndex)
```
Specified by:

getLongAnnotationAnnotator in interface MetadataRetrieve

getLongAnnotationDescription
```
public String getLongAnnotationDescription(int longAnnotationIndex)
```
Specified by:

getLongAnnotationDescription in interface MetadataRetrieve

getLongAnnotationID
```
public String getLongAnnotationID(int longAnnotationIndex)
```
Specified by:

getLongAnnotationID in interface MetadataRetrieve

getLongAnnotationNamespace
```
public String getLongAnnotationNamespace(int longAnnotationIndex)
```
Specified by:

getLongAnnotationNamespace in interface MetadataRetrieve

getLongAnnotationValue
```
public Long getLongAnnotationValue(int longAnnotationIndex)
```
Specified by:

getLongAnnotationValue in interface MetadataRetrieve

getMapAnnotationAnnotationRef

public String getMapAnnotationAnnotationRef(int mapAnnotationIndex,
                                   int annotationRefIndex)

Specified by:: getMapAnnotationAnnotationRef in interface MetadataRetrieve

getMapAnnotationAnnotator
```
public String getMapAnnotationAnnotator(int mapAnnotationIndex)
```
Specified by:

getMapAnnotationAnnotator in interface MetadataRetrieve

getMapAnnotationDescription
```
public String getMapAnnotationDescription(int mapAnnotationIndex)
```
Specified by:

getMapAnnotationDescription in interface MetadataRetrieve

getMapAnnotationID
```
public String getMapAnnotationID(int mapAnnotationIndex)
```
Specified by:

getMapAnnotationID in interface MetadataRetrieve

getMapAnnotationNamespace
```
public String getMapAnnotationNamespace(int mapAnnotationIndex)
```
Specified by:

getMapAnnotationNamespace in interface MetadataRetrieve

getMaskAnnotationRef

public String getMaskAnnotationRef(int ROIIndex,
                          int shapeIndex,
                          int annotationRefIndex)

Specified by:: getMaskAnnotationRef in interface MetadataRetrieve

getMaskFillColor

public Color getMaskFillColor(int ROIIndex,
                     int shapeIndex)

Specified by:: getMaskFillColor in interface MetadataRetrieve

getMaskFillRule

public FillRule getMaskFillRule(int ROIIndex,
                       int shapeIndex)

Specified by:: getMaskFillRule in interface MetadataRetrieve

getMaskFontFamily

public FontFamily getMaskFontFamily(int ROIIndex,
                           int shapeIndex)

Specified by:: getMaskFontFamily in interface MetadataRetrieve

getMaskFontSize

public Length getMaskFontSize(int ROIIndex,
                     int shapeIndex)

Specified by:: getMaskFontSize in interface MetadataRetrieve

getMaskFontStyle

public FontStyle getMaskFontStyle(int ROIIndex,
                         int shapeIndex)

Specified by:: getMaskFontStyle in interface MetadataRetrieve

getMaskID

public String getMaskID(int ROIIndex,
               int shapeIndex)

Specified by:: getMaskID in interface MetadataRetrieve

getMaskLineCap

public LineCap getMaskLineCap(int ROIIndex,
                     int shapeIndex)

Specified by:: getMaskLineCap in interface MetadataRetrieve

getMaskLocked

public Boolean getMaskLocked(int ROIIndex,
                    int shapeIndex)

Specified by:: getMaskLocked in interface MetadataRetrieve

getMaskStrokeColor

public Color getMaskStrokeColor(int ROIIndex,
                       int shapeIndex)

Specified by:: getMaskStrokeColor in interface MetadataRetrieve

getMaskStrokeDashArray

public String getMaskStrokeDashArray(int ROIIndex,
                            int shapeIndex)

Specified by:: getMaskStrokeDashArray in interface MetadataRetrieve

getMaskStrokeWidth

public Length getMaskStrokeWidth(int ROIIndex,
                        int shapeIndex)

Specified by:: getMaskStrokeWidth in interface MetadataRetrieve

getMaskText

public String getMaskText(int ROIIndex,
                 int shapeIndex)

Specified by:: getMaskText in interface MetadataRetrieve

getMaskTheC

public NonNegativeInteger getMaskTheC(int ROIIndex,
                             int shapeIndex)

Specified by:: getMaskTheC in interface MetadataRetrieve

getMaskTheT

public NonNegativeInteger getMaskTheT(int ROIIndex,
                             int shapeIndex)

Specified by:: getMaskTheT in interface MetadataRetrieve

getMaskTheZ

public NonNegativeInteger getMaskTheZ(int ROIIndex,
                             int shapeIndex)

Specified by:: getMaskTheZ in interface MetadataRetrieve

getMaskTransform

public AffineTransform getMaskTransform(int ROIIndex,
                               int shapeIndex)

Specified by:: getMaskTransform in interface MetadataRetrieve

getMaskVisible

public Boolean getMaskVisible(int ROIIndex,
                     int shapeIndex)

Specified by:: getMaskVisible in interface MetadataRetrieve

getMaskHeight

public Double getMaskHeight(int ROIIndex,
                   int shapeIndex)

Specified by:: getMaskHeight in interface MetadataRetrieve

getMaskWidth

public Double getMaskWidth(int ROIIndex,
                  int shapeIndex)

Specified by:: getMaskWidth in interface MetadataRetrieve

getMaskX

public Double getMaskX(int ROIIndex,
              int shapeIndex)

Specified by:: getMaskX in interface MetadataRetrieve

getMaskY

public Double getMaskY(int ROIIndex,
              int shapeIndex)

Specified by:: getMaskY in interface MetadataRetrieve

getMicrobeamManipulationDescription

public String getMicrobeamManipulationDescription(int experimentIndex,
                                         int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationDescription in interface MetadataRetrieve

getMicrobeamManipulationExperimenterRef

public String getMicrobeamManipulationExperimenterRef(int experimentIndex,
                                             int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationExperimenterRef in interface MetadataRetrieve

getMicrobeamManipulationID

public String getMicrobeamManipulationID(int experimentIndex,
                                int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationID in interface MetadataRetrieve

getMicrobeamManipulationROIRef

public String getMicrobeamManipulationROIRef(int experimentIndex,
                                    int microbeamManipulationIndex,
                                    int ROIRefIndex)

Specified by:: getMicrobeamManipulationROIRef in interface MetadataRetrieve

getMicrobeamManipulationType

public MicrobeamManipulationType getMicrobeamManipulationType(int experimentIndex,
                                                     int microbeamManipulationIndex)

Specified by:: getMicrobeamManipulationType in interface MetadataRetrieve

getMicroscopeLotNumber
```
public String getMicroscopeLotNumber(int instrumentIndex)
```
Specified by:

getMicroscopeLotNumber in interface MetadataRetrieve

getMicroscopeManufacturer
```
public String getMicroscopeManufacturer(int instrumentIndex)
```
Specified by:

getMicroscopeManufacturer in interface MetadataRetrieve

getMicroscopeModel
```
public String getMicroscopeModel(int instrumentIndex)
```
Specified by:

getMicroscopeModel in interface MetadataRetrieve

getMicroscopeSerialNumber
```
public String getMicroscopeSerialNumber(int instrumentIndex)
```
Specified by:

getMicroscopeSerialNumber in interface MetadataRetrieve

getMicroscopeType
```
public MicroscopeType getMicroscopeType(int instrumentIndex)
```
Specified by:

getMicroscopeType in interface MetadataRetrieve

getObjectiveAnnotationRef

public String getObjectiveAnnotationRef(int instrumentIndex,
                               int objectiveIndex,
                               int annotationRefIndex)

Specified by:: getObjectiveAnnotationRef in interface MetadataRetrieve

getObjectiveCalibratedMagnification

public Double getObjectiveCalibratedMagnification(int instrumentIndex,
                                         int objectiveIndex)

Specified by:: getObjectiveCalibratedMagnification in interface MetadataRetrieve

getObjectiveCorrection

public Correction getObjectiveCorrection(int instrumentIndex,
                                int objectiveIndex)

Specified by:: getObjectiveCorrection in interface MetadataRetrieve

getObjectiveID

public String getObjectiveID(int instrumentIndex,
                    int objectiveIndex)

Specified by:: getObjectiveID in interface MetadataRetrieve

getObjectiveImmersion

public Immersion getObjectiveImmersion(int instrumentIndex,
                              int objectiveIndex)

Specified by:: getObjectiveImmersion in interface MetadataRetrieve

getObjectiveIris

public Boolean getObjectiveIris(int instrumentIndex,
                       int objectiveIndex)

Specified by:: getObjectiveIris in interface MetadataRetrieve

getObjectiveLensNA

public Double getObjectiveLensNA(int instrumentIndex,
                        int objectiveIndex)

Specified by:: getObjectiveLensNA in interface MetadataRetrieve

getObjectiveLotNumber

public String getObjectiveLotNumber(int instrumentIndex,
                           int objectiveIndex)

Specified by:: getObjectiveLotNumber in interface MetadataRetrieve

getObjectiveManufacturer

public String getObjectiveManufacturer(int instrumentIndex,
                              int objectiveIndex)

Specified by:: getObjectiveManufacturer in interface MetadataRetrieve

getObjectiveModel

public String getObjectiveModel(int instrumentIndex,
                       int objectiveIndex)

Specified by:: getObjectiveModel in interface MetadataRetrieve

getObjectiveNominalMagnification

public Double getObjectiveNominalMagnification(int instrumentIndex,
                                      int objectiveIndex)

Specified by:: getObjectiveNominalMagnification in interface MetadataRetrieve

getObjectiveSerialNumber

public String getObjectiveSerialNumber(int instrumentIndex,
                              int objectiveIndex)

Specified by:: getObjectiveSerialNumber in interface MetadataRetrieve

getObjectiveWorkingDistance

public Length getObjectiveWorkingDistance(int instrumentIndex,
                                 int objectiveIndex)

Specified by:: getObjectiveWorkingDistance in interface MetadataRetrieve

getObjectiveSettingsCorrectionCollar
```
public Double getObjectiveSettingsCorrectionCollar(int imageIndex)
```
Specified by:

getObjectiveSettingsCorrectionCollar in interface MetadataRetrieve

getObjectiveSettingsID
```
public String getObjectiveSettingsID(int imageIndex)
```
Specified by:

getObjectiveSettingsID in interface MetadataRetrieve

getObjectiveSettingsMedium
```
public Medium getObjectiveSettingsMedium(int imageIndex)
```
Specified by:

getObjectiveSettingsMedium in interface MetadataRetrieve

getObjectiveSettingsRefractiveIndex
```
public Double getObjectiveSettingsRefractiveIndex(int imageIndex)
```
Specified by:

getObjectiveSettingsRefractiveIndex in interface MetadataRetrieve

getPixelsBigEndian
```
public Boolean getPixelsBigEndian(int imageIndex)
```
Specified by:

getPixelsBigEndian in interface MetadataRetrieve

getPixelsDimensionOrder
```
public DimensionOrder getPixelsDimensionOrder(int imageIndex)
```
Specified by:

getPixelsDimensionOrder in interface MetadataRetrieve

getPixelsID
```
public String getPixelsID(int imageIndex)
```
Specified by:

getPixelsID in interface MetadataRetrieve

getPixelsInterleaved
```
public Boolean getPixelsInterleaved(int imageIndex)
```
Specified by:

getPixelsInterleaved in interface MetadataRetrieve

getPixelsPhysicalSizeX
```
public Length getPixelsPhysicalSizeX(int imageIndex)
```
Specified by:

getPixelsPhysicalSizeX in interface MetadataRetrieve

getPixelsPhysicalSizeY
```
public Length getPixelsPhysicalSizeY(int imageIndex)
```
Specified by:

getPixelsPhysicalSizeY in interface MetadataRetrieve

getPixelsPhysicalSizeZ
```
public Length getPixelsPhysicalSizeZ(int imageIndex)
```
Specified by:

getPixelsPhysicalSizeZ in interface MetadataRetrieve

getPixelsSignificantBits
```
public PositiveInteger getPixelsSignificantBits(int imageIndex)
```
Specified by:

getPixelsSignificantBits in interface MetadataRetrieve

getPixelsSizeC
```
public PositiveInteger getPixelsSizeC(int imageIndex)
```
Specified by:

getPixelsSizeC in interface MetadataRetrieve

getPixelsSizeT
```
public PositiveInteger getPixelsSizeT(int imageIndex)
```
Specified by:

getPixelsSizeT in interface MetadataRetrieve

getPixelsSizeX
```
public PositiveInteger getPixelsSizeX(int imageIndex)
```
Specified by:

getPixelsSizeX in interface MetadataRetrieve

getPixelsSizeY
```
public PositiveInteger getPixelsSizeY(int imageIndex)
```
Specified by:

getPixelsSizeY in interface MetadataRetrieve

getPixelsSizeZ
```
public PositiveInteger getPixelsSizeZ(int imageIndex)
```
Specified by:

getPixelsSizeZ in interface MetadataRetrieve

getPixelsTimeIncrement
```
public Time getPixelsTimeIncrement(int imageIndex)
```
Specified by:

getPixelsTimeIncrement in interface MetadataRetrieve

getPixelsType
```
public PixelType getPixelsType(int imageIndex)
```
Specified by:

getPixelsType in interface MetadataRetrieve

getPlaneAnnotationRef

public String getPlaneAnnotationRef(int imageIndex,
                           int planeIndex,
                           int annotationRefIndex)

Specified by:: getPlaneAnnotationRef in interface MetadataRetrieve

getPlaneDeltaT

public Time getPlaneDeltaT(int imageIndex,
                  int planeIndex)

Specified by:: getPlaneDeltaT in interface MetadataRetrieve

getPlaneExposureTime

public Time getPlaneExposureTime(int imageIndex,
                        int planeIndex)

Specified by:: getPlaneExposureTime in interface MetadataRetrieve

getPlaneHashSHA1

public String getPlaneHashSHA1(int imageIndex,
                      int planeIndex)

Specified by:: getPlaneHashSHA1 in interface MetadataRetrieve

getPlanePositionX

public Length getPlanePositionX(int imageIndex,
                       int planeIndex)

Specified by:: getPlanePositionX in interface MetadataRetrieve

getPlanePositionY

public Length getPlanePositionY(int imageIndex,
                       int planeIndex)

Specified by:: getPlanePositionY in interface MetadataRetrieve

getPlanePositionZ

public Length getPlanePositionZ(int imageIndex,
                       int planeIndex)

Specified by:: getPlanePositionZ in interface MetadataRetrieve

getPlaneTheC

public NonNegativeInteger getPlaneTheC(int imageIndex,
                              int planeIndex)

Specified by:: getPlaneTheC in interface MetadataRetrieve

getPlaneTheT

public NonNegativeInteger getPlaneTheT(int imageIndex,
                              int planeIndex)

Specified by:: getPlaneTheT in interface MetadataRetrieve

getPlaneTheZ

public NonNegativeInteger getPlaneTheZ(int imageIndex,
                              int planeIndex)

Specified by:: getPlaneTheZ in interface MetadataRetrieve

getPlateAnnotationRef

public String getPlateAnnotationRef(int plateIndex,
                           int annotationRefIndex)

Specified by:: getPlateAnnotationRef in interface MetadataRetrieve

getPlateColumnNamingConvention
```
public NamingConvention getPlateColumnNamingConvention(int plateIndex)
```
Specified by:

getPlateColumnNamingConvention in interface MetadataRetrieve

getPlateColumns
```
public PositiveInteger getPlateColumns(int plateIndex)
```
Specified by:

getPlateColumns in interface MetadataRetrieve

getPlateDescription
```
public String getPlateDescription(int plateIndex)
```
Specified by:

getPlateDescription in interface MetadataRetrieve

getPlateExternalIdentifier
```
public String getPlateExternalIdentifier(int plateIndex)
```
Specified by:

getPlateExternalIdentifier in interface MetadataRetrieve

getPlateFieldIndex
```
public NonNegativeInteger getPlateFieldIndex(int plateIndex)
```
Specified by:

getPlateFieldIndex in interface MetadataRetrieve

getPlateID
```
public String getPlateID(int plateIndex)
```
Specified by:

getPlateID in interface MetadataRetrieve

getPlateName
```
public String getPlateName(int plateIndex)
```
Specified by:

getPlateName in interface MetadataRetrieve

getPlateRowNamingConvention
```
public NamingConvention getPlateRowNamingConvention(int plateIndex)
```
Specified by:

getPlateRowNamingConvention in interface MetadataRetrieve

getPlateRows
```
public PositiveInteger getPlateRows(int plateIndex)
```
Specified by:

getPlateRows in interface MetadataRetrieve

getPlateStatus
```
public String getPlateStatus(int plateIndex)
```
Specified by:

getPlateStatus in interface MetadataRetrieve

getPlateWellOriginX
```
public Length getPlateWellOriginX(int plateIndex)
```
Specified by:

getPlateWellOriginX in interface MetadataRetrieve

getPlateWellOriginY
```
public Length getPlateWellOriginY(int plateIndex)
```
Specified by:

getPlateWellOriginY in interface MetadataRetrieve

getPlateAcquisitionAnnotationRef

public String getPlateAcquisitionAnnotationRef(int plateIndex,
                                      int plateAcquisitionIndex,
                                      int annotationRefIndex)

Specified by:: getPlateAcquisitionAnnotationRef in interface MetadataRetrieve

getPlateAcquisitionDescription

public String getPlateAcquisitionDescription(int plateIndex,
                                    int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionDescription in interface MetadataRetrieve

getPlateAcquisitionEndTime

public Timestamp getPlateAcquisitionEndTime(int plateIndex,
                                   int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionEndTime in interface MetadataRetrieve

getPlateAcquisitionID

public String getPlateAcquisitionID(int plateIndex,
                           int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionID in interface MetadataRetrieve

getPlateAcquisitionMaximumFieldCount

public PositiveInteger getPlateAcquisitionMaximumFieldCount(int plateIndex,
                                                   int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionMaximumFieldCount in interface MetadataRetrieve

getPlateAcquisitionName

public String getPlateAcquisitionName(int plateIndex,
                             int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionName in interface MetadataRetrieve

getPlateAcquisitionStartTime

public Timestamp getPlateAcquisitionStartTime(int plateIndex,
                                     int plateAcquisitionIndex)

Specified by:: getPlateAcquisitionStartTime in interface MetadataRetrieve

getPlateAcquisitionWellSampleRef

public String getPlateAcquisitionWellSampleRef(int plateIndex,
                                      int plateAcquisitionIndex,
                                      int wellSampleRefIndex)

Specified by:: getPlateAcquisitionWellSampleRef in interface MetadataRetrieve

getPointAnnotationRef

public String getPointAnnotationRef(int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)

Specified by:: getPointAnnotationRef in interface MetadataRetrieve

getPointFillColor

public Color getPointFillColor(int ROIIndex,
                      int shapeIndex)

Specified by:: getPointFillColor in interface MetadataRetrieve

getPointFillRule

public FillRule getPointFillRule(int ROIIndex,
                        int shapeIndex)

Specified by:: getPointFillRule in interface MetadataRetrieve

getPointFontFamily

public FontFamily getPointFontFamily(int ROIIndex,
                            int shapeIndex)

Specified by:: getPointFontFamily in interface MetadataRetrieve

getPointFontSize

public Length getPointFontSize(int ROIIndex,
                      int shapeIndex)

Specified by:: getPointFontSize in interface MetadataRetrieve

getPointFontStyle

public FontStyle getPointFontStyle(int ROIIndex,
                          int shapeIndex)

Specified by:: getPointFontStyle in interface MetadataRetrieve

getPointID

public String getPointID(int ROIIndex,
                int shapeIndex)

Specified by:: getPointID in interface MetadataRetrieve

getPointLineCap

public LineCap getPointLineCap(int ROIIndex,
                      int shapeIndex)

Specified by:: getPointLineCap in interface MetadataRetrieve

getPointLocked

public Boolean getPointLocked(int ROIIndex,
                     int shapeIndex)

Specified by:: getPointLocked in interface MetadataRetrieve

getPointStrokeColor

public Color getPointStrokeColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getPointStrokeColor in interface MetadataRetrieve

getPointStrokeDashArray

public String getPointStrokeDashArray(int ROIIndex,
                             int shapeIndex)

Specified by:: getPointStrokeDashArray in interface MetadataRetrieve

getPointStrokeWidth

public Length getPointStrokeWidth(int ROIIndex,
                         int shapeIndex)

Specified by:: getPointStrokeWidth in interface MetadataRetrieve

getPointText

public String getPointText(int ROIIndex,
                  int shapeIndex)

Specified by:: getPointText in interface MetadataRetrieve

getPointTheC

public NonNegativeInteger getPointTheC(int ROIIndex,
                              int shapeIndex)

Specified by:: getPointTheC in interface MetadataRetrieve

getPointTheT

public NonNegativeInteger getPointTheT(int ROIIndex,
                              int shapeIndex)

Specified by:: getPointTheT in interface MetadataRetrieve

getPointTheZ

public NonNegativeInteger getPointTheZ(int ROIIndex,
                              int shapeIndex)

Specified by:: getPointTheZ in interface MetadataRetrieve

getPointTransform

public AffineTransform getPointTransform(int ROIIndex,
                                int shapeIndex)

Specified by:: getPointTransform in interface MetadataRetrieve

getPointVisible

public Boolean getPointVisible(int ROIIndex,
                      int shapeIndex)

Specified by:: getPointVisible in interface MetadataRetrieve

getPointX

public Double getPointX(int ROIIndex,
               int shapeIndex)

Specified by:: getPointX in interface MetadataRetrieve

getPointY

public Double getPointY(int ROIIndex,
               int shapeIndex)

Specified by:: getPointY in interface MetadataRetrieve

getPolygonAnnotationRef

public String getPolygonAnnotationRef(int ROIIndex,
                             int shapeIndex,
                             int annotationRefIndex)

Specified by:: getPolygonAnnotationRef in interface MetadataRetrieve

getPolygonFillColor

public Color getPolygonFillColor(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolygonFillColor in interface MetadataRetrieve

getPolygonFillRule

public FillRule getPolygonFillRule(int ROIIndex,
                          int shapeIndex)

Specified by:: getPolygonFillRule in interface MetadataRetrieve

getPolygonFontFamily

public FontFamily getPolygonFontFamily(int ROIIndex,
                              int shapeIndex)

Specified by:: getPolygonFontFamily in interface MetadataRetrieve

getPolygonFontSize

public Length getPolygonFontSize(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolygonFontSize in interface MetadataRetrieve

getPolygonFontStyle

public FontStyle getPolygonFontStyle(int ROIIndex,
                            int shapeIndex)

Specified by:: getPolygonFontStyle in interface MetadataRetrieve

getPolygonID

public String getPolygonID(int ROIIndex,
                  int shapeIndex)

Specified by:: getPolygonID in interface MetadataRetrieve

getPolygonLineCap

public LineCap getPolygonLineCap(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolygonLineCap in interface MetadataRetrieve

getPolygonLocked

public Boolean getPolygonLocked(int ROIIndex,
                       int shapeIndex)

Specified by:: getPolygonLocked in interface MetadataRetrieve

getPolygonStrokeColor

public Color getPolygonStrokeColor(int ROIIndex,
                          int shapeIndex)

Specified by:: getPolygonStrokeColor in interface MetadataRetrieve

getPolygonStrokeDashArray

public String getPolygonStrokeDashArray(int ROIIndex,
                               int shapeIndex)

Specified by:: getPolygonStrokeDashArray in interface MetadataRetrieve

getPolygonStrokeWidth

public Length getPolygonStrokeWidth(int ROIIndex,
                           int shapeIndex)

Specified by:: getPolygonStrokeWidth in interface MetadataRetrieve

getPolygonText

public String getPolygonText(int ROIIndex,
                    int shapeIndex)

Specified by:: getPolygonText in interface MetadataRetrieve

getPolygonTheC

public NonNegativeInteger getPolygonTheC(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolygonTheC in interface MetadataRetrieve

getPolygonTheT

public NonNegativeInteger getPolygonTheT(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolygonTheT in interface MetadataRetrieve

getPolygonTheZ

public NonNegativeInteger getPolygonTheZ(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolygonTheZ in interface MetadataRetrieve

getPolygonTransform

public AffineTransform getPolygonTransform(int ROIIndex,
                                  int shapeIndex)

Specified by:: getPolygonTransform in interface MetadataRetrieve

getPolygonVisible

public Boolean getPolygonVisible(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolygonVisible in interface MetadataRetrieve

getPolygonPoints

public String getPolygonPoints(int ROIIndex,
                      int shapeIndex)

Specified by:: getPolygonPoints in interface MetadataRetrieve

getPolylineAnnotationRef

public String getPolylineAnnotationRef(int ROIIndex,
                              int shapeIndex,
                              int annotationRefIndex)

Specified by:: getPolylineAnnotationRef in interface MetadataRetrieve

getPolylineFillColor

public Color getPolylineFillColor(int ROIIndex,
                         int shapeIndex)

Specified by:: getPolylineFillColor in interface MetadataRetrieve

getPolylineFillRule

public FillRule getPolylineFillRule(int ROIIndex,
                           int shapeIndex)

Specified by:: getPolylineFillRule in interface MetadataRetrieve

getPolylineFontFamily

public FontFamily getPolylineFontFamily(int ROIIndex,
                               int shapeIndex)

Specified by:: getPolylineFontFamily in interface MetadataRetrieve

getPolylineFontSize

public Length getPolylineFontSize(int ROIIndex,
                         int shapeIndex)

Specified by:: getPolylineFontSize in interface MetadataRetrieve

getPolylineFontStyle

public FontStyle getPolylineFontStyle(int ROIIndex,
                             int shapeIndex)

Specified by:: getPolylineFontStyle in interface MetadataRetrieve

getPolylineID

public String getPolylineID(int ROIIndex,
                   int shapeIndex)

Specified by:: getPolylineID in interface MetadataRetrieve

getPolylineLineCap

public LineCap getPolylineLineCap(int ROIIndex,
                         int shapeIndex)

Specified by:: getPolylineLineCap in interface MetadataRetrieve

getPolylineLocked

public Boolean getPolylineLocked(int ROIIndex,
                        int shapeIndex)

Specified by:: getPolylineLocked in interface MetadataRetrieve

getPolylineStrokeColor

public Color getPolylineStrokeColor(int ROIIndex,
                           int shapeIndex)

Specified by:: getPolylineStrokeColor in interface MetadataRetrieve

getPolylineStrokeDashArray

public String getPolylineStrokeDashArray(int ROIIndex,
                                int shapeIndex)

Specified by:: getPolylineStrokeDashArray in interface MetadataRetrieve

getPolylineStrokeWidth

public Length getPolylineStrokeWidth(int ROIIndex,
                            int shapeIndex)

Specified by:: getPolylineStrokeWidth in interface MetadataRetrieve

getPolylineText

public String getPolylineText(int ROIIndex,
                     int shapeIndex)

Specified by:: getPolylineText in interface MetadataRetrieve

getPolylineTheC

public NonNegativeInteger getPolylineTheC(int ROIIndex,
                                 int shapeIndex)

Specified by:: getPolylineTheC in interface MetadataRetrieve

getPolylineTheT

public NonNegativeInteger getPolylineTheT(int ROIIndex,
                                 int shapeIndex)

Specified by:: getPolylineTheT in interface MetadataRetrieve

getPolylineTheZ

public NonNegativeInteger getPolylineTheZ(int ROIIndex,
                                 int shapeIndex)

Specified by:: getPolylineTheZ in interface MetadataRetrieve

getPolylineTransform

public AffineTransform getPolylineTransform(int ROIIndex,
                                   int shapeIndex)

Specified by:: getPolylineTransform in interface MetadataRetrieve

getPolylineVisible

public Boolean getPolylineVisible(int ROIIndex,
                         int shapeIndex)

Specified by:: getPolylineVisible in interface MetadataRetrieve

getPolylineMarkerEnd

public Marker getPolylineMarkerEnd(int ROIIndex,
                          int shapeIndex)

Specified by:: getPolylineMarkerEnd in interface MetadataRetrieve

getPolylineMarkerStart

public Marker getPolylineMarkerStart(int ROIIndex,
                            int shapeIndex)

Specified by:: getPolylineMarkerStart in interface MetadataRetrieve

getPolylinePoints

public String getPolylinePoints(int ROIIndex,
                       int shapeIndex)

Specified by:: getPolylinePoints in interface MetadataRetrieve

getProjectAnnotationRef

public String getProjectAnnotationRef(int projectIndex,
                             int annotationRefIndex)

Specified by:: getProjectAnnotationRef in interface MetadataRetrieve

getProjectDatasetRef

public String getProjectDatasetRef(int projectIndex,
                          int datasetRefIndex)

Specified by:: getProjectDatasetRef in interface MetadataRetrieve

getProjectDescription
```
public String getProjectDescription(int projectIndex)
```
Specified by:

getProjectDescription in interface MetadataRetrieve

getProjectExperimenterGroupRef
```
public String getProjectExperimenterGroupRef(int projectIndex)
```
Specified by:

getProjectExperimenterGroupRef in interface MetadataRetrieve

getProjectExperimenterRef
```
public String getProjectExperimenterRef(int projectIndex)
```
Specified by:

getProjectExperimenterRef in interface MetadataRetrieve

getProjectID
```
public String getProjectID(int projectIndex)
```
Specified by:

getProjectID in interface MetadataRetrieve

getProjectName
```
public String getProjectName(int projectIndex)
```
Specified by:

getProjectName in interface MetadataRetrieve

getROIAnnotationRef

public String getROIAnnotationRef(int ROIIndex,
                         int annotationRefIndex)

Specified by:: getROIAnnotationRef in interface MetadataRetrieve

getROIDescription
```
public String getROIDescription(int ROIIndex)
```
Specified by:

getROIDescription in interface MetadataRetrieve

getROIID
```
public String getROIID(int ROIIndex)
```
Specified by:

getROIID in interface MetadataRetrieve

getROIName
```
public String getROIName(int ROIIndex)
```
Specified by:

getROIName in interface MetadataRetrieve

getROINamespace
```
public String getROINamespace(int ROIIndex)
```
Specified by:

getROINamespace in interface MetadataRetrieve

getReagentAnnotationRef

public String getReagentAnnotationRef(int screenIndex,
                             int reagentIndex,
                             int annotationRefIndex)

Specified by:: getReagentAnnotationRef in interface MetadataRetrieve

getReagentDescription

public String getReagentDescription(int screenIndex,
                           int reagentIndex)

Specified by:: getReagentDescription in interface MetadataRetrieve

getReagentID

public String getReagentID(int screenIndex,
                  int reagentIndex)

Specified by:: getReagentID in interface MetadataRetrieve

getReagentName

public String getReagentName(int screenIndex,
                    int reagentIndex)

Specified by:: getReagentName in interface MetadataRetrieve

getReagentReagentIdentifier

public String getReagentReagentIdentifier(int screenIndex,
                                 int reagentIndex)

Specified by:: getReagentReagentIdentifier in interface MetadataRetrieve

getRectangleAnnotationRef

public String getRectangleAnnotationRef(int ROIIndex,
                               int shapeIndex,
                               int annotationRefIndex)

Specified by:: getRectangleAnnotationRef in interface MetadataRetrieve

getRectangleFillColor

public Color getRectangleFillColor(int ROIIndex,
                          int shapeIndex)

Specified by:: getRectangleFillColor in interface MetadataRetrieve

getRectangleFillRule

public FillRule getRectangleFillRule(int ROIIndex,
                            int shapeIndex)

Specified by:: getRectangleFillRule in interface MetadataRetrieve

getRectangleFontFamily

public FontFamily getRectangleFontFamily(int ROIIndex,
                                int shapeIndex)

Specified by:: getRectangleFontFamily in interface MetadataRetrieve

getRectangleFontSize

public Length getRectangleFontSize(int ROIIndex,
                          int shapeIndex)

Specified by:: getRectangleFontSize in interface MetadataRetrieve

getRectangleFontStyle

public FontStyle getRectangleFontStyle(int ROIIndex,
                              int shapeIndex)

Specified by:: getRectangleFontStyle in interface MetadataRetrieve

getRectangleID

public String getRectangleID(int ROIIndex,
                    int shapeIndex)

Specified by:: getRectangleID in interface MetadataRetrieve

getRectangleLineCap

public LineCap getRectangleLineCap(int ROIIndex,
                          int shapeIndex)

Specified by:: getRectangleLineCap in interface MetadataRetrieve

getRectangleLocked

public Boolean getRectangleLocked(int ROIIndex,
                         int shapeIndex)

Specified by:: getRectangleLocked in interface MetadataRetrieve

getRectangleStrokeColor

public Color getRectangleStrokeColor(int ROIIndex,
                            int shapeIndex)

Specified by:: getRectangleStrokeColor in interface MetadataRetrieve

getRectangleStrokeDashArray

public String getRectangleStrokeDashArray(int ROIIndex,
                                 int shapeIndex)

Specified by:: getRectangleStrokeDashArray in interface MetadataRetrieve

getRectangleStrokeWidth

public Length getRectangleStrokeWidth(int ROIIndex,
                             int shapeIndex)

Specified by:: getRectangleStrokeWidth in interface MetadataRetrieve

getRectangleText

public String getRectangleText(int ROIIndex,
                      int shapeIndex)

Specified by:: getRectangleText in interface MetadataRetrieve

getRectangleTheC

public NonNegativeInteger getRectangleTheC(int ROIIndex,
                                  int shapeIndex)

Specified by:: getRectangleTheC in interface MetadataRetrieve

getRectangleTheT

public NonNegativeInteger getRectangleTheT(int ROIIndex,
                                  int shapeIndex)

Specified by:: getRectangleTheT in interface MetadataRetrieve

getRectangleTheZ

public NonNegativeInteger getRectangleTheZ(int ROIIndex,
                                  int shapeIndex)

Specified by:: getRectangleTheZ in interface MetadataRetrieve

getRectangleTransform

public AffineTransform getRectangleTransform(int ROIIndex,
                                    int shapeIndex)

Specified by:: getRectangleTransform in interface MetadataRetrieve

getRectangleVisible

public Boolean getRectangleVisible(int ROIIndex,
                          int shapeIndex)

Specified by:: getRectangleVisible in interface MetadataRetrieve

getRectangleHeight

public Double getRectangleHeight(int ROIIndex,
                        int shapeIndex)

Specified by:: getRectangleHeight in interface MetadataRetrieve

getRectangleWidth

public Double getRectangleWidth(int ROIIndex,
                       int shapeIndex)

Specified by:: getRectangleWidth in interface MetadataRetrieve

getRectangleX

public Double getRectangleX(int ROIIndex,
                   int shapeIndex)

Specified by:: getRectangleX in interface MetadataRetrieve

getRectangleY

public Double getRectangleY(int ROIIndex,
                   int shapeIndex)

Specified by:: getRectangleY in interface MetadataRetrieve

getRightsRightsHeld
```
public String getRightsRightsHeld()
```
Specified by:

getRightsRightsHeld in interface MetadataRetrieve

getRightsRightsHolder
```
public String getRightsRightsHolder()
```
Specified by:

getRightsRightsHolder in interface MetadataRetrieve

getScreenAnnotationRef

public String getScreenAnnotationRef(int screenIndex,
                            int annotationRefIndex)

Specified by:: getScreenAnnotationRef in interface MetadataRetrieve

getScreenDescription
```
public String getScreenDescription(int screenIndex)
```
Specified by:

getScreenDescription in interface MetadataRetrieve

getScreenID
```
public String getScreenID(int screenIndex)
```
Specified by:

getScreenID in interface MetadataRetrieve

getScreenName
```
public String getScreenName(int screenIndex)
```
Specified by:

getScreenName in interface MetadataRetrieve

getScreenPlateRef

public String getScreenPlateRef(int screenIndex,
                       int plateRefIndex)

Specified by:: getScreenPlateRef in interface MetadataRetrieve

getScreenProtocolDescription
```
public String getScreenProtocolDescription(int screenIndex)
```
Specified by:

getScreenProtocolDescription in interface MetadataRetrieve

getScreenProtocolIdentifier
```
public String getScreenProtocolIdentifier(int screenIndex)
```
Specified by:

getScreenProtocolIdentifier in interface MetadataRetrieve

getScreenReagentSetDescription
```
public String getScreenReagentSetDescription(int screenIndex)
```
Specified by:

getScreenReagentSetDescription in interface MetadataRetrieve

getScreenReagentSetIdentifier
```
public String getScreenReagentSetIdentifier(int screenIndex)
```
Specified by:

getScreenReagentSetIdentifier in interface MetadataRetrieve

getScreenType
```
public String getScreenType(int screenIndex)
```
Specified by:

getScreenType in interface MetadataRetrieve

getStageLabelName
```
public String getStageLabelName(int imageIndex)
```
Specified by:

getStageLabelName in interface MetadataRetrieve

getStageLabelX
```
public Length getStageLabelX(int imageIndex)
```
Specified by:

getStageLabelX in interface MetadataRetrieve

getStageLabelY
```
public Length getStageLabelY(int imageIndex)
```
Specified by:

getStageLabelY in interface MetadataRetrieve

getStageLabelZ
```
public Length getStageLabelZ(int imageIndex)
```
Specified by:

getStageLabelZ in interface MetadataRetrieve

getTagAnnotationAnnotationRef

public String getTagAnnotationAnnotationRef(int tagAnnotationIndex,
                                   int annotationRefIndex)

Specified by:: getTagAnnotationAnnotationRef in interface MetadataRetrieve

getTagAnnotationAnnotator
```
public String getTagAnnotationAnnotator(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationAnnotator in interface MetadataRetrieve

getTagAnnotationDescription
```
public String getTagAnnotationDescription(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationDescription in interface MetadataRetrieve

getTagAnnotationID
```
public String getTagAnnotationID(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationID in interface MetadataRetrieve

getTagAnnotationNamespace
```
public String getTagAnnotationNamespace(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationNamespace in interface MetadataRetrieve

getTagAnnotationValue
```
public String getTagAnnotationValue(int tagAnnotationIndex)
```
Specified by:

getTagAnnotationValue in interface MetadataRetrieve

getTermAnnotationAnnotationRef

public String getTermAnnotationAnnotationRef(int termAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: getTermAnnotationAnnotationRef in interface MetadataRetrieve

getTermAnnotationAnnotator
```
public String getTermAnnotationAnnotator(int termAnnotationIndex)
```
Specified by:

getTermAnnotationAnnotator in interface MetadataRetrieve

getTermAnnotationDescription
```
public String getTermAnnotationDescription(int termAnnotationIndex)
```
Specified by:

getTermAnnotationDescription in interface MetadataRetrieve

getTermAnnotationID
```
public String getTermAnnotationID(int termAnnotationIndex)
```
Specified by:

getTermAnnotationID in interface MetadataRetrieve

getTermAnnotationNamespace
```
public String getTermAnnotationNamespace(int termAnnotationIndex)
```
Specified by:

getTermAnnotationNamespace in interface MetadataRetrieve

getTermAnnotationValue
```
public String getTermAnnotationValue(int termAnnotationIndex)
```
Specified by:

getTermAnnotationValue in interface MetadataRetrieve

getTiffDataFirstC

public NonNegativeInteger getTiffDataFirstC(int imageIndex,
                                   int tiffDataIndex)

Specified by:: getTiffDataFirstC in interface MetadataRetrieve

getTiffDataFirstT

public NonNegativeInteger getTiffDataFirstT(int imageIndex,
                                   int tiffDataIndex)

Specified by:: getTiffDataFirstT in interface MetadataRetrieve

getTiffDataFirstZ

public NonNegativeInteger getTiffDataFirstZ(int imageIndex,
                                   int tiffDataIndex)

Specified by:: getTiffDataFirstZ in interface MetadataRetrieve

getTiffDataIFD

public NonNegativeInteger getTiffDataIFD(int imageIndex,
                                int tiffDataIndex)

Specified by:: getTiffDataIFD in interface MetadataRetrieve

getTiffDataPlaneCount

public NonNegativeInteger getTiffDataPlaneCount(int imageIndex,
                                       int tiffDataIndex)

Specified by:: getTiffDataPlaneCount in interface MetadataRetrieve

getTimestampAnnotationAnnotationRef

public String getTimestampAnnotationAnnotationRef(int timestampAnnotationIndex,
                                         int annotationRefIndex)

Specified by:: getTimestampAnnotationAnnotationRef in interface MetadataRetrieve

getTimestampAnnotationAnnotator
```
public String getTimestampAnnotationAnnotator(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationAnnotator in interface MetadataRetrieve

getTimestampAnnotationDescription
```
public String getTimestampAnnotationDescription(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationDescription in interface MetadataRetrieve

getTimestampAnnotationID
```
public String getTimestampAnnotationID(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationID in interface MetadataRetrieve

getTimestampAnnotationNamespace
```
public String getTimestampAnnotationNamespace(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationNamespace in interface MetadataRetrieve

getTimestampAnnotationValue
```
public Timestamp getTimestampAnnotationValue(int timestampAnnotationIndex)
```
Specified by:

getTimestampAnnotationValue in interface MetadataRetrieve

getTransmittanceRangeCutIn

public Length getTransmittanceRangeCutIn(int instrumentIndex,
                                int filterIndex)

Specified by:: getTransmittanceRangeCutIn in interface MetadataRetrieve

getTransmittanceRangeCutInTolerance

public Length getTransmittanceRangeCutInTolerance(int instrumentIndex,
                                         int filterIndex)

Specified by:: getTransmittanceRangeCutInTolerance in interface MetadataRetrieve

getTransmittanceRangeCutOut

public Length getTransmittanceRangeCutOut(int instrumentIndex,
                                 int filterIndex)

Specified by:: getTransmittanceRangeCutOut in interface MetadataRetrieve

getTransmittanceRangeCutOutTolerance

public Length getTransmittanceRangeCutOutTolerance(int instrumentIndex,
                                          int filterIndex)

Specified by:: getTransmittanceRangeCutOutTolerance in interface MetadataRetrieve

getTransmittanceRangeTransmittance

public PercentFraction getTransmittanceRangeTransmittance(int instrumentIndex,
                                                 int filterIndex)

Specified by:: getTransmittanceRangeTransmittance in interface MetadataRetrieve

getUUIDFileName

public String getUUIDFileName(int imageIndex,
                     int tiffDataIndex)

Specified by:: getUUIDFileName in interface MetadataRetrieve

getWellAnnotationRef

public String getWellAnnotationRef(int plateIndex,
                          int wellIndex,
                          int annotationRefIndex)

Specified by:: getWellAnnotationRef in interface MetadataRetrieve

getWellColor

public Color getWellColor(int plateIndex,
                 int wellIndex)

Specified by:: getWellColor in interface MetadataRetrieve

getWellColumn

public NonNegativeInteger getWellColumn(int plateIndex,
                               int wellIndex)

Specified by:: getWellColumn in interface MetadataRetrieve

getWellExternalDescription

public String getWellExternalDescription(int plateIndex,
                                int wellIndex)

Specified by:: getWellExternalDescription in interface MetadataRetrieve

getWellExternalIdentifier

public String getWellExternalIdentifier(int plateIndex,
                               int wellIndex)

Specified by:: getWellExternalIdentifier in interface MetadataRetrieve

getWellID

public String getWellID(int plateIndex,
               int wellIndex)

Specified by:: getWellID in interface MetadataRetrieve

getWellReagentRef

public String getWellReagentRef(int plateIndex,
                       int wellIndex)

Specified by:: getWellReagentRef in interface MetadataRetrieve

getWellRow

public NonNegativeInteger getWellRow(int plateIndex,
                            int wellIndex)

Specified by:: getWellRow in interface MetadataRetrieve

getWellType

public String getWellType(int plateIndex,
                 int wellIndex)

Specified by:: getWellType in interface MetadataRetrieve

getWellSampleID

public String getWellSampleID(int plateIndex,
                     int wellIndex,
                     int wellSampleIndex)

Specified by:: getWellSampleID in interface MetadataRetrieve

getWellSampleImageRef

public String getWellSampleImageRef(int plateIndex,
                           int wellIndex,
                           int wellSampleIndex)

Specified by:: getWellSampleImageRef in interface MetadataRetrieve

getWellSampleIndex

public NonNegativeInteger getWellSampleIndex(int plateIndex,
                                    int wellIndex,
                                    int wellSampleIndex)

Specified by:: getWellSampleIndex in interface MetadataRetrieve

getWellSamplePositionX

public Length getWellSamplePositionX(int plateIndex,
                            int wellIndex,
                            int wellSampleIndex)

Specified by:: getWellSamplePositionX in interface MetadataRetrieve

getWellSamplePositionY

public Length getWellSamplePositionY(int plateIndex,
                            int wellIndex,
                            int wellSampleIndex)

Specified by:: getWellSamplePositionY in interface MetadataRetrieve

getWellSampleTimepoint

public Timestamp getWellSampleTimepoint(int plateIndex,
                               int wellIndex,
                               int wellSampleIndex)

Specified by:: getWellSampleTimepoint in interface MetadataRetrieve

getXMLAnnotationAnnotationRef

public String getXMLAnnotationAnnotationRef(int XMLAnnotationIndex,
                                   int annotationRefIndex)

Specified by:: getXMLAnnotationAnnotationRef in interface MetadataRetrieve

getXMLAnnotationAnnotator
```
public String getXMLAnnotationAnnotator(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationAnnotator in interface MetadataRetrieve

getXMLAnnotationDescription
```
public String getXMLAnnotationDescription(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationDescription in interface MetadataRetrieve

getXMLAnnotationID
```
public String getXMLAnnotationID(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationID in interface MetadataRetrieve

getXMLAnnotationNamespace
```
public String getXMLAnnotationNamespace(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationNamespace in interface MetadataRetrieve

getXMLAnnotationValue
```
public String getXMLAnnotationValue(int XMLAnnotationIndex)
```
Specified by:

getXMLAnnotationValue in interface MetadataRetrieve

setPixelsBinDataBigEndian

public void setPixelsBinDataBigEndian(Boolean bigEndian,
                             int imageIndex,
                             int binDataIndex)

Specified by:: setPixelsBinDataBigEndian in interface MetadataStore

setMaskBinData

public void setMaskBinData(byte[] binData,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setMaskBinData in interface MetadataStore

setUUID
```
public void setUUID(String uuid)
```
Sets the UUID associated with this collection of metadata.

Specified by:

setUUID in interface MetadataStore

setMapAnnotationValue
```
public void setMapAnnotationValue(List<MapPair> value,
                         int mapAnnotationIndex)
```
Sets the Map value associated with this annotation

Specified by:

setMapAnnotationValue in interface MetadataStore

setGenericExcitationSourceMap

public void setGenericExcitationSourceMap(List<MapPair> map,
                                 int instrumentIndex,
                                 int lightSourceIndex)

Sets the Map value associated with this generic light source

Specified by:: setGenericExcitationSourceMap in interface MetadataStore

setImagingEnvironmentMap
```
public void setImagingEnvironmentMap(List<MapPair> map,
                            int imageIndex)
```
Sets the Map value associated with this imaging environment

Specified by:

setImagingEnvironmentMap in interface MetadataStore

setArcAnnotationRef

public void setArcAnnotationRef(String annotation,
                       int instrumentIndex,
                       int lightSourceIndex,
                       int annotationRefIndex)

Specified by:: setArcAnnotationRef in interface MetadataStore

setArcID

public void setArcID(String id,
            int instrumentIndex,
            int lightSourceIndex)

Specified by:: setArcID in interface MetadataStore

setArcLotNumber

public void setArcLotNumber(String lotNumber,
                   int instrumentIndex,
                   int lightSourceIndex)

Specified by:: setArcLotNumber in interface MetadataStore

setArcManufacturer

public void setArcManufacturer(String manufacturer,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:: setArcManufacturer in interface MetadataStore

setArcModel

public void setArcModel(String model,
               int instrumentIndex,
               int lightSourceIndex)

Specified by:: setArcModel in interface MetadataStore

setArcPower

public void setArcPower(Power power,
               int instrumentIndex,
               int lightSourceIndex)

Specified by:: setArcPower in interface MetadataStore

setArcSerialNumber

public void setArcSerialNumber(String serialNumber,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:: setArcSerialNumber in interface MetadataStore

setArcType

public void setArcType(ArcType type,
              int instrumentIndex,
              int lightSourceIndex)

Specified by:: setArcType in interface MetadataStore

setBinaryFileFileName

public void setBinaryFileFileName(String fileName,
                         int fileAnnotationIndex)

Specified by:: setBinaryFileFileName in interface MetadataStore

setBinaryFileMIMEType

public void setBinaryFileMIMEType(String mimeType,
                         int fileAnnotationIndex)

Specified by:: setBinaryFileMIMEType in interface MetadataStore

setBinaryFileSize

public void setBinaryFileSize(NonNegativeLong size,
                     int fileAnnotationIndex)

Specified by:: setBinaryFileSize in interface MetadataStore

setBinaryOnlyMetadataFile
```
public void setBinaryOnlyMetadataFile(String metadataFile)
```
Specified by:

setBinaryOnlyMetadataFile in interface MetadataStore

setBinaryOnlyUUID
```
public void setBinaryOnlyUUID(String uuid)
```
Specified by:

setBinaryOnlyUUID in interface MetadataStore

setBooleanAnnotationAnnotationRef

public void setBooleanAnnotationAnnotationRef(String annotation,
                                     int booleanAnnotationIndex,
                                     int annotationRefIndex)

Specified by:: setBooleanAnnotationAnnotationRef in interface MetadataStore

setBooleanAnnotationAnnotator

public void setBooleanAnnotationAnnotator(String annotator,
                                 int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationAnnotator in interface MetadataStore

setBooleanAnnotationDescription

public void setBooleanAnnotationDescription(String description,
                                   int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationDescription in interface MetadataStore

setBooleanAnnotationID

public void setBooleanAnnotationID(String id,
                          int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationID in interface MetadataStore

setBooleanAnnotationNamespace

public void setBooleanAnnotationNamespace(String namespace,
                                 int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationNamespace in interface MetadataStore

setBooleanAnnotationValue

public void setBooleanAnnotationValue(Boolean value,
                             int booleanAnnotationIndex)

Specified by:: setBooleanAnnotationValue in interface MetadataStore

setChannelAcquisitionMode

public void setChannelAcquisitionMode(AcquisitionMode acquisitionMode,
                             int imageIndex,
                             int channelIndex)

Specified by:: setChannelAcquisitionMode in interface MetadataStore

setChannelAnnotationRef

public void setChannelAnnotationRef(String annotation,
                           int imageIndex,
                           int channelIndex,
                           int annotationRefIndex)

Specified by:: setChannelAnnotationRef in interface MetadataStore

setChannelColor

public void setChannelColor(Color color,
                   int imageIndex,
                   int channelIndex)

Specified by:: setChannelColor in interface MetadataStore

setChannelContrastMethod

public void setChannelContrastMethod(ContrastMethod contrastMethod,
                            int imageIndex,
                            int channelIndex)

Specified by:: setChannelContrastMethod in interface MetadataStore

setChannelEmissionWavelength

public void setChannelEmissionWavelength(Length emissionWavelength,
                                int imageIndex,
                                int channelIndex)

Specified by:: setChannelEmissionWavelength in interface MetadataStore

setChannelExcitationWavelength

public void setChannelExcitationWavelength(Length excitationWavelength,
                                  int imageIndex,
                                  int channelIndex)

Specified by:: setChannelExcitationWavelength in interface MetadataStore

setChannelFilterSetRef

public void setChannelFilterSetRef(String filterSet,
                          int imageIndex,
                          int channelIndex)

Specified by:: setChannelFilterSetRef in interface MetadataStore

setChannelFluor

public void setChannelFluor(String fluor,
                   int imageIndex,
                   int channelIndex)

Specified by:: setChannelFluor in interface MetadataStore

setChannelID

public void setChannelID(String id,
                int imageIndex,
                int channelIndex)

Specified by:: setChannelID in interface MetadataStore

setChannelIlluminationType

public void setChannelIlluminationType(IlluminationType illuminationType,
                              int imageIndex,
                              int channelIndex)

Specified by:: setChannelIlluminationType in interface MetadataStore

setChannelNDFilter

public void setChannelNDFilter(Double ndFilter,
                      int imageIndex,
                      int channelIndex)

Specified by:: setChannelNDFilter in interface MetadataStore

setChannelName

public void setChannelName(String name,
                  int imageIndex,
                  int channelIndex)

Specified by:: setChannelName in interface MetadataStore

setChannelPinholeSize

public void setChannelPinholeSize(Length pinholeSize,
                         int imageIndex,
                         int channelIndex)

Specified by:: setChannelPinholeSize in interface MetadataStore

setChannelPockelCellSetting

public void setChannelPockelCellSetting(Integer pockelCellSetting,
                               int imageIndex,
                               int channelIndex)

Specified by:: setChannelPockelCellSetting in interface MetadataStore

setChannelSamplesPerPixel

public void setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
                             int imageIndex,
                             int channelIndex)

Specified by:: setChannelSamplesPerPixel in interface MetadataStore

setCommentAnnotationAnnotationRef

public void setCommentAnnotationAnnotationRef(String annotation,
                                     int commentAnnotationIndex,
                                     int annotationRefIndex)

Specified by:: setCommentAnnotationAnnotationRef in interface MetadataStore

setCommentAnnotationAnnotator

public void setCommentAnnotationAnnotator(String annotator,
                                 int commentAnnotationIndex)

Specified by:: setCommentAnnotationAnnotator in interface MetadataStore

setCommentAnnotationDescription

public void setCommentAnnotationDescription(String description,
                                   int commentAnnotationIndex)

Specified by:: setCommentAnnotationDescription in interface MetadataStore

setCommentAnnotationID

public void setCommentAnnotationID(String id,
                          int commentAnnotationIndex)

Specified by:: setCommentAnnotationID in interface MetadataStore

setCommentAnnotationNamespace

public void setCommentAnnotationNamespace(String namespace,
                                 int commentAnnotationIndex)

Specified by:: setCommentAnnotationNamespace in interface MetadataStore

setCommentAnnotationValue

public void setCommentAnnotationValue(String value,
                             int commentAnnotationIndex)

Specified by:: setCommentAnnotationValue in interface MetadataStore

setDatasetAnnotationRef

public void setDatasetAnnotationRef(String annotation,
                           int datasetIndex,
                           int annotationRefIndex)

Specified by:: setDatasetAnnotationRef in interface MetadataStore

setDatasetDescription

public void setDatasetDescription(String description,
                         int datasetIndex)

Specified by:: setDatasetDescription in interface MetadataStore

setDatasetExperimenterGroupRef

public void setDatasetExperimenterGroupRef(String experimenterGroup,
                                  int datasetIndex)

Specified by:: setDatasetExperimenterGroupRef in interface MetadataStore

setDatasetExperimenterRef

public void setDatasetExperimenterRef(String experimenter,
                             int datasetIndex)

Specified by:: setDatasetExperimenterRef in interface MetadataStore

setDatasetID

public void setDatasetID(String id,
                int datasetIndex)

Specified by:: setDatasetID in interface MetadataStore

setDatasetImageRef

public void setDatasetImageRef(String image,
                      int datasetIndex,
                      int imageRefIndex)

Specified by:: setDatasetImageRef in interface MetadataStore

setDatasetName

public void setDatasetName(String name,
                  int datasetIndex)

Specified by:: setDatasetName in interface MetadataStore

setDetectorAmplificationGain

public void setDetectorAmplificationGain(Double amplificationGain,
                                int instrumentIndex,
                                int detectorIndex)

Specified by:: setDetectorAmplificationGain in interface MetadataStore

setDetectorAnnotationRef

public void setDetectorAnnotationRef(String annotation,
                            int instrumentIndex,
                            int detectorIndex,
                            int annotationRefIndex)

Specified by:: setDetectorAnnotationRef in interface MetadataStore

setDetectorGain

public void setDetectorGain(Double gain,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:: setDetectorGain in interface MetadataStore

setDetectorID

public void setDetectorID(String id,
                 int instrumentIndex,
                 int detectorIndex)

Specified by:: setDetectorID in interface MetadataStore

setDetectorLotNumber

public void setDetectorLotNumber(String lotNumber,
                        int instrumentIndex,
                        int detectorIndex)

Specified by:: setDetectorLotNumber in interface MetadataStore

setDetectorManufacturer

public void setDetectorManufacturer(String manufacturer,
                           int instrumentIndex,
                           int detectorIndex)

Specified by:: setDetectorManufacturer in interface MetadataStore

setDetectorModel

public void setDetectorModel(String model,
                    int instrumentIndex,
                    int detectorIndex)

Specified by:: setDetectorModel in interface MetadataStore

setDetectorOffset

public void setDetectorOffset(Double offset,
                     int instrumentIndex,
                     int detectorIndex)

Specified by:: setDetectorOffset in interface MetadataStore

setDetectorSerialNumber

public void setDetectorSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int detectorIndex)

Specified by:: setDetectorSerialNumber in interface MetadataStore

setDetectorType

public void setDetectorType(DetectorType type,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:: setDetectorType in interface MetadataStore

setDetectorVoltage

public void setDetectorVoltage(ElectricPotential voltage,
                      int instrumentIndex,
                      int detectorIndex)

Specified by:: setDetectorVoltage in interface MetadataStore

setDetectorZoom

public void setDetectorZoom(Double zoom,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:: setDetectorZoom in interface MetadataStore

setDetectorSettingsBinning

public void setDetectorSettingsBinning(Binning binning,
                              int imageIndex,
                              int channelIndex)

Specified by:: setDetectorSettingsBinning in interface MetadataStore

setDetectorSettingsGain

public void setDetectorSettingsGain(Double gain,
                           int imageIndex,
                           int channelIndex)

Specified by:: setDetectorSettingsGain in interface MetadataStore

setDetectorSettingsID

public void setDetectorSettingsID(String id,
                         int imageIndex,
                         int channelIndex)

Specified by:: setDetectorSettingsID in interface MetadataStore

setDetectorSettingsIntegration

public void setDetectorSettingsIntegration(PositiveInteger integration,
                                  int imageIndex,
                                  int channelIndex)

Specified by:: setDetectorSettingsIntegration in interface MetadataStore

setDetectorSettingsOffset

public void setDetectorSettingsOffset(Double offset,
                             int imageIndex,
                             int channelIndex)

Specified by:: setDetectorSettingsOffset in interface MetadataStore

setDetectorSettingsReadOutRate

public void setDetectorSettingsReadOutRate(Frequency readOutRate,
                                  int imageIndex,
                                  int channelIndex)

Specified by:: setDetectorSettingsReadOutRate in interface MetadataStore

setDetectorSettingsVoltage

public void setDetectorSettingsVoltage(ElectricPotential voltage,
                              int imageIndex,
                              int channelIndex)

Specified by:: setDetectorSettingsVoltage in interface MetadataStore

setDetectorSettingsZoom

public void setDetectorSettingsZoom(Double zoom,
                           int imageIndex,
                           int channelIndex)

Specified by:: setDetectorSettingsZoom in interface MetadataStore

setDichroicAnnotationRef

public void setDichroicAnnotationRef(String annotation,
                            int instrumentIndex,
                            int dichroicIndex,
                            int annotationRefIndex)

Specified by:: setDichroicAnnotationRef in interface MetadataStore

setDichroicID

public void setDichroicID(String id,
                 int instrumentIndex,
                 int dichroicIndex)

Specified by:: setDichroicID in interface MetadataStore

setDichroicLotNumber

public void setDichroicLotNumber(String lotNumber,
                        int instrumentIndex,
                        int dichroicIndex)

Specified by:: setDichroicLotNumber in interface MetadataStore

setDichroicManufacturer

public void setDichroicManufacturer(String manufacturer,
                           int instrumentIndex,
                           int dichroicIndex)

Specified by:: setDichroicManufacturer in interface MetadataStore

setDichroicModel

public void setDichroicModel(String model,
                    int instrumentIndex,
                    int dichroicIndex)

Specified by:: setDichroicModel in interface MetadataStore

setDichroicSerialNumber

public void setDichroicSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int dichroicIndex)

Specified by:: setDichroicSerialNumber in interface MetadataStore

setDoubleAnnotationAnnotationRef

public void setDoubleAnnotationAnnotationRef(String annotation,
                                    int doubleAnnotationIndex,
                                    int annotationRefIndex)

Specified by:: setDoubleAnnotationAnnotationRef in interface MetadataStore

setDoubleAnnotationAnnotator

public void setDoubleAnnotationAnnotator(String annotator,
                                int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationAnnotator in interface MetadataStore

setDoubleAnnotationDescription

public void setDoubleAnnotationDescription(String description,
                                  int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationDescription in interface MetadataStore

setDoubleAnnotationID

public void setDoubleAnnotationID(String id,
                         int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationID in interface MetadataStore

setDoubleAnnotationNamespace

public void setDoubleAnnotationNamespace(String namespace,
                                int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationNamespace in interface MetadataStore

setDoubleAnnotationValue

public void setDoubleAnnotationValue(Double value,
                            int doubleAnnotationIndex)

Specified by:: setDoubleAnnotationValue in interface MetadataStore

setEllipseAnnotationRef

public void setEllipseAnnotationRef(String annotation,
                           int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)

Specified by:: setEllipseAnnotationRef in interface MetadataStore

setEllipseFillColor

public void setEllipseFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setEllipseFillColor in interface MetadataStore

setEllipseFillRule

public void setEllipseFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setEllipseFillRule in interface MetadataStore

setEllipseFontFamily

public void setEllipseFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setEllipseFontFamily in interface MetadataStore

setEllipseFontSize

public void setEllipseFontSize(Length fontSize,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setEllipseFontSize in interface MetadataStore

setEllipseFontStyle

public void setEllipseFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setEllipseFontStyle in interface MetadataStore

setEllipseID

public void setEllipseID(String id,
                int ROIIndex,
                int shapeIndex)

Specified by:: setEllipseID in interface MetadataStore

setEllipseLineCap

public void setEllipseLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseLineCap in interface MetadataStore

setEllipseLocked

public void setEllipseLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setEllipseLocked in interface MetadataStore

setEllipseStrokeColor

public void setEllipseStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setEllipseStrokeColor in interface MetadataStore

setEllipseStrokeDashArray

public void setEllipseStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)

Specified by:: setEllipseStrokeDashArray in interface MetadataStore

setEllipseStrokeWidth

public void setEllipseStrokeWidth(Length strokeWidth,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setEllipseStrokeWidth in interface MetadataStore

setEllipseText

public void setEllipseText(String text,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseText in interface MetadataStore

setEllipseTheC

public void setEllipseTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseTheC in interface MetadataStore

setEllipseTheT

public void setEllipseTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseTheT in interface MetadataStore

setEllipseTheZ

public void setEllipseTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setEllipseTheZ in interface MetadataStore

setEllipseTransform

public void setEllipseTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setEllipseTransform in interface MetadataStore

setEllipseVisible

public void setEllipseVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseVisible in interface MetadataStore

setEllipseRadiusX

public void setEllipseRadiusX(Double radiusX,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseRadiusX in interface MetadataStore

setEllipseRadiusY

public void setEllipseRadiusY(Double radiusY,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setEllipseRadiusY in interface MetadataStore

setEllipseX

public void setEllipseX(Double x,
               int ROIIndex,
               int shapeIndex)

Specified by:: setEllipseX in interface MetadataStore

setEllipseY

public void setEllipseY(Double y,
               int ROIIndex,
               int shapeIndex)

Specified by:: setEllipseY in interface MetadataStore

setExperimentDescription

public void setExperimentDescription(String description,
                            int experimentIndex)

Specified by:: setExperimentDescription in interface MetadataStore

setExperimentExperimenterRef

public void setExperimentExperimenterRef(String experimenter,
                                int experimentIndex)

Specified by:: setExperimentExperimenterRef in interface MetadataStore

setExperimentID

public void setExperimentID(String id,
                   int experimentIndex)

Specified by:: setExperimentID in interface MetadataStore

setExperimentType

public void setExperimentType(ExperimentType type,
                     int experimentIndex)

Specified by:: setExperimentType in interface MetadataStore

setExperimenterAnnotationRef

public void setExperimenterAnnotationRef(String annotation,
                                int experimenterIndex,
                                int annotationRefIndex)

Specified by:: setExperimenterAnnotationRef in interface MetadataStore

setExperimenterEmail

public void setExperimenterEmail(String email,
                        int experimenterIndex)

Specified by:: setExperimenterEmail in interface MetadataStore

setExperimenterFirstName

public void setExperimenterFirstName(String firstName,
                            int experimenterIndex)

Specified by:: setExperimenterFirstName in interface MetadataStore

setExperimenterID

public void setExperimenterID(String id,
                     int experimenterIndex)

Specified by:: setExperimenterID in interface MetadataStore

setExperimenterInstitution

public void setExperimenterInstitution(String institution,
                              int experimenterIndex)

Specified by:: setExperimenterInstitution in interface MetadataStore

setExperimenterLastName

public void setExperimenterLastName(String lastName,
                           int experimenterIndex)

Specified by:: setExperimenterLastName in interface MetadataStore

setExperimenterMiddleName

public void setExperimenterMiddleName(String middleName,
                             int experimenterIndex)

Specified by:: setExperimenterMiddleName in interface MetadataStore

setExperimenterUserName

public void setExperimenterUserName(String userName,
                           int experimenterIndex)

Specified by:: setExperimenterUserName in interface MetadataStore

setExperimenterGroupAnnotationRef

public void setExperimenterGroupAnnotationRef(String annotation,
                                     int experimenterGroupIndex,
                                     int annotationRefIndex)

Specified by:: setExperimenterGroupAnnotationRef in interface MetadataStore

setExperimenterGroupDescription

public void setExperimenterGroupDescription(String description,
                                   int experimenterGroupIndex)

Specified by:: setExperimenterGroupDescription in interface MetadataStore

setExperimenterGroupExperimenterRef

public void setExperimenterGroupExperimenterRef(String experimenter,
                                       int experimenterGroupIndex,
                                       int experimenterRefIndex)

Specified by:: setExperimenterGroupExperimenterRef in interface MetadataStore

setExperimenterGroupID

public void setExperimenterGroupID(String id,
                          int experimenterGroupIndex)

Specified by:: setExperimenterGroupID in interface MetadataStore

setExperimenterGroupLeader

public void setExperimenterGroupLeader(String leader,
                              int experimenterGroupIndex,
                              int leaderIndex)

Specified by:: setExperimenterGroupLeader in interface MetadataStore

setExperimenterGroupName

public void setExperimenterGroupName(String name,
                            int experimenterGroupIndex)

Specified by:: setExperimenterGroupName in interface MetadataStore

setFilamentAnnotationRef

public void setFilamentAnnotationRef(String annotation,
                            int instrumentIndex,
                            int lightSourceIndex,
                            int annotationRefIndex)

Specified by:: setFilamentAnnotationRef in interface MetadataStore

setFilamentID

public void setFilamentID(String id,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:: setFilamentID in interface MetadataStore

setFilamentLotNumber

public void setFilamentLotNumber(String lotNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:: setFilamentLotNumber in interface MetadataStore

setFilamentManufacturer

public void setFilamentManufacturer(String manufacturer,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:: setFilamentManufacturer in interface MetadataStore

setFilamentModel

public void setFilamentModel(String model,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:: setFilamentModel in interface MetadataStore

setFilamentPower

public void setFilamentPower(Power power,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:: setFilamentPower in interface MetadataStore

setFilamentSerialNumber

public void setFilamentSerialNumber(String serialNumber,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:: setFilamentSerialNumber in interface MetadataStore

setFilamentType

public void setFilamentType(FilamentType type,
                   int instrumentIndex,
                   int lightSourceIndex)

Specified by:: setFilamentType in interface MetadataStore

setFileAnnotationAnnotationRef

public void setFileAnnotationAnnotationRef(String annotation,
                                  int fileAnnotationIndex,
                                  int annotationRefIndex)

Specified by:: setFileAnnotationAnnotationRef in interface MetadataStore

setFileAnnotationAnnotator

public void setFileAnnotationAnnotator(String annotator,
                              int fileAnnotationIndex)

Specified by:: setFileAnnotationAnnotator in interface MetadataStore

setFileAnnotationDescription

public void setFileAnnotationDescription(String description,
                                int fileAnnotationIndex)

Specified by:: setFileAnnotationDescription in interface MetadataStore

setFileAnnotationID

public void setFileAnnotationID(String id,
                       int fileAnnotationIndex)

Specified by:: setFileAnnotationID in interface MetadataStore

setFileAnnotationNamespace

public void setFileAnnotationNamespace(String namespace,
                              int fileAnnotationIndex)

Specified by:: setFileAnnotationNamespace in interface MetadataStore

setFilterAnnotationRef

public void setFilterAnnotationRef(String annotation,
                          int instrumentIndex,
                          int filterIndex,
                          int annotationRefIndex)

Specified by:: setFilterAnnotationRef in interface MetadataStore

setFilterFilterWheel

public void setFilterFilterWheel(String filterWheel,
                        int instrumentIndex,
                        int filterIndex)

Specified by:: setFilterFilterWheel in interface MetadataStore

setFilterID

public void setFilterID(String id,
               int instrumentIndex,
               int filterIndex)

Specified by:: setFilterID in interface MetadataStore

setFilterLotNumber

public void setFilterLotNumber(String lotNumber,
                      int instrumentIndex,
                      int filterIndex)

Specified by:: setFilterLotNumber in interface MetadataStore

setFilterManufacturer

public void setFilterManufacturer(String manufacturer,
                         int instrumentIndex,
                         int filterIndex)

Specified by:: setFilterManufacturer in interface MetadataStore

setFilterModel

public void setFilterModel(String model,
                  int instrumentIndex,
                  int filterIndex)

Specified by:: setFilterModel in interface MetadataStore

setFilterSerialNumber

public void setFilterSerialNumber(String serialNumber,
                         int instrumentIndex,
                         int filterIndex)

Specified by:: setFilterSerialNumber in interface MetadataStore

setFilterType

public void setFilterType(FilterType type,
                 int instrumentIndex,
                 int filterIndex)

Specified by:: setFilterType in interface MetadataStore

setFilterSetDichroicRef

public void setFilterSetDichroicRef(String dichroic,
                           int instrumentIndex,
                           int filterSetIndex)

Specified by:: setFilterSetDichroicRef in interface MetadataStore

setFilterSetEmissionFilterRef

public void setFilterSetEmissionFilterRef(String emissionFilter,
                                 int instrumentIndex,
                                 int filterSetIndex,
                                 int emissionFilterRefIndex)

Specified by:: setFilterSetEmissionFilterRef in interface MetadataStore

setFilterSetExcitationFilterRef

public void setFilterSetExcitationFilterRef(String excitationFilter,
                                   int instrumentIndex,
                                   int filterSetIndex,
                                   int excitationFilterRefIndex)

Specified by:: setFilterSetExcitationFilterRef in interface MetadataStore

setFilterSetID

public void setFilterSetID(String id,
                  int instrumentIndex,
                  int filterSetIndex)

Specified by:: setFilterSetID in interface MetadataStore

setFilterSetLotNumber

public void setFilterSetLotNumber(String lotNumber,
                         int instrumentIndex,
                         int filterSetIndex)

Specified by:: setFilterSetLotNumber in interface MetadataStore

setFilterSetManufacturer

public void setFilterSetManufacturer(String manufacturer,
                            int instrumentIndex,
                            int filterSetIndex)

Specified by:: setFilterSetManufacturer in interface MetadataStore

setFilterSetModel

public void setFilterSetModel(String model,
                     int instrumentIndex,
                     int filterSetIndex)

Specified by:: setFilterSetModel in interface MetadataStore

setFilterSetSerialNumber

public void setFilterSetSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int filterSetIndex)

Specified by:: setFilterSetSerialNumber in interface MetadataStore

setGenericExcitationSourceAnnotationRef

public void setGenericExcitationSourceAnnotationRef(String annotation,
                                           int instrumentIndex,
                                           int lightSourceIndex,
                                           int annotationRefIndex)

Specified by:: setGenericExcitationSourceAnnotationRef in interface MetadataStore

setGenericExcitationSourceID

public void setGenericExcitationSourceID(String id,
                                int instrumentIndex,
                                int lightSourceIndex)

Specified by:: setGenericExcitationSourceID in interface MetadataStore

setGenericExcitationSourceLotNumber

public void setGenericExcitationSourceLotNumber(String lotNumber,
                                       int instrumentIndex,
                                       int lightSourceIndex)

Specified by:: setGenericExcitationSourceLotNumber in interface MetadataStore

setGenericExcitationSourceManufacturer

public void setGenericExcitationSourceManufacturer(String manufacturer,
                                          int instrumentIndex,
                                          int lightSourceIndex)

Specified by:: setGenericExcitationSourceManufacturer in interface MetadataStore

setGenericExcitationSourceModel

public void setGenericExcitationSourceModel(String model,
                                   int instrumentIndex,
                                   int lightSourceIndex)

Specified by:: setGenericExcitationSourceModel in interface MetadataStore

setGenericExcitationSourcePower

public void setGenericExcitationSourcePower(Power power,
                                   int instrumentIndex,
                                   int lightSourceIndex)

Specified by:: setGenericExcitationSourcePower in interface MetadataStore

setGenericExcitationSourceSerialNumber

public void setGenericExcitationSourceSerialNumber(String serialNumber,
                                          int instrumentIndex,
                                          int lightSourceIndex)

Specified by:: setGenericExcitationSourceSerialNumber in interface MetadataStore

setImageAcquisitionDate

public void setImageAcquisitionDate(Timestamp acquisitionDate,
                           int imageIndex)

Specified by:: setImageAcquisitionDate in interface MetadataStore

setImageAnnotationRef

public void setImageAnnotationRef(String annotation,
                         int imageIndex,
                         int annotationRefIndex)

Specified by:: setImageAnnotationRef in interface MetadataStore

setImageDescription

public void setImageDescription(String description,
                       int imageIndex)

Specified by:: setImageDescription in interface MetadataStore

setImageExperimentRef

public void setImageExperimentRef(String experiment,
                         int imageIndex)

Specified by:: setImageExperimentRef in interface MetadataStore

setImageExperimenterGroupRef

public void setImageExperimenterGroupRef(String experimenterGroup,
                                int imageIndex)

Specified by:: setImageExperimenterGroupRef in interface MetadataStore

setImageExperimenterRef

public void setImageExperimenterRef(String experimenter,
                           int imageIndex)

Specified by:: setImageExperimenterRef in interface MetadataStore

setImageID

public void setImageID(String id,
              int imageIndex)

Specified by:: setImageID in interface MetadataStore

setImageInstrumentRef

public void setImageInstrumentRef(String instrument,
                         int imageIndex)

Specified by:: setImageInstrumentRef in interface MetadataStore

setImageMicrobeamManipulationRef

public void setImageMicrobeamManipulationRef(String microbeamManipulation,
                                    int imageIndex,
                                    int microbeamManipulationRefIndex)

Specified by:: setImageMicrobeamManipulationRef in interface MetadataStore

setImageName

public void setImageName(String name,
                int imageIndex)

Specified by:: setImageName in interface MetadataStore

setImageROIRef

public void setImageROIRef(String roi,
                  int imageIndex,
                  int ROIRefIndex)

Specified by:: setImageROIRef in interface MetadataStore

setImagingEnvironmentAirPressure

public void setImagingEnvironmentAirPressure(Pressure airPressure,
                                    int imageIndex)

Specified by:: setImagingEnvironmentAirPressure in interface MetadataStore

setImagingEnvironmentCO2Percent

public void setImagingEnvironmentCO2Percent(PercentFraction co2Percent,
                                   int imageIndex)

Specified by:: setImagingEnvironmentCO2Percent in interface MetadataStore

setImagingEnvironmentHumidity

public void setImagingEnvironmentHumidity(PercentFraction humidity,
                                 int imageIndex)

Specified by:: setImagingEnvironmentHumidity in interface MetadataStore

setImagingEnvironmentTemperature

public void setImagingEnvironmentTemperature(Temperature temperature,
                                    int imageIndex)

Specified by:: setImagingEnvironmentTemperature in interface MetadataStore

setInstrumentAnnotationRef

public void setInstrumentAnnotationRef(String annotation,
                              int instrumentIndex,
                              int annotationRefIndex)

Specified by:: setInstrumentAnnotationRef in interface MetadataStore

setInstrumentID

public void setInstrumentID(String id,
                   int instrumentIndex)

Specified by:: setInstrumentID in interface MetadataStore

setLabelAnnotationRef

public void setLabelAnnotationRef(String annotation,
                         int ROIIndex,
                         int shapeIndex,
                         int annotationRefIndex)

Specified by:: setLabelAnnotationRef in interface MetadataStore

setLabelFillColor

public void setLabelFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setLabelFillColor in interface MetadataStore

setLabelFillRule

public void setLabelFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLabelFillRule in interface MetadataStore

setLabelFontFamily

public void setLabelFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setLabelFontFamily in interface MetadataStore

setLabelFontSize

public void setLabelFontSize(Length fontSize,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLabelFontSize in interface MetadataStore

setLabelFontStyle

public void setLabelFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setLabelFontStyle in interface MetadataStore

setLabelID

public void setLabelID(String id,
              int ROIIndex,
              int shapeIndex)

Specified by:: setLabelID in interface MetadataStore

setLabelLineCap

public void setLabelLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setLabelLineCap in interface MetadataStore

setLabelLocked

public void setLabelLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setLabelLocked in interface MetadataStore

setLabelStrokeColor

public void setLabelStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setLabelStrokeColor in interface MetadataStore

setLabelStrokeDashArray

public void setLabelStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)

Specified by:: setLabelStrokeDashArray in interface MetadataStore

setLabelStrokeWidth

public void setLabelStrokeWidth(Length strokeWidth,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setLabelStrokeWidth in interface MetadataStore

setLabelText

public void setLabelText(String text,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelText in interface MetadataStore

setLabelTheC

public void setLabelTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelTheC in interface MetadataStore

setLabelTheT

public void setLabelTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelTheT in interface MetadataStore

setLabelTheZ

public void setLabelTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)

Specified by:: setLabelTheZ in interface MetadataStore

setLabelTransform

public void setLabelTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setLabelTransform in interface MetadataStore

setLabelVisible

public void setLabelVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setLabelVisible in interface MetadataStore

setLabelX

public void setLabelX(Double x,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLabelX in interface MetadataStore

setLabelY

public void setLabelY(Double y,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLabelY in interface MetadataStore

setLaserAnnotationRef

public void setLaserAnnotationRef(String annotation,
                         int instrumentIndex,
                         int lightSourceIndex,
                         int annotationRefIndex)

Specified by:: setLaserAnnotationRef in interface MetadataStore

setLaserID

public void setLaserID(String id,
              int instrumentIndex,
              int lightSourceIndex)

Specified by:: setLaserID in interface MetadataStore

setLaserLotNumber

public void setLaserLotNumber(String lotNumber,
                     int instrumentIndex,
                     int lightSourceIndex)

Specified by:: setLaserLotNumber in interface MetadataStore

setLaserManufacturer

public void setLaserManufacturer(String manufacturer,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:: setLaserManufacturer in interface MetadataStore

setLaserModel

public void setLaserModel(String model,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:: setLaserModel in interface MetadataStore

setLaserPower

public void setLaserPower(Power power,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:: setLaserPower in interface MetadataStore

setLaserSerialNumber

public void setLaserSerialNumber(String serialNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:: setLaserSerialNumber in interface MetadataStore

setLaserFrequencyMultiplication

public void setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
                                   int instrumentIndex,
                                   int lightSourceIndex)

Specified by:: setLaserFrequencyMultiplication in interface MetadataStore

setLaserLaserMedium

public void setLaserLaserMedium(LaserMedium laserMedium,
                       int instrumentIndex,
                       int lightSourceIndex)

Specified by:: setLaserLaserMedium in interface MetadataStore

setLaserPockelCell

public void setLaserPockelCell(Boolean pockelCell,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:: setLaserPockelCell in interface MetadataStore

setLaserPulse

public void setLaserPulse(Pulse pulse,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:: setLaserPulse in interface MetadataStore

setLaserPump

public void setLaserPump(String pump,
                int instrumentIndex,
                int lightSourceIndex)

Specified by:: setLaserPump in interface MetadataStore

setLaserRepetitionRate

public void setLaserRepetitionRate(Frequency repetitionRate,
                          int instrumentIndex,
                          int lightSourceIndex)

Specified by:: setLaserRepetitionRate in interface MetadataStore

setLaserTuneable

public void setLaserTuneable(Boolean tuneable,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:: setLaserTuneable in interface MetadataStore

setLaserType

public void setLaserType(LaserType type,
                int instrumentIndex,
                int lightSourceIndex)

Specified by:: setLaserType in interface MetadataStore

setLaserWavelength

public void setLaserWavelength(Length wavelength,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:: setLaserWavelength in interface MetadataStore

setLightEmittingDiodeAnnotationRef

public void setLightEmittingDiodeAnnotationRef(String annotation,
                                      int instrumentIndex,
                                      int lightSourceIndex,
                                      int annotationRefIndex)

Specified by:: setLightEmittingDiodeAnnotationRef in interface MetadataStore

setLightEmittingDiodeID

public void setLightEmittingDiodeID(String id,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:: setLightEmittingDiodeID in interface MetadataStore

setLightEmittingDiodeLotNumber

public void setLightEmittingDiodeLotNumber(String lotNumber,
                                  int instrumentIndex,
                                  int lightSourceIndex)

Specified by:: setLightEmittingDiodeLotNumber in interface MetadataStore

setLightEmittingDiodeManufacturer

public void setLightEmittingDiodeManufacturer(String manufacturer,
                                     int instrumentIndex,
                                     int lightSourceIndex)

Specified by:: setLightEmittingDiodeManufacturer in interface MetadataStore

setLightEmittingDiodeModel

public void setLightEmittingDiodeModel(String model,
                              int instrumentIndex,
                              int lightSourceIndex)

Specified by:: setLightEmittingDiodeModel in interface MetadataStore

setLightEmittingDiodePower

public void setLightEmittingDiodePower(Power power,
                              int instrumentIndex,
                              int lightSourceIndex)

Specified by:: setLightEmittingDiodePower in interface MetadataStore

setLightEmittingDiodeSerialNumber

public void setLightEmittingDiodeSerialNumber(String serialNumber,
                                     int instrumentIndex,
                                     int lightSourceIndex)

Specified by:: setLightEmittingDiodeSerialNumber in interface MetadataStore

setLightPathAnnotationRef

public void setLightPathAnnotationRef(String annotation,
                             int imageIndex,
                             int channelIndex,
                             int annotationRefIndex)

Specified by:: setLightPathAnnotationRef in interface MetadataStore

setLightPathDichroicRef

public void setLightPathDichroicRef(String dichroic,
                           int imageIndex,
                           int channelIndex)

Specified by:: setLightPathDichroicRef in interface MetadataStore

setLightPathEmissionFilterRef

public void setLightPathEmissionFilterRef(String emissionFilter,
                                 int imageIndex,
                                 int channelIndex,
                                 int emissionFilterRefIndex)

Specified by:: setLightPathEmissionFilterRef in interface MetadataStore

setLightPathExcitationFilterRef

public void setLightPathExcitationFilterRef(String excitationFilter,
                                   int imageIndex,
                                   int channelIndex,
                                   int excitationFilterRefIndex)

Specified by:: setLightPathExcitationFilterRef in interface MetadataStore

setChannelLightSourceSettingsAttenuation

public void setChannelLightSourceSettingsAttenuation(PercentFraction attenuation,
                                            int imageIndex,
                                            int channelIndex)

Specified by:: setChannelLightSourceSettingsAttenuation in interface MetadataStore

setMicrobeamManipulationLightSourceSettingsAttenuation

public void setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation,
                                                          int experimentIndex,
                                                          int microbeamManipulationIndex,
                                                          int lightSourceSettingsIndex)

Specified by:: setMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataStore

setChannelLightSourceSettingsID

public void setChannelLightSourceSettingsID(String id,
                                   int imageIndex,
                                   int channelIndex)

Specified by:: setChannelLightSourceSettingsID in interface MetadataStore

setMicrobeamManipulationLightSourceSettingsID

public void setMicrobeamManipulationLightSourceSettingsID(String id,
                                                 int experimentIndex,
                                                 int microbeamManipulationIndex,
                                                 int lightSourceSettingsIndex)

Specified by:: setMicrobeamManipulationLightSourceSettingsID in interface MetadataStore

setChannelLightSourceSettingsWavelength

public void setChannelLightSourceSettingsWavelength(Length wavelength,
                                           int imageIndex,
                                           int channelIndex)

Specified by:: setChannelLightSourceSettingsWavelength in interface MetadataStore

setMicrobeamManipulationLightSourceSettingsWavelength

public void setMicrobeamManipulationLightSourceSettingsWavelength(Length wavelength,
                                                         int experimentIndex,
                                                         int microbeamManipulationIndex,
                                                         int lightSourceSettingsIndex)

Specified by:: setMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataStore

setLineAnnotationRef

public void setLineAnnotationRef(String annotation,
                        int ROIIndex,
                        int shapeIndex,
                        int annotationRefIndex)

Specified by:: setLineAnnotationRef in interface MetadataStore

setLineFillColor

public void setLineFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLineFillColor in interface MetadataStore

setLineFillRule

public void setLineFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setLineFillRule in interface MetadataStore

setLineFontFamily

public void setLineFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setLineFontFamily in interface MetadataStore

setLineFontSize

public void setLineFontSize(Length fontSize,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setLineFontSize in interface MetadataStore

setLineFontStyle

public void setLineFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLineFontStyle in interface MetadataStore

setLineID

public void setLineID(String id,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLineID in interface MetadataStore

setLineLineCap

public void setLineLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setLineLineCap in interface MetadataStore

setLineLocked

public void setLineLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)

Specified by:: setLineLocked in interface MetadataStore

setLineStrokeColor

public void setLineStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setLineStrokeColor in interface MetadataStore

setLineStrokeDashArray

public void setLineStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)

Specified by:: setLineStrokeDashArray in interface MetadataStore

setLineStrokeWidth

public void setLineStrokeWidth(Length strokeWidth,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setLineStrokeWidth in interface MetadataStore

setLineText

public void setLineText(String text,
               int ROIIndex,
               int shapeIndex)

Specified by:: setLineText in interface MetadataStore

setLineTheC

public void setLineTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)

Specified by:: setLineTheC in interface MetadataStore

setLineTheT

public void setLineTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)

Specified by:: setLineTheT in interface MetadataStore

setLineTheZ

public void setLineTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)

Specified by:: setLineTheZ in interface MetadataStore

setLineTransform

public void setLineTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLineTransform in interface MetadataStore

setLineVisible

public void setLineVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setLineVisible in interface MetadataStore

setLineMarkerEnd

public void setLineMarkerEnd(Marker markerEnd,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setLineMarkerEnd in interface MetadataStore

setLineMarkerStart

public void setLineMarkerStart(Marker markerStart,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setLineMarkerStart in interface MetadataStore

setLineX1

public void setLineX1(Double x1,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLineX1 in interface MetadataStore

setLineX2

public void setLineX2(Double x2,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLineX2 in interface MetadataStore

setLineY1

public void setLineY1(Double y1,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLineY1 in interface MetadataStore

setLineY2

public void setLineY2(Double y2,
             int ROIIndex,
             int shapeIndex)

Specified by:: setLineY2 in interface MetadataStore

setListAnnotationAnnotationRef

public void setListAnnotationAnnotationRef(String annotation,
                                  int listAnnotationIndex,
                                  int annotationRefIndex)

Specified by:: setListAnnotationAnnotationRef in interface MetadataStore

setListAnnotationAnnotator

public void setListAnnotationAnnotator(String annotator,
                              int listAnnotationIndex)

Specified by:: setListAnnotationAnnotator in interface MetadataStore

setListAnnotationDescription

public void setListAnnotationDescription(String description,
                                int listAnnotationIndex)

Specified by:: setListAnnotationDescription in interface MetadataStore

setListAnnotationID

public void setListAnnotationID(String id,
                       int listAnnotationIndex)

Specified by:: setListAnnotationID in interface MetadataStore

setListAnnotationNamespace

public void setListAnnotationNamespace(String namespace,
                              int listAnnotationIndex)

Specified by:: setListAnnotationNamespace in interface MetadataStore

setLongAnnotationAnnotationRef

public void setLongAnnotationAnnotationRef(String annotation,
                                  int longAnnotationIndex,
                                  int annotationRefIndex)

Specified by:: setLongAnnotationAnnotationRef in interface MetadataStore

setLongAnnotationAnnotator

public void setLongAnnotationAnnotator(String annotator,
                              int longAnnotationIndex)

Specified by:: setLongAnnotationAnnotator in interface MetadataStore

setLongAnnotationDescription

public void setLongAnnotationDescription(String description,
                                int longAnnotationIndex)

Specified by:: setLongAnnotationDescription in interface MetadataStore

setLongAnnotationID

public void setLongAnnotationID(String id,
                       int longAnnotationIndex)

Specified by:: setLongAnnotationID in interface MetadataStore

setLongAnnotationNamespace

public void setLongAnnotationNamespace(String namespace,
                              int longAnnotationIndex)

Specified by:: setLongAnnotationNamespace in interface MetadataStore

setLongAnnotationValue

public void setLongAnnotationValue(Long value,
                          int longAnnotationIndex)

Specified by:: setLongAnnotationValue in interface MetadataStore

setMapAnnotationAnnotationRef

public void setMapAnnotationAnnotationRef(String annotation,
                                 int mapAnnotationIndex,
                                 int annotationRefIndex)

Specified by:: setMapAnnotationAnnotationRef in interface MetadataStore

setMapAnnotationAnnotator

public void setMapAnnotationAnnotator(String annotator,
                             int mapAnnotationIndex)

Specified by:: setMapAnnotationAnnotator in interface MetadataStore

setMapAnnotationDescription

public void setMapAnnotationDescription(String description,
                               int mapAnnotationIndex)

Specified by:: setMapAnnotationDescription in interface MetadataStore

setMapAnnotationID

public void setMapAnnotationID(String id,
                      int mapAnnotationIndex)

Specified by:: setMapAnnotationID in interface MetadataStore

setMapAnnotationNamespace

public void setMapAnnotationNamespace(String namespace,
                             int mapAnnotationIndex)

Specified by:: setMapAnnotationNamespace in interface MetadataStore

setMaskAnnotationRef

public void setMaskAnnotationRef(String annotation,
                        int ROIIndex,
                        int shapeIndex,
                        int annotationRefIndex)

Specified by:: setMaskAnnotationRef in interface MetadataStore

setMaskFillColor

public void setMaskFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setMaskFillColor in interface MetadataStore

setMaskFillRule

public void setMaskFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setMaskFillRule in interface MetadataStore

setMaskFontFamily

public void setMaskFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setMaskFontFamily in interface MetadataStore

setMaskFontSize

public void setMaskFontSize(Length fontSize,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setMaskFontSize in interface MetadataStore

setMaskFontStyle

public void setMaskFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setMaskFontStyle in interface MetadataStore

setMaskID

public void setMaskID(String id,
             int ROIIndex,
             int shapeIndex)

Specified by:: setMaskID in interface MetadataStore

setMaskLineCap

public void setMaskLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setMaskLineCap in interface MetadataStore

setMaskLocked

public void setMaskLocked(Boolean locked,
                 int ROIIndex,
                 int shapeIndex)

Specified by:: setMaskLocked in interface MetadataStore

setMaskStrokeColor

public void setMaskStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setMaskStrokeColor in interface MetadataStore

setMaskStrokeDashArray

public void setMaskStrokeDashArray(String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)

Specified by:: setMaskStrokeDashArray in interface MetadataStore

setMaskStrokeWidth

public void setMaskStrokeWidth(Length strokeWidth,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setMaskStrokeWidth in interface MetadataStore

setMaskText

public void setMaskText(String text,
               int ROIIndex,
               int shapeIndex)

Specified by:: setMaskText in interface MetadataStore

setMaskTheC

public void setMaskTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)

Specified by:: setMaskTheC in interface MetadataStore

setMaskTheT

public void setMaskTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)

Specified by:: setMaskTheT in interface MetadataStore

setMaskTheZ

public void setMaskTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)

Specified by:: setMaskTheZ in interface MetadataStore

setMaskTransform

public void setMaskTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setMaskTransform in interface MetadataStore

setMaskVisible

public void setMaskVisible(Boolean visible,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setMaskVisible in interface MetadataStore

setMaskHeight

public void setMaskHeight(Double height,
                 int ROIIndex,
                 int shapeIndex)

Specified by:: setMaskHeight in interface MetadataStore

setMaskWidth

public void setMaskWidth(Double width,
                int ROIIndex,
                int shapeIndex)

Specified by:: setMaskWidth in interface MetadataStore

setMaskX

public void setMaskX(Double x,
            int ROIIndex,
            int shapeIndex)

Specified by:: setMaskX in interface MetadataStore

setMaskY

public void setMaskY(Double y,
            int ROIIndex,
            int shapeIndex)

Specified by:: setMaskY in interface MetadataStore

setMicrobeamManipulationDescription

public void setMicrobeamManipulationDescription(String description,
                                       int experimentIndex,
                                       int microbeamManipulationIndex)

Specified by:: setMicrobeamManipulationDescription in interface MetadataStore

setMicrobeamManipulationExperimenterRef

public void setMicrobeamManipulationExperimenterRef(String experimenter,
                                           int experimentIndex,
                                           int microbeamManipulationIndex)

Specified by:: setMicrobeamManipulationExperimenterRef in interface MetadataStore

setMicrobeamManipulationID

public void setMicrobeamManipulationID(String id,
                              int experimentIndex,
                              int microbeamManipulationIndex)

Specified by:: setMicrobeamManipulationID in interface MetadataStore

setMicrobeamManipulationROIRef

public void setMicrobeamManipulationROIRef(String roi,
                                  int experimentIndex,
                                  int microbeamManipulationIndex,
                                  int ROIRefIndex)

Specified by:: setMicrobeamManipulationROIRef in interface MetadataStore

setMicrobeamManipulationType

public void setMicrobeamManipulationType(MicrobeamManipulationType type,
                                int experimentIndex,
                                int microbeamManipulationIndex)

Specified by:: setMicrobeamManipulationType in interface MetadataStore

setMicroscopeLotNumber

public void setMicroscopeLotNumber(String lotNumber,
                          int instrumentIndex)

Specified by:: setMicroscopeLotNumber in interface MetadataStore

setMicroscopeManufacturer

public void setMicroscopeManufacturer(String manufacturer,
                             int instrumentIndex)

Specified by:: setMicroscopeManufacturer in interface MetadataStore

setMicroscopeModel

public void setMicroscopeModel(String model,
                      int instrumentIndex)

Specified by:: setMicroscopeModel in interface MetadataStore

setMicroscopeSerialNumber

public void setMicroscopeSerialNumber(String serialNumber,
                             int instrumentIndex)

Specified by:: setMicroscopeSerialNumber in interface MetadataStore

setMicroscopeType

public void setMicroscopeType(MicroscopeType type,
                     int instrumentIndex)

Specified by:: setMicroscopeType in interface MetadataStore

setObjectiveAnnotationRef

public void setObjectiveAnnotationRef(String annotation,
                             int instrumentIndex,
                             int objectiveIndex,
                             int annotationRefIndex)

Specified by:: setObjectiveAnnotationRef in interface MetadataStore

setObjectiveCalibratedMagnification

public void setObjectiveCalibratedMagnification(Double calibratedMagnification,
                                       int instrumentIndex,
                                       int objectiveIndex)

Specified by:: setObjectiveCalibratedMagnification in interface MetadataStore

setObjectiveCorrection

public void setObjectiveCorrection(Correction correction,
                          int instrumentIndex,
                          int objectiveIndex)

Specified by:: setObjectiveCorrection in interface MetadataStore

setObjectiveID

public void setObjectiveID(String id,
                  int instrumentIndex,
                  int objectiveIndex)

Specified by:: setObjectiveID in interface MetadataStore

setObjectiveImmersion

public void setObjectiveImmersion(Immersion immersion,
                         int instrumentIndex,
                         int objectiveIndex)

Specified by:: setObjectiveImmersion in interface MetadataStore

setObjectiveIris

public void setObjectiveIris(Boolean iris,
                    int instrumentIndex,
                    int objectiveIndex)

Specified by:: setObjectiveIris in interface MetadataStore

setObjectiveLensNA

public void setObjectiveLensNA(Double lensNA,
                      int instrumentIndex,
                      int objectiveIndex)

Specified by:: setObjectiveLensNA in interface MetadataStore

setObjectiveLotNumber

public void setObjectiveLotNumber(String lotNumber,
                         int instrumentIndex,
                         int objectiveIndex)

Specified by:: setObjectiveLotNumber in interface MetadataStore

setObjectiveManufacturer

public void setObjectiveManufacturer(String manufacturer,
                            int instrumentIndex,
                            int objectiveIndex)

Specified by:: setObjectiveManufacturer in interface MetadataStore

setObjectiveModel

public void setObjectiveModel(String model,
                     int instrumentIndex,
                     int objectiveIndex)

Specified by:: setObjectiveModel in interface MetadataStore

setObjectiveNominalMagnification

public void setObjectiveNominalMagnification(Double nominalMagnification,
                                    int instrumentIndex,
                                    int objectiveIndex)

Specified by:: setObjectiveNominalMagnification in interface MetadataStore

setObjectiveSerialNumber

public void setObjectiveSerialNumber(String serialNumber,
                            int instrumentIndex,
                            int objectiveIndex)

Specified by:: setObjectiveSerialNumber in interface MetadataStore

setObjectiveWorkingDistance

public void setObjectiveWorkingDistance(Length workingDistance,
                               int instrumentIndex,
                               int objectiveIndex)

Specified by:: setObjectiveWorkingDistance in interface MetadataStore

setObjectiveSettingsCorrectionCollar

public void setObjectiveSettingsCorrectionCollar(Double correctionCollar,
                                        int imageIndex)

Specified by:: setObjectiveSettingsCorrectionCollar in interface MetadataStore

setObjectiveSettingsID

public void setObjectiveSettingsID(String id,
                          int imageIndex)

Specified by:: setObjectiveSettingsID in interface MetadataStore

setObjectiveSettingsMedium

public void setObjectiveSettingsMedium(Medium medium,
                              int imageIndex)

Specified by:: setObjectiveSettingsMedium in interface MetadataStore

setObjectiveSettingsRefractiveIndex

public void setObjectiveSettingsRefractiveIndex(Double refractiveIndex,
                                       int imageIndex)

Specified by:: setObjectiveSettingsRefractiveIndex in interface MetadataStore

setPixelsBigEndian

public void setPixelsBigEndian(Boolean bigEndian,
                      int imageIndex)

Specified by:: setPixelsBigEndian in interface MetadataStore

setPixelsDimensionOrder

public void setPixelsDimensionOrder(DimensionOrder dimensionOrder,
                           int imageIndex)

Specified by:: setPixelsDimensionOrder in interface MetadataStore

setPixelsID

public void setPixelsID(String id,
               int imageIndex)

Specified by:: setPixelsID in interface MetadataStore

setPixelsInterleaved

public void setPixelsInterleaved(Boolean interleaved,
                        int imageIndex)

Specified by:: setPixelsInterleaved in interface MetadataStore

setPixelsPhysicalSizeX

public void setPixelsPhysicalSizeX(Length physicalSizeX,
                          int imageIndex)

Specified by:: setPixelsPhysicalSizeX in interface MetadataStore

setPixelsPhysicalSizeY

public void setPixelsPhysicalSizeY(Length physicalSizeY,
                          int imageIndex)

Specified by:: setPixelsPhysicalSizeY in interface MetadataStore

setPixelsPhysicalSizeZ

public void setPixelsPhysicalSizeZ(Length physicalSizeZ,
                          int imageIndex)

Specified by:: setPixelsPhysicalSizeZ in interface MetadataStore

setPixelsSignificantBits

public void setPixelsSignificantBits(PositiveInteger significantBits,
                            int imageIndex)

Specified by:: setPixelsSignificantBits in interface MetadataStore

setPixelsSizeC

public void setPixelsSizeC(PositiveInteger sizeC,
                  int imageIndex)

Specified by:: setPixelsSizeC in interface MetadataStore

setPixelsSizeT

public void setPixelsSizeT(PositiveInteger sizeT,
                  int imageIndex)

Specified by:: setPixelsSizeT in interface MetadataStore

setPixelsSizeX

public void setPixelsSizeX(PositiveInteger sizeX,
                  int imageIndex)

Specified by:: setPixelsSizeX in interface MetadataStore

setPixelsSizeY

public void setPixelsSizeY(PositiveInteger sizeY,
                  int imageIndex)

Specified by:: setPixelsSizeY in interface MetadataStore

setPixelsSizeZ

public void setPixelsSizeZ(PositiveInteger sizeZ,
                  int imageIndex)

Specified by:: setPixelsSizeZ in interface MetadataStore

setPixelsTimeIncrement

public void setPixelsTimeIncrement(Time timeIncrement,
                          int imageIndex)

Specified by:: setPixelsTimeIncrement in interface MetadataStore

setPixelsType

public void setPixelsType(PixelType type,
                 int imageIndex)

Specified by:: setPixelsType in interface MetadataStore

setPlaneAnnotationRef

public void setPlaneAnnotationRef(String annotation,
                         int imageIndex,
                         int planeIndex,
                         int annotationRefIndex)

Specified by:: setPlaneAnnotationRef in interface MetadataStore

setPlaneDeltaT

public void setPlaneDeltaT(Time deltaT,
                  int imageIndex,
                  int planeIndex)

Specified by:: setPlaneDeltaT in interface MetadataStore

setPlaneExposureTime

public void setPlaneExposureTime(Time exposureTime,
                        int imageIndex,
                        int planeIndex)

Specified by:: setPlaneExposureTime in interface MetadataStore

setPlaneHashSHA1

public void setPlaneHashSHA1(String hashSHA1,
                    int imageIndex,
                    int planeIndex)

Specified by:: setPlaneHashSHA1 in interface MetadataStore

setPlanePositionX

public void setPlanePositionX(Length positionX,
                     int imageIndex,
                     int planeIndex)

Specified by:: setPlanePositionX in interface MetadataStore

setPlanePositionY

public void setPlanePositionY(Length positionY,
                     int imageIndex,
                     int planeIndex)

Specified by:: setPlanePositionY in interface MetadataStore

setPlanePositionZ

public void setPlanePositionZ(Length positionZ,
                     int imageIndex,
                     int planeIndex)

Specified by:: setPlanePositionZ in interface MetadataStore

setPlaneTheC

public void setPlaneTheC(NonNegativeInteger theC,
                int imageIndex,
                int planeIndex)

Specified by:: setPlaneTheC in interface MetadataStore

setPlaneTheT

public void setPlaneTheT(NonNegativeInteger theT,
                int imageIndex,
                int planeIndex)

Specified by:: setPlaneTheT in interface MetadataStore

setPlaneTheZ

public void setPlaneTheZ(NonNegativeInteger theZ,
                int imageIndex,
                int planeIndex)

Specified by:: setPlaneTheZ in interface MetadataStore

setPlateAnnotationRef

public void setPlateAnnotationRef(String annotation,
                         int plateIndex,
                         int annotationRefIndex)

Specified by:: setPlateAnnotationRef in interface MetadataStore

setPlateColumnNamingConvention

public void setPlateColumnNamingConvention(NamingConvention columnNamingConvention,
                                  int plateIndex)

Specified by:: setPlateColumnNamingConvention in interface MetadataStore

setPlateColumns

public void setPlateColumns(PositiveInteger columns,
                   int plateIndex)

Specified by:: setPlateColumns in interface MetadataStore

setPlateDescription

public void setPlateDescription(String description,
                       int plateIndex)

Specified by:: setPlateDescription in interface MetadataStore

setPlateExternalIdentifier

public void setPlateExternalIdentifier(String externalIdentifier,
                              int plateIndex)

Specified by:: setPlateExternalIdentifier in interface MetadataStore

setPlateFieldIndex

public void setPlateFieldIndex(NonNegativeInteger fieldIndex,
                      int plateIndex)

Specified by:: setPlateFieldIndex in interface MetadataStore

setPlateID

public void setPlateID(String id,
              int plateIndex)

Specified by:: setPlateID in interface MetadataStore

setPlateName

public void setPlateName(String name,
                int plateIndex)

Specified by:: setPlateName in interface MetadataStore

setPlateRowNamingConvention

public void setPlateRowNamingConvention(NamingConvention rowNamingConvention,
                               int plateIndex)

Specified by:: setPlateRowNamingConvention in interface MetadataStore

setPlateRows

public void setPlateRows(PositiveInteger rows,
                int plateIndex)

Specified by:: setPlateRows in interface MetadataStore

setPlateStatus

public void setPlateStatus(String status,
                  int plateIndex)

Specified by:: setPlateStatus in interface MetadataStore

setPlateWellOriginX

public void setPlateWellOriginX(Length wellOriginX,
                       int plateIndex)

Specified by:: setPlateWellOriginX in interface MetadataStore

setPlateWellOriginY

public void setPlateWellOriginY(Length wellOriginY,
                       int plateIndex)

Specified by:: setPlateWellOriginY in interface MetadataStore

setPlateAcquisitionAnnotationRef

public void setPlateAcquisitionAnnotationRef(String annotation,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int annotationRefIndex)

Specified by:: setPlateAcquisitionAnnotationRef in interface MetadataStore

setPlateAcquisitionDescription

public void setPlateAcquisitionDescription(String description,
                                  int plateIndex,
                                  int plateAcquisitionIndex)

Specified by:: setPlateAcquisitionDescription in interface MetadataStore

setPlateAcquisitionEndTime

public void setPlateAcquisitionEndTime(Timestamp endTime,
                              int plateIndex,
                              int plateAcquisitionIndex)

Specified by:: setPlateAcquisitionEndTime in interface MetadataStore

setPlateAcquisitionID

public void setPlateAcquisitionID(String id,
                         int plateIndex,
                         int plateAcquisitionIndex)

Specified by:: setPlateAcquisitionID in interface MetadataStore

setPlateAcquisitionMaximumFieldCount

public void setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
                                        int plateIndex,
                                        int plateAcquisitionIndex)

Specified by:: setPlateAcquisitionMaximumFieldCount in interface MetadataStore

setPlateAcquisitionName

public void setPlateAcquisitionName(String name,
                           int plateIndex,
                           int plateAcquisitionIndex)

Specified by:: setPlateAcquisitionName in interface MetadataStore

setPlateAcquisitionStartTime

public void setPlateAcquisitionStartTime(Timestamp startTime,
                                int plateIndex,
                                int plateAcquisitionIndex)

Specified by:: setPlateAcquisitionStartTime in interface MetadataStore

setPlateAcquisitionWellSampleRef

public void setPlateAcquisitionWellSampleRef(String wellSample,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int wellSampleRefIndex)

Specified by:: setPlateAcquisitionWellSampleRef in interface MetadataStore

setPointAnnotationRef

public void setPointAnnotationRef(String annotation,
                         int ROIIndex,
                         int shapeIndex,
                         int annotationRefIndex)

Specified by:: setPointAnnotationRef in interface MetadataStore

setPointFillColor

public void setPointFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setPointFillColor in interface MetadataStore

setPointFillRule

public void setPointFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setPointFillRule in interface MetadataStore

setPointFontFamily

public void setPointFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setPointFontFamily in interface MetadataStore

setPointFontSize

public void setPointFontSize(Length fontSize,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setPointFontSize in interface MetadataStore

setPointFontStyle

public void setPointFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setPointFontStyle in interface MetadataStore

setPointID

public void setPointID(String id,
              int ROIIndex,
              int shapeIndex)

Specified by:: setPointID in interface MetadataStore

setPointLineCap

public void setPointLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setPointLineCap in interface MetadataStore

setPointLocked

public void setPointLocked(Boolean locked,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setPointLocked in interface MetadataStore

setPointStrokeColor

public void setPointStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setPointStrokeColor in interface MetadataStore

setPointStrokeDashArray

public void setPointStrokeDashArray(String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)

Specified by:: setPointStrokeDashArray in interface MetadataStore

setPointStrokeWidth

public void setPointStrokeWidth(Length strokeWidth,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setPointStrokeWidth in interface MetadataStore

setPointText

public void setPointText(String text,
                int ROIIndex,
                int shapeIndex)

Specified by:: setPointText in interface MetadataStore

setPointTheC

public void setPointTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)

Specified by:: setPointTheC in interface MetadataStore

setPointTheT

public void setPointTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)

Specified by:: setPointTheT in interface MetadataStore

setPointTheZ

public void setPointTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)

Specified by:: setPointTheZ in interface MetadataStore

setPointTransform

public void setPointTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setPointTransform in interface MetadataStore

setPointVisible

public void setPointVisible(Boolean visible,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setPointVisible in interface MetadataStore

setPointX

public void setPointX(Double x,
             int ROIIndex,
             int shapeIndex)

Specified by:: setPointX in interface MetadataStore

setPointY

public void setPointY(Double y,
             int ROIIndex,
             int shapeIndex)

Specified by:: setPointY in interface MetadataStore

setPolygonAnnotationRef

public void setPolygonAnnotationRef(String annotation,
                           int ROIIndex,
                           int shapeIndex,
                           int annotationRefIndex)

Specified by:: setPolygonAnnotationRef in interface MetadataStore

setPolygonFillColor

public void setPolygonFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setPolygonFillColor in interface MetadataStore

setPolygonFillRule

public void setPolygonFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setPolygonFillRule in interface MetadataStore

setPolygonFontFamily

public void setPolygonFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setPolygonFontFamily in interface MetadataStore

setPolygonFontSize

public void setPolygonFontSize(Length fontSize,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setPolygonFontSize in interface MetadataStore

setPolygonFontStyle

public void setPolygonFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setPolygonFontStyle in interface MetadataStore

setPolygonID

public void setPolygonID(String id,
                int ROIIndex,
                int shapeIndex)

Specified by:: setPolygonID in interface MetadataStore

setPolygonLineCap

public void setPolygonLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setPolygonLineCap in interface MetadataStore

setPolygonLocked

public void setPolygonLocked(Boolean locked,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setPolygonLocked in interface MetadataStore

setPolygonStrokeColor

public void setPolygonStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setPolygonStrokeColor in interface MetadataStore

setPolygonStrokeDashArray

public void setPolygonStrokeDashArray(String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)

Specified by:: setPolygonStrokeDashArray in interface MetadataStore

setPolygonStrokeWidth

public void setPolygonStrokeWidth(Length strokeWidth,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setPolygonStrokeWidth in interface MetadataStore

setPolygonText

public void setPolygonText(String text,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setPolygonText in interface MetadataStore

setPolygonTheC

public void setPolygonTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setPolygonTheC in interface MetadataStore

setPolygonTheT

public void setPolygonTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setPolygonTheT in interface MetadataStore

setPolygonTheZ

public void setPolygonTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setPolygonTheZ in interface MetadataStore

setPolygonTransform

public void setPolygonTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setPolygonTransform in interface MetadataStore

setPolygonVisible

public void setPolygonVisible(Boolean visible,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setPolygonVisible in interface MetadataStore

setPolygonPoints

public void setPolygonPoints(String points,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setPolygonPoints in interface MetadataStore

setPolylineAnnotationRef

public void setPolylineAnnotationRef(String annotation,
                            int ROIIndex,
                            int shapeIndex,
                            int annotationRefIndex)

Specified by:: setPolylineAnnotationRef in interface MetadataStore

setPolylineFillColor

public void setPolylineFillColor(Color fillColor,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setPolylineFillColor in interface MetadataStore

setPolylineFillRule

public void setPolylineFillRule(FillRule fillRule,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setPolylineFillRule in interface MetadataStore

setPolylineFontFamily

public void setPolylineFontFamily(FontFamily fontFamily,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setPolylineFontFamily in interface MetadataStore

setPolylineFontSize

public void setPolylineFontSize(Length fontSize,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setPolylineFontSize in interface MetadataStore

setPolylineFontStyle

public void setPolylineFontStyle(FontStyle fontStyle,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setPolylineFontStyle in interface MetadataStore

setPolylineID

public void setPolylineID(String id,
                 int ROIIndex,
                 int shapeIndex)

Specified by:: setPolylineID in interface MetadataStore

setPolylineLineCap

public void setPolylineLineCap(LineCap lineCap,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setPolylineLineCap in interface MetadataStore

setPolylineLocked

public void setPolylineLocked(Boolean locked,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setPolylineLocked in interface MetadataStore

setPolylineStrokeColor

public void setPolylineStrokeColor(Color strokeColor,
                          int ROIIndex,
                          int shapeIndex)

Specified by:: setPolylineStrokeColor in interface MetadataStore

setPolylineStrokeDashArray

public void setPolylineStrokeDashArray(String strokeDashArray,
                              int ROIIndex,
                              int shapeIndex)

Specified by:: setPolylineStrokeDashArray in interface MetadataStore

setPolylineStrokeWidth

public void setPolylineStrokeWidth(Length strokeWidth,
                          int ROIIndex,
                          int shapeIndex)

Specified by:: setPolylineStrokeWidth in interface MetadataStore

setPolylineText

public void setPolylineText(String text,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setPolylineText in interface MetadataStore

setPolylineTheC

public void setPolylineTheC(NonNegativeInteger theC,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setPolylineTheC in interface MetadataStore

setPolylineTheT

public void setPolylineTheT(NonNegativeInteger theT,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setPolylineTheT in interface MetadataStore

setPolylineTheZ

public void setPolylineTheZ(NonNegativeInteger theZ,
                   int ROIIndex,
                   int shapeIndex)

Specified by:: setPolylineTheZ in interface MetadataStore

setPolylineTransform

public void setPolylineTransform(AffineTransform transform,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setPolylineTransform in interface MetadataStore

setPolylineVisible

public void setPolylineVisible(Boolean visible,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setPolylineVisible in interface MetadataStore

setPolylineMarkerEnd

public void setPolylineMarkerEnd(Marker markerEnd,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setPolylineMarkerEnd in interface MetadataStore

setPolylineMarkerStart

public void setPolylineMarkerStart(Marker markerStart,
                          int ROIIndex,
                          int shapeIndex)

Specified by:: setPolylineMarkerStart in interface MetadataStore

setPolylinePoints

public void setPolylinePoints(String points,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setPolylinePoints in interface MetadataStore

setProjectAnnotationRef

public void setProjectAnnotationRef(String annotation,
                           int projectIndex,
                           int annotationRefIndex)

Specified by:: setProjectAnnotationRef in interface MetadataStore

setProjectDatasetRef

public void setProjectDatasetRef(String dataset,
                        int projectIndex,
                        int datasetRefIndex)

Specified by:: setProjectDatasetRef in interface MetadataStore

setProjectDescription

public void setProjectDescription(String description,
                         int projectIndex)

Specified by:: setProjectDescription in interface MetadataStore

setProjectExperimenterGroupRef

public void setProjectExperimenterGroupRef(String experimenterGroup,
                                  int projectIndex)

Specified by:: setProjectExperimenterGroupRef in interface MetadataStore

setProjectExperimenterRef

public void setProjectExperimenterRef(String experimenter,
                             int projectIndex)

Specified by:: setProjectExperimenterRef in interface MetadataStore

setProjectID

public void setProjectID(String id,
                int projectIndex)

Specified by:: setProjectID in interface MetadataStore

setProjectName

public void setProjectName(String name,
                  int projectIndex)

Specified by:: setProjectName in interface MetadataStore

setROIAnnotationRef

public void setROIAnnotationRef(String annotation,
                       int ROIIndex,
                       int annotationRefIndex)

Specified by:: setROIAnnotationRef in interface MetadataStore

setROIDescription

public void setROIDescription(String description,
                     int ROIIndex)

Specified by:: setROIDescription in interface MetadataStore

setROIID

public void setROIID(String id,
            int ROIIndex)

Specified by:: setROIID in interface MetadataStore

setROIName

public void setROIName(String name,
              int ROIIndex)

Specified by:: setROIName in interface MetadataStore

setROINamespace

public void setROINamespace(String namespace,
                   int ROIIndex)

Specified by:: setROINamespace in interface MetadataStore

setReagentAnnotationRef

public void setReagentAnnotationRef(String annotation,
                           int screenIndex,
                           int reagentIndex,
                           int annotationRefIndex)

Specified by:: setReagentAnnotationRef in interface MetadataStore

setReagentDescription

public void setReagentDescription(String description,
                         int screenIndex,
                         int reagentIndex)

Specified by:: setReagentDescription in interface MetadataStore

setReagentID

public void setReagentID(String id,
                int screenIndex,
                int reagentIndex)

Specified by:: setReagentID in interface MetadataStore

setReagentName

public void setReagentName(String name,
                  int screenIndex,
                  int reagentIndex)

Specified by:: setReagentName in interface MetadataStore

setReagentReagentIdentifier

public void setReagentReagentIdentifier(String reagentIdentifier,
                               int screenIndex,
                               int reagentIndex)

Specified by:: setReagentReagentIdentifier in interface MetadataStore

setRectangleAnnotationRef

public void setRectangleAnnotationRef(String annotation,
                             int ROIIndex,
                             int shapeIndex,
                             int annotationRefIndex)

Specified by:: setRectangleAnnotationRef in interface MetadataStore

setRectangleFillColor

public void setRectangleFillColor(Color fillColor,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setRectangleFillColor in interface MetadataStore

setRectangleFillRule

public void setRectangleFillRule(FillRule fillRule,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setRectangleFillRule in interface MetadataStore

setRectangleFontFamily

public void setRectangleFontFamily(FontFamily fontFamily,
                          int ROIIndex,
                          int shapeIndex)

Specified by:: setRectangleFontFamily in interface MetadataStore

setRectangleFontSize

public void setRectangleFontSize(Length fontSize,
                        int ROIIndex,
                        int shapeIndex)

Specified by:: setRectangleFontSize in interface MetadataStore

setRectangleFontStyle

public void setRectangleFontStyle(FontStyle fontStyle,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setRectangleFontStyle in interface MetadataStore

setRectangleID

public void setRectangleID(String id,
                  int ROIIndex,
                  int shapeIndex)

Specified by:: setRectangleID in interface MetadataStore

setRectangleLineCap

public void setRectangleLineCap(LineCap lineCap,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setRectangleLineCap in interface MetadataStore

setRectangleLocked

public void setRectangleLocked(Boolean locked,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setRectangleLocked in interface MetadataStore

setRectangleStrokeColor

public void setRectangleStrokeColor(Color strokeColor,
                           int ROIIndex,
                           int shapeIndex)

Specified by:: setRectangleStrokeColor in interface MetadataStore

setRectangleStrokeDashArray

public void setRectangleStrokeDashArray(String strokeDashArray,
                               int ROIIndex,
                               int shapeIndex)

Specified by:: setRectangleStrokeDashArray in interface MetadataStore

setRectangleStrokeWidth

public void setRectangleStrokeWidth(Length strokeWidth,
                           int ROIIndex,
                           int shapeIndex)

Specified by:: setRectangleStrokeWidth in interface MetadataStore

setRectangleText

public void setRectangleText(String text,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setRectangleText in interface MetadataStore

setRectangleTheC

public void setRectangleTheC(NonNegativeInteger theC,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setRectangleTheC in interface MetadataStore

setRectangleTheT

public void setRectangleTheT(NonNegativeInteger theT,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setRectangleTheT in interface MetadataStore

setRectangleTheZ

public void setRectangleTheZ(NonNegativeInteger theZ,
                    int ROIIndex,
                    int shapeIndex)

Specified by:: setRectangleTheZ in interface MetadataStore

setRectangleTransform

public void setRectangleTransform(AffineTransform transform,
                         int ROIIndex,
                         int shapeIndex)

Specified by:: setRectangleTransform in interface MetadataStore

setRectangleVisible

public void setRectangleVisible(Boolean visible,
                       int ROIIndex,
                       int shapeIndex)

Specified by:: setRectangleVisible in interface MetadataStore

setRectangleHeight

public void setRectangleHeight(Double height,
                      int ROIIndex,
                      int shapeIndex)

Specified by:: setRectangleHeight in interface MetadataStore

setRectangleWidth

public void setRectangleWidth(Double width,
                     int ROIIndex,
                     int shapeIndex)

Specified by:: setRectangleWidth in interface MetadataStore

setRectangleX

public void setRectangleX(Double x,
                 int ROIIndex,
                 int shapeIndex)

Specified by:: setRectangleX in interface MetadataStore

setRectangleY

public void setRectangleY(Double y,
                 int ROIIndex,
                 int shapeIndex)

Specified by:: setRectangleY in interface MetadataStore

setRightsRightsHeld
```
public void setRightsRightsHeld(String rightsHeld)
```
Specified by:

setRightsRightsHeld in interface MetadataStore

setRightsRightsHolder
```
public void setRightsRightsHolder(String rightsHolder)
```
Specified by:

setRightsRightsHolder in interface MetadataStore

setScreenAnnotationRef

public void setScreenAnnotationRef(String annotation,
                          int screenIndex,
                          int annotationRefIndex)

Specified by:: setScreenAnnotationRef in interface MetadataStore

setScreenDescription

public void setScreenDescription(String description,
                        int screenIndex)

Specified by:: setScreenDescription in interface MetadataStore

setScreenID

public void setScreenID(String id,
               int screenIndex)

Specified by:: setScreenID in interface MetadataStore

setScreenName

public void setScreenName(String name,
                 int screenIndex)

Specified by:: setScreenName in interface MetadataStore

setScreenPlateRef

public void setScreenPlateRef(String plate,
                     int screenIndex,
                     int plateRefIndex)

Specified by:: setScreenPlateRef in interface MetadataStore

setScreenProtocolDescription

public void setScreenProtocolDescription(String protocolDescription,
                                int screenIndex)

Specified by:: setScreenProtocolDescription in interface MetadataStore

setScreenProtocolIdentifier

public void setScreenProtocolIdentifier(String protocolIdentifier,
                               int screenIndex)

Specified by:: setScreenProtocolIdentifier in interface MetadataStore

setScreenReagentSetDescription

public void setScreenReagentSetDescription(String reagentSetDescription,
                                  int screenIndex)

Specified by:: setScreenReagentSetDescription in interface MetadataStore

setScreenReagentSetIdentifier

public void setScreenReagentSetIdentifier(String reagentSetIdentifier,
                                 int screenIndex)

Specified by:: setScreenReagentSetIdentifier in interface MetadataStore

setScreenType

public void setScreenType(String type,
                 int screenIndex)

Specified by:: setScreenType in interface MetadataStore

setStageLabelName

public void setStageLabelName(String name,
                     int imageIndex)

Specified by:: setStageLabelName in interface MetadataStore

setStageLabelX

public void setStageLabelX(Length x,
                  int imageIndex)

Specified by:: setStageLabelX in interface MetadataStore

setStageLabelY

public void setStageLabelY(Length y,
                  int imageIndex)

Specified by:: setStageLabelY in interface MetadataStore

setStageLabelZ

public void setStageLabelZ(Length z,
                  int imageIndex)

Specified by:: setStageLabelZ in interface MetadataStore

setTagAnnotationAnnotationRef

public void setTagAnnotationAnnotationRef(String annotation,
                                 int tagAnnotationIndex,
                                 int annotationRefIndex)

Specified by:: setTagAnnotationAnnotationRef in interface MetadataStore

setTagAnnotationAnnotator

public void setTagAnnotationAnnotator(String annotator,
                             int tagAnnotationIndex)

Specified by:: setTagAnnotationAnnotator in interface MetadataStore

setTagAnnotationDescription

public void setTagAnnotationDescription(String description,
                               int tagAnnotationIndex)

Specified by:: setTagAnnotationDescription in interface MetadataStore

setTagAnnotationID

public void setTagAnnotationID(String id,
                      int tagAnnotationIndex)

Specified by:: setTagAnnotationID in interface MetadataStore

setTagAnnotationNamespace

public void setTagAnnotationNamespace(String namespace,
                             int tagAnnotationIndex)

Specified by:: setTagAnnotationNamespace in interface MetadataStore

setTagAnnotationValue

public void setTagAnnotationValue(String value,
                         int tagAnnotationIndex)

Specified by:: setTagAnnotationValue in interface MetadataStore

setTermAnnotationAnnotationRef

public void setTermAnnotationAnnotationRef(String annotation,
                                  int termAnnotationIndex,
                                  int annotationRefIndex)

Specified by:: setTermAnnotationAnnotationRef in interface MetadataStore

setTermAnnotationAnnotator

public void setTermAnnotationAnnotator(String annotator,
                              int termAnnotationIndex)

Specified by:: setTermAnnotationAnnotator in interface MetadataStore

setTermAnnotationDescription

public void setTermAnnotationDescription(String description,
                                int termAnnotationIndex)

Specified by:: setTermAnnotationDescription in interface MetadataStore

setTermAnnotationID

public void setTermAnnotationID(String id,
                       int termAnnotationIndex)

Specified by:: setTermAnnotationID in interface MetadataStore

setTermAnnotationNamespace

public void setTermAnnotationNamespace(String namespace,
                              int termAnnotationIndex)

Specified by:: setTermAnnotationNamespace in interface MetadataStore

setTermAnnotationValue

public void setTermAnnotationValue(String value,
                          int termAnnotationIndex)

Specified by:: setTermAnnotationValue in interface MetadataStore

setTiffDataFirstC

public void setTiffDataFirstC(NonNegativeInteger firstC,
                     int imageIndex,
                     int tiffDataIndex)

Specified by:: setTiffDataFirstC in interface MetadataStore

setTiffDataFirstT

public void setTiffDataFirstT(NonNegativeInteger firstT,
                     int imageIndex,
                     int tiffDataIndex)

Specified by:: setTiffDataFirstT in interface MetadataStore

setTiffDataFirstZ

public void setTiffDataFirstZ(NonNegativeInteger firstZ,
                     int imageIndex,
                     int tiffDataIndex)

Specified by:: setTiffDataFirstZ in interface MetadataStore

setTiffDataIFD

public void setTiffDataIFD(NonNegativeInteger ifd,
                  int imageIndex,
                  int tiffDataIndex)

Specified by:: setTiffDataIFD in interface MetadataStore

setTiffDataPlaneCount

public void setTiffDataPlaneCount(NonNegativeInteger planeCount,
                         int imageIndex,
                         int tiffDataIndex)

Specified by:: setTiffDataPlaneCount in interface MetadataStore

setTimestampAnnotationAnnotationRef

public void setTimestampAnnotationAnnotationRef(String annotation,
                                       int timestampAnnotationIndex,
                                       int annotationRefIndex)

Specified by:: setTimestampAnnotationAnnotationRef in interface MetadataStore

setTimestampAnnotationAnnotator

public void setTimestampAnnotationAnnotator(String annotator,
                                   int timestampAnnotationIndex)

Specified by:: setTimestampAnnotationAnnotator in interface MetadataStore

setTimestampAnnotationDescription

public void setTimestampAnnotationDescription(String description,
                                     int timestampAnnotationIndex)

Specified by:: setTimestampAnnotationDescription in interface MetadataStore

setTimestampAnnotationID

public void setTimestampAnnotationID(String id,
                            int timestampAnnotationIndex)

Specified by:: setTimestampAnnotationID in interface MetadataStore

setTimestampAnnotationNamespace

public void setTimestampAnnotationNamespace(String namespace,
                                   int timestampAnnotationIndex)

Specified by:: setTimestampAnnotationNamespace in interface MetadataStore

setTimestampAnnotationValue

public void setTimestampAnnotationValue(Timestamp value,
                               int timestampAnnotationIndex)

Specified by:: setTimestampAnnotationValue in interface MetadataStore

setTransmittanceRangeCutIn

public void setTransmittanceRangeCutIn(Length cutIn,
                              int instrumentIndex,
                              int filterIndex)

Specified by:: setTransmittanceRangeCutIn in interface MetadataStore

setTransmittanceRangeCutInTolerance

public void setTransmittanceRangeCutInTolerance(Length cutInTolerance,
                                       int instrumentIndex,
                                       int filterIndex)

Specified by:: setTransmittanceRangeCutInTolerance in interface MetadataStore

setTransmittanceRangeCutOut

public void setTransmittanceRangeCutOut(Length cutOut,
                               int instrumentIndex,
                               int filterIndex)

Specified by:: setTransmittanceRangeCutOut in interface MetadataStore

setTransmittanceRangeCutOutTolerance

public void setTransmittanceRangeCutOutTolerance(Length cutOutTolerance,
                                        int instrumentIndex,
                                        int filterIndex)

Specified by:: setTransmittanceRangeCutOutTolerance in interface MetadataStore

setTransmittanceRangeTransmittance

public void setTransmittanceRangeTransmittance(PercentFraction transmittance,
                                      int instrumentIndex,
                                      int filterIndex)

Specified by:: setTransmittanceRangeTransmittance in interface MetadataStore

setUUIDFileName

public void setUUIDFileName(String fileName,
                   int imageIndex,
                   int tiffDataIndex)

Specified by:: setUUIDFileName in interface MetadataStore

setWellAnnotationRef

public void setWellAnnotationRef(String annotation,
                        int plateIndex,
                        int wellIndex,
                        int annotationRefIndex)

Specified by:: setWellAnnotationRef in interface MetadataStore

setWellColor

public void setWellColor(Color color,
                int plateIndex,
                int wellIndex)

Specified by:: setWellColor in interface MetadataStore

setWellColumn

public void setWellColumn(NonNegativeInteger column,
                 int plateIndex,
                 int wellIndex)

Specified by:: setWellColumn in interface MetadataStore

setWellExternalDescription

public void setWellExternalDescription(String externalDescription,
                              int plateIndex,
                              int wellIndex)

Specified by:: setWellExternalDescription in interface MetadataStore

setWellExternalIdentifier

public void setWellExternalIdentifier(String externalIdentifier,
                             int plateIndex,
                             int wellIndex)

Specified by:: setWellExternalIdentifier in interface MetadataStore

setWellID

public void setWellID(String id,
             int plateIndex,
             int wellIndex)

Specified by:: setWellID in interface MetadataStore

setWellReagentRef

public void setWellReagentRef(String reagent,
                     int plateIndex,
                     int wellIndex)

Specified by:: setWellReagentRef in interface MetadataStore

setWellRow

public void setWellRow(NonNegativeInteger row,
              int plateIndex,
              int wellIndex)

Specified by:: setWellRow in interface MetadataStore

setWellType

public void setWellType(String type,
               int plateIndex,
               int wellIndex)

Specified by:: setWellType in interface MetadataStore

setWellSampleID

public void setWellSampleID(String id,
                   int plateIndex,
                   int wellIndex,
                   int wellSampleIndex)

Specified by:: setWellSampleID in interface MetadataStore

setWellSampleImageRef

public void setWellSampleImageRef(String image,
                         int plateIndex,
                         int wellIndex,
                         int wellSampleIndex)

Specified by:: setWellSampleImageRef in interface MetadataStore

setWellSampleIndex

public void setWellSampleIndex(NonNegativeInteger index,
                      int plateIndex,
                      int wellIndex,
                      int wellSampleIndex)

Specified by:: setWellSampleIndex in interface MetadataStore

setWellSamplePositionX

public void setWellSamplePositionX(Length positionX,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

Specified by:: setWellSamplePositionX in interface MetadataStore

setWellSamplePositionY

public void setWellSamplePositionY(Length positionY,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

Specified by:: setWellSamplePositionY in interface MetadataStore

setWellSampleTimepoint

public void setWellSampleTimepoint(Timestamp timepoint,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

Specified by:: setWellSampleTimepoint in interface MetadataStore

setXMLAnnotationAnnotationRef

public void setXMLAnnotationAnnotationRef(String annotation,
                                 int XMLAnnotationIndex,
                                 int annotationRefIndex)

Specified by:: setXMLAnnotationAnnotationRef in interface MetadataStore

setXMLAnnotationAnnotator

public void setXMLAnnotationAnnotator(String annotator,
                             int XMLAnnotationIndex)

Specified by:: setXMLAnnotationAnnotator in interface MetadataStore

setXMLAnnotationDescription

public void setXMLAnnotationDescription(String description,
                               int XMLAnnotationIndex)

Specified by:: setXMLAnnotationDescription in interface MetadataStore

setXMLAnnotationID

public void setXMLAnnotationID(String id,
                      int XMLAnnotationIndex)

Specified by:: setXMLAnnotationID in interface MetadataStore

setXMLAnnotationNamespace

public void setXMLAnnotationNamespace(String namespace,
                             int XMLAnnotationIndex)

Specified by:: setXMLAnnotationNamespace in interface MetadataStore

setXMLAnnotationValue

public void setXMLAnnotationValue(String value,
                         int XMLAnnotationIndex)

Specified by:: setXMLAnnotationValue in interface MetadataStore

Class AggregateMetadata

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

delegates

Constructor Detail

AggregateMetadata

Method Detail

createRoot

getRoot

setRoot

getPixelsBinDataCount

getBooleanAnnotationAnnotationCount

getCommentAnnotationAnnotationCount

getDoubleAnnotationAnnotationCount

getFileAnnotationAnnotationCount

getListAnnotationAnnotationCount

getLongAnnotationAnnotationCount

getMapAnnotationAnnotationCount

getTagAnnotationAnnotationCount

getTermAnnotationAnnotationCount

getTimestampAnnotationAnnotationCount

getXMLAnnotationAnnotationCount

getLightSourceType

getShapeType

getLightSourceAnnotationRefCount

getInstrumentAnnotationRefCount

getObjectiveAnnotationRefCount

getDetectorAnnotationRefCount

getChannelAnnotationRefCount

getPlateAnnotationRefCount

getExperimenterGroupAnnotationRefCount

getScreenAnnotationRefCount

getReagentAnnotationRefCount

getPlaneAnnotationRefCount

getExperimenterAnnotationRefCount

getDichroicAnnotationRefCount

getWellAnnotationRefCount

getFilterAnnotationRefCount

getPlateAcquisitionAnnotationRefCount

getROIAnnotationRefCount

getProjectAnnotationRefCount

getLightPathAnnotationRefCount

getImageAnnotationRefCount

getDatasetAnnotationRefCount

getShapeAnnotationRefCount

getBooleanAnnotationCount

getChannelCount

getCommentAnnotationCount

getDatasetCount

getDatasetRefCount

getDetectorCount

getDichroicCount

getDoubleAnnotationCount

getLightPathEmissionFilterRefCount

getFilterSetEmissionFilterRefCount

getLightPathExcitationFilterRefCount

getFilterSetExcitationFilterRefCount

getExperimentCount

getExperimenterCount

getExperimenterGroupCount

getExperimenterGroupExperimenterRefCount

getFileAnnotationCount

getFilterCount

getFilterSetCount

getImageCount

getDatasetImageRefCount

getInstrumentCount

getLeaderCount

getLightSourceCount

getMicrobeamManipulationLightSourceSettingsCount

getListAnnotationCount

getLongAnnotationCount

getMapAnnotationCount

getMicrobeamManipulationCount

getMicrobeamManipulationRefCount

getObjectiveCount

getPlaneCount