Uses of Class
loci.formats.in.PrairieMetadata.Sequence

Packages that use PrairieMetadata.Sequence

Package	Description
loci.formats.in	Package containing Bio-Formats file format readers.

Uses of PrairieMetadata.Sequence in loci.formats.in

Fields in loci.formats.in declared as PrairieMetadata.Sequence

Modifier and Type	Field and Description
private PrairieMetadata.Sequence	PrairieMetadata.firstSequence The first actual <Sequence> element.
private PrairieMetadata.Sequence	PrairieMetadata.Frame.sequence The <Sequence> containing this <Frame>.

Fields in loci.formats.in with type parameters of type PrairieMetadata.Sequence

Modifier and Type	Field and Description
private HashMap<Integer,PrairieMetadata.Sequence>	PrairieMetadata.sequences <Sequence> elements, keyed on each sequence's cycle.
private ArrayList<PrairieMetadata.Sequence>	PrairieReader.sequences List of Prairie metadata Sequences, ordered by cycle.

Methods in loci.formats.in that return PrairieMetadata.Sequence

Modifier and Type	Method and Description
PrairieMetadata.Sequence	PrairieMetadata.getFirstSequence() Gets the first Sequence.
PrairieMetadata.Sequence	PrairieMetadata.Frame.getSequence() Gets the <Sequence> containing this <Frame>.
PrairieMetadata.Sequence	PrairieMetadata.getSequence(int cycle) Gets the Sequence at the given cycle.
private PrairieMetadata.Sequence	PrairieReader.sequence(int s) Gets the first sequence associated with the given series.
private PrairieMetadata.Sequence	PrairieReader.sequence(int t, int s) Gets the sequence associated with the given series and time point.
private PrairieMetadata.Sequence	PrairieReader.sequence(int t, int p, int sizeP) Gets the sequence associated with the given time point and stage position.

Methods in loci.formats.in that return types with arguments of type PrairieMetadata.Sequence

Modifier and Type	Method and Description
ArrayList<PrairieMetadata.Sequence>	PrairieMetadata.getSequences() Gets all Sequences, ordered by cycle.

Methods in loci.formats.in with parameters of type PrairieMetadata.Sequence

Modifier and Type	Method and Description
private int	PrairieReader.frameIndex(PrairieMetadata.Sequence sequence, int z, int t, int s) Gets the frame index associated with the given (Z, T) position of the specified series.
private void	PrairieReader.warnFile(PrairieMetadata.Sequence sequence, int index, int channel) Emits a warning about a missing <File>.
private void	PrairieReader.warnFilename(PrairieMetadata.Sequence sequence, int index, int channel) Emits a warning about a <File>'s missing filename.
private void	PrairieReader.warnFrame(PrairieMetadata.Sequence sequence, int index) Emits a warning about a missing <Frame>.

Constructors in loci.formats.in with parameters of type PrairieMetadata.Sequence

Constructor and Description
PrairieMetadata.Frame(PrairieMetadata.Sequence sequence, Element frameElement) Creates a new frame by parsing the given <Frame> element.