ome.xml.meta

Class FilterMetadata

java.lang.Object

ome.xml.meta.FilterMetadata

All Implemented Interfaces:

BaseMetadata, MetadataStore

Direct Known Subclasses:

FilterMetadata

public class FilterMetadata
extends java.lang.Object
implements MetadataStore

An implementation of MetadataStore that removes unprintable characters from metadata values before storing them in a delegate MetadataStore.

Author:

Melissa Linkert melissa at glencoesoftware.com, Curtis Rueden ctrueden at wisc.edu

Constructor Summary

Constructors

Constructor and Description
FilterMetadata(MetadataStore store, boolean filter)

Method Summary

Methods

Modifier and Type	Method and Description
void	createRoot()
MetadataRoot	getRoot()
void	setArcID(java.lang.String id, int instrumentIndex, int lightSourceIndex)
void	setArcLotNumber(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
void	setArcManufacturer(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
void	setArcModel(java.lang.String model, int instrumentIndex, int lightSourceIndex)
void	setArcPower(java.lang.Double power, int instrumentIndex, int lightSourceIndex)
void	setArcSerialNumber(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
void	setArcType(ArcType type, int instrumentIndex, int lightSourceIndex)
void	setBinaryFileFileName(java.lang.String fileName, int fileAnnotationIndex)
void	setBinaryFileMIMEType(java.lang.String mimeType, int fileAnnotationIndex)
void	setBinaryFileSize(NonNegativeLong size, int fileAnnotationIndex)
void	setBinaryOnlyMetadataFile(java.lang.String metadataFile)
void	setBinaryOnlyUUID(java.lang.String uuid)
void	setBooleanAnnotationAnnotationRef(java.lang.String annotation, int booleanAnnotationIndex, int annotationRefIndex)
void	setBooleanAnnotationAnnotator(java.lang.String annotator, int booleanAnnotationIndex)
void	setBooleanAnnotationDescription(java.lang.String description, int booleanAnnotationIndex)
void	setBooleanAnnotationID(java.lang.String id, int booleanAnnotationIndex)
void	setBooleanAnnotationNamespace(java.lang.String namespace, int booleanAnnotationIndex)
void	setBooleanAnnotationValue(java.lang.Boolean value, int booleanAnnotationIndex)
void	setChannelAcquisitionMode(AcquisitionMode acquisitionMode, int imageIndex, int channelIndex)
void	setChannelAnnotationRef(java.lang.String annotation, int imageIndex, int channelIndex, int annotationRefIndex)
void	setChannelColor(Color color, int imageIndex, int channelIndex)
void	setChannelContrastMethod(ContrastMethod contrastMethod, int imageIndex, int channelIndex)
void	setChannelEmissionWavelength(PositiveInteger emissionWavelength, int imageIndex, int channelIndex)
void	setChannelExcitationWavelength(PositiveInteger excitationWavelength, int imageIndex, int channelIndex)
void	setChannelFilterSetRef(java.lang.String filterSet, int imageIndex, int channelIndex)
void	setChannelFluor(java.lang.String fluor, int imageIndex, int channelIndex)
void	setChannelID(java.lang.String id, int imageIndex, int channelIndex)
void	setChannelIlluminationType(IlluminationType illuminationType, int imageIndex, int channelIndex)
void	setChannelLightSourceSettingsAttenuation(PercentFraction attenuation, int imageIndex, int channelIndex)
void	setChannelLightSourceSettingsID(java.lang.String id, int imageIndex, int channelIndex)
void	setChannelLightSourceSettingsWavelength(PositiveInteger wavelength, int imageIndex, int channelIndex)
void	setChannelName(java.lang.String name, int imageIndex, int channelIndex)
void	setChannelNDFilter(java.lang.Double ndFilter, int imageIndex, int channelIndex)
void	setChannelPinholeSize(java.lang.Double pinholeSize, int imageIndex, int channelIndex)
void	setChannelPockelCellSetting(java.lang.Integer pockelCellSetting, int imageIndex, int channelIndex)
void	setChannelSamplesPerPixel(PositiveInteger samplesPerPixel, int imageIndex, int channelIndex)
void	setCommentAnnotationAnnotationRef(java.lang.String annotation, int commentAnnotationIndex, int annotationRefIndex)
void	setCommentAnnotationAnnotator(java.lang.String annotator, int commentAnnotationIndex)
void	setCommentAnnotationDescription(java.lang.String description, int commentAnnotationIndex)
void	setCommentAnnotationID(java.lang.String id, int commentAnnotationIndex)
void	setCommentAnnotationNamespace(java.lang.String namespace, int commentAnnotationIndex)
void	setCommentAnnotationValue(java.lang.String value, int commentAnnotationIndex)
void	setDatasetAnnotationRef(java.lang.String annotation, int datasetIndex, int annotationRefIndex)
void	setDatasetDescription(java.lang.String description, int datasetIndex)
void	setDatasetExperimenterGroupRef(java.lang.String experimenterGroup, int datasetIndex)
void	setDatasetExperimenterRef(java.lang.String experimenter, int datasetIndex)
void	setDatasetID(java.lang.String id, int datasetIndex)
void	setDatasetImageRef(java.lang.String image, int datasetIndex, int imageRefIndex)
void	setDatasetName(java.lang.String name, int datasetIndex)
void	setDetectorAmplificationGain(java.lang.Double amplificationGain, int instrumentIndex, int detectorIndex)
void	setDetectorGain(java.lang.Double gain, int instrumentIndex, int detectorIndex)
void	setDetectorID(java.lang.String id, int instrumentIndex, int detectorIndex)
void	setDetectorLotNumber(java.lang.String lotNumber, int instrumentIndex, int detectorIndex)
void	setDetectorManufacturer(java.lang.String manufacturer, int instrumentIndex, int detectorIndex)
void	setDetectorModel(java.lang.String model, int instrumentIndex, int detectorIndex)
void	setDetectorOffset(java.lang.Double offset, int instrumentIndex, int detectorIndex)
void	setDetectorSerialNumber(java.lang.String serialNumber, int instrumentIndex, int detectorIndex)
void	setDetectorSettingsBinning(Binning binning, int imageIndex, int channelIndex)
void	setDetectorSettingsGain(java.lang.Double gain, int imageIndex, int channelIndex)
void	setDetectorSettingsID(java.lang.String id, int imageIndex, int channelIndex)
void	setDetectorSettingsIntegration(PositiveInteger integration, int imageIndex, int channelIndex)
void	setDetectorSettingsOffset(java.lang.Double offset, int imageIndex, int channelIndex)
void	setDetectorSettingsReadOutRate(java.lang.Double readOutRate, int imageIndex, int channelIndex)
void	setDetectorSettingsVoltage(java.lang.Double voltage, int imageIndex, int channelIndex)
void	setDetectorSettingsZoom(java.lang.Double zoom, int imageIndex, int channelIndex)
void	setDetectorType(DetectorType type, int instrumentIndex, int detectorIndex)
void	setDetectorVoltage(java.lang.Double voltage, int instrumentIndex, int detectorIndex)
void	setDetectorZoom(java.lang.Double zoom, int instrumentIndex, int detectorIndex)
void	setDichroicID(java.lang.String id, int instrumentIndex, int dichroicIndex)
void	setDichroicLotNumber(java.lang.String lotNumber, int instrumentIndex, int dichroicIndex)
void	setDichroicManufacturer(java.lang.String manufacturer, int instrumentIndex, int dichroicIndex)
void	setDichroicModel(java.lang.String model, int instrumentIndex, int dichroicIndex)
void	setDichroicSerialNumber(java.lang.String serialNumber, int instrumentIndex, int dichroicIndex)
void	setDoubleAnnotationAnnotationRef(java.lang.String annotation, int doubleAnnotationIndex, int annotationRefIndex)
void	setDoubleAnnotationAnnotator(java.lang.String annotator, int doubleAnnotationIndex)
void	setDoubleAnnotationDescription(java.lang.String description, int doubleAnnotationIndex)
void	setDoubleAnnotationID(java.lang.String id, int doubleAnnotationIndex)
void	setDoubleAnnotationNamespace(java.lang.String namespace, int doubleAnnotationIndex)
void	setDoubleAnnotationValue(java.lang.Double value, int doubleAnnotationIndex)
void	setEllipseFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setEllipseFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setEllipseFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setEllipseFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setEllipseFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setEllipseID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setEllipseLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setEllipseLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setEllipseRadiusX(java.lang.Double radiusX, int ROIIndex, int shapeIndex)
void	setEllipseRadiusY(java.lang.Double radiusY, int ROIIndex, int shapeIndex)
void	setEllipseStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setEllipseStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setEllipseStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setEllipseText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setEllipseTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setEllipseTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setEllipseTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setEllipseTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setEllipseVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setEllipseX(java.lang.Double x, int ROIIndex, int shapeIndex)
void	setEllipseY(java.lang.Double y, int ROIIndex, int shapeIndex)
void	setExperimentDescription(java.lang.String description, int experimentIndex)
void	setExperimenterAnnotationRef(java.lang.String annotation, int experimenterIndex, int annotationRefIndex)
void	setExperimenterEmail(java.lang.String email, int experimenterIndex)
void	setExperimenterFirstName(java.lang.String firstName, int experimenterIndex)
void	setExperimenterGroupAnnotationRef(java.lang.String annotation, int experimenterGroupIndex, int annotationRefIndex)
void	setExperimenterGroupDescription(java.lang.String description, int experimenterGroupIndex)
void	setExperimenterGroupExperimenterRef(java.lang.String experimenter, int experimenterGroupIndex, int experimenterRefIndex)
void	setExperimenterGroupID(java.lang.String id, int experimenterGroupIndex)
void	setExperimenterGroupLeader(java.lang.String leader, int experimenterGroupIndex, int leaderIndex)
void	setExperimenterGroupName(java.lang.String name, int experimenterGroupIndex)
void	setExperimenterID(java.lang.String id, int experimenterIndex)
void	setExperimenterInstitution(java.lang.String institution, int experimenterIndex)
void	setExperimenterLastName(java.lang.String lastName, int experimenterIndex)
void	setExperimenterMiddleName(java.lang.String middleName, int experimenterIndex)
void	setExperimenterUserName(java.lang.String userName, int experimenterIndex)
void	setExperimentExperimenterRef(java.lang.String experimenter, int experimentIndex)
void	setExperimentID(java.lang.String id, int experimentIndex)
void	setExperimentType(ExperimentType type, int experimentIndex)
void	setFilamentID(java.lang.String id, int instrumentIndex, int lightSourceIndex)
void	setFilamentLotNumber(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
void	setFilamentManufacturer(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
void	setFilamentModel(java.lang.String model, int instrumentIndex, int lightSourceIndex)
void	setFilamentPower(java.lang.Double power, int instrumentIndex, int lightSourceIndex)
void	setFilamentSerialNumber(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
void	setFilamentType(FilamentType type, int instrumentIndex, int lightSourceIndex)
void	setFileAnnotationAnnotationRef(java.lang.String annotation, int fileAnnotationIndex, int annotationRefIndex)
void	setFileAnnotationAnnotator(java.lang.String annotator, int fileAnnotationIndex)
void	setFileAnnotationDescription(java.lang.String description, int fileAnnotationIndex)
void	setFileAnnotationID(java.lang.String id, int fileAnnotationIndex)
void	setFileAnnotationNamespace(java.lang.String namespace, int fileAnnotationIndex)
void	setFilterFilterWheel(java.lang.String filterWheel, int instrumentIndex, int filterIndex)
void	setFilterID(java.lang.String id, int instrumentIndex, int filterIndex)
void	setFilterLotNumber(java.lang.String lotNumber, int instrumentIndex, int filterIndex)
void	setFilterManufacturer(java.lang.String manufacturer, int instrumentIndex, int filterIndex)
void	setFilterModel(java.lang.String model, int instrumentIndex, int filterIndex)
void	setFilterSerialNumber(java.lang.String serialNumber, int instrumentIndex, int filterIndex)
void	setFilterSetDichroicRef(java.lang.String dichroic, int instrumentIndex, int filterSetIndex)
void	setFilterSetEmissionFilterRef(java.lang.String emissionFilter, int instrumentIndex, int filterSetIndex, int emissionFilterRefIndex)
void	setFilterSetExcitationFilterRef(java.lang.String excitationFilter, int instrumentIndex, int filterSetIndex, int excitationFilterRefIndex)
void	setFilterSetID(java.lang.String id, int instrumentIndex, int filterSetIndex)
void	setFilterSetLotNumber(java.lang.String lotNumber, int instrumentIndex, int filterSetIndex)
void	setFilterSetManufacturer(java.lang.String manufacturer, int instrumentIndex, int filterSetIndex)
void	setFilterSetModel(java.lang.String model, int instrumentIndex, int filterSetIndex)
void	setFilterSetSerialNumber(java.lang.String serialNumber, int instrumentIndex, int filterSetIndex)
void	setFilterType(FilterType type, int instrumentIndex, int filterIndex)
void	setImageAcquisitionDate(Timestamp acquisitionDate, int imageIndex)
void	setImageAnnotationRef(java.lang.String annotation, int imageIndex, int annotationRefIndex)
void	setImageDescription(java.lang.String description, int imageIndex)
void	setImageExperimenterGroupRef(java.lang.String experimenterGroup, int imageIndex)
void	setImageExperimenterRef(java.lang.String experimenter, int imageIndex)
void	setImageExperimentRef(java.lang.String experiment, int imageIndex)
void	setImageID(java.lang.String id, int imageIndex)
void	setImageInstrumentRef(java.lang.String instrument, int imageIndex)
void	setImageMicrobeamManipulationRef(java.lang.String microbeamManipulation, int imageIndex, int microbeamManipulationRefIndex)
void	setImageName(java.lang.String name, int imageIndex)
void	setImageROIRef(java.lang.String roi, int imageIndex, int ROIRefIndex)
void	setImagingEnvironmentAirPressure(java.lang.Double airPressure, int imageIndex)
void	setImagingEnvironmentCO2Percent(PercentFraction co2Percent, int imageIndex)
void	setImagingEnvironmentHumidity(PercentFraction humidity, int imageIndex)
void	setImagingEnvironmentTemperature(java.lang.Double temperature, int imageIndex)
void	setInstrumentID(java.lang.String id, int instrumentIndex)
void	setLabelFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setLabelFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setLabelFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setLabelFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setLabelFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setLabelID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setLabelLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setLabelLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setLabelStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setLabelStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setLabelStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setLabelText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setLabelTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setLabelTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setLabelTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setLabelTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setLabelVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setLabelX(java.lang.Double x, int ROIIndex, int shapeIndex)
void	setLabelY(java.lang.Double y, int ROIIndex, int shapeIndex)
void	setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication, int instrumentIndex, int lightSourceIndex)
void	setLaserID(java.lang.String id, int instrumentIndex, int lightSourceIndex)
void	setLaserLaserMedium(LaserMedium laserMedium, int instrumentIndex, int lightSourceIndex)
void	setLaserLotNumber(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
void	setLaserManufacturer(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
void	setLaserModel(java.lang.String model, int instrumentIndex, int lightSourceIndex)
void	setLaserPockelCell(java.lang.Boolean pockelCell, int instrumentIndex, int lightSourceIndex)
void	setLaserPower(java.lang.Double power, int instrumentIndex, int lightSourceIndex)
void	setLaserPulse(Pulse pulse, int instrumentIndex, int lightSourceIndex)
void	setLaserPump(java.lang.String pump, int instrumentIndex, int lightSourceIndex)
void	setLaserRepetitionRate(java.lang.Double repetitionRate, int instrumentIndex, int lightSourceIndex)
void	setLaserSerialNumber(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
void	setLaserTuneable(java.lang.Boolean tuneable, int instrumentIndex, int lightSourceIndex)
void	setLaserType(LaserType type, int instrumentIndex, int lightSourceIndex)
void	setLaserWavelength(PositiveInteger wavelength, int instrumentIndex, int lightSourceIndex)
void	setLightEmittingDiodeID(java.lang.String id, int instrumentIndex, int lightSourceIndex)
void	setLightEmittingDiodeLotNumber(java.lang.String lotNumber, int instrumentIndex, int lightSourceIndex)
void	setLightEmittingDiodeManufacturer(java.lang.String manufacturer, int instrumentIndex, int lightSourceIndex)
void	setLightEmittingDiodeModel(java.lang.String model, int instrumentIndex, int lightSourceIndex)
void	setLightEmittingDiodePower(java.lang.Double power, int instrumentIndex, int lightSourceIndex)
void	setLightEmittingDiodeSerialNumber(java.lang.String serialNumber, int instrumentIndex, int lightSourceIndex)
void	setLightPathDichroicRef(java.lang.String dichroic, int imageIndex, int channelIndex)
void	setLightPathEmissionFilterRef(java.lang.String emissionFilter, int imageIndex, int channelIndex, int emissionFilterRefIndex)
void	setLightPathExcitationFilterRef(java.lang.String excitationFilter, int imageIndex, int channelIndex, int excitationFilterRefIndex)
void	setLineFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setLineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setLineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setLineFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setLineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setLineID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setLineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setLineLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setLineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)
void	setLineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)
void	setLineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setLineStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setLineStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setLineText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setLineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setLineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setLineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setLineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setLineVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setLineX1(java.lang.Double x1, int ROIIndex, int shapeIndex)
void	setLineX2(java.lang.Double x2, int ROIIndex, int shapeIndex)
void	setLineY1(java.lang.Double y1, int ROIIndex, int shapeIndex)
void	setLineY2(java.lang.Double y2, int ROIIndex, int shapeIndex)
void	setListAnnotationAnnotationRef(java.lang.String annotation, int listAnnotationIndex, int annotationRefIndex)
void	setListAnnotationAnnotator(java.lang.String annotator, int listAnnotationIndex)
void	setListAnnotationDescription(java.lang.String description, int listAnnotationIndex)
void	setListAnnotationID(java.lang.String id, int listAnnotationIndex)
void	setListAnnotationNamespace(java.lang.String namespace, int listAnnotationIndex)
void	setLongAnnotationAnnotationRef(java.lang.String annotation, int longAnnotationIndex, int annotationRefIndex)
void	setLongAnnotationAnnotator(java.lang.String annotator, int longAnnotationIndex)
void	setLongAnnotationDescription(java.lang.String description, int longAnnotationIndex)
void	setLongAnnotationID(java.lang.String id, int longAnnotationIndex)
void	setLongAnnotationNamespace(java.lang.String namespace, int longAnnotationIndex)
void	setLongAnnotationValue(java.lang.Long value, int longAnnotationIndex)
void	setMaskBinData(byte[] binData, int ROIIndex, int shapeIndex)
void	setMaskFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setMaskFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setMaskFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setMaskFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setMaskFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setMaskHeight(java.lang.Double height, int ROIIndex, int shapeIndex)
void	setMaskID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setMaskLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setMaskLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setMaskStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setMaskStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setMaskStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setMaskText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setMaskTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setMaskTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setMaskTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setMaskTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setMaskVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setMaskWidth(java.lang.Double width, int ROIIndex, int shapeIndex)
void	setMaskX(java.lang.Double x, int ROIIndex, int shapeIndex)
void	setMaskY(java.lang.Double y, int ROIIndex, int shapeIndex)
void	setMicrobeamManipulationDescription(java.lang.String description, int experimentIndex, int microbeamManipulationIndex)
void	setMicrobeamManipulationExperimenterRef(java.lang.String experimenter, int experimentIndex, int microbeamManipulationIndex)
void	setMicrobeamManipulationID(java.lang.String id, int experimentIndex, int microbeamManipulationIndex)
void	setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
void	setMicrobeamManipulationLightSourceSettingsID(java.lang.String id, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
void	setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength, int experimentIndex, int microbeamManipulationIndex, int lightSourceSettingsIndex)
void	setMicrobeamManipulationROIRef(java.lang.String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex)
void	setMicrobeamManipulationType(MicrobeamManipulationType type, int experimentIndex, int microbeamManipulationIndex)
void	setMicroscopeLotNumber(java.lang.String lotNumber, int instrumentIndex)
void	setMicroscopeManufacturer(java.lang.String manufacturer, int instrumentIndex)
void	setMicroscopeModel(java.lang.String model, int instrumentIndex)
void	setMicroscopeSerialNumber(java.lang.String serialNumber, int instrumentIndex)
void	setMicroscopeType(MicroscopeType type, int instrumentIndex)
void	setObjectiveCalibratedMagnification(java.lang.Double calibratedMagnification, int instrumentIndex, int objectiveIndex)
void	setObjectiveCorrection(Correction correction, int instrumentIndex, int objectiveIndex)
void	setObjectiveID(java.lang.String id, int instrumentIndex, int objectiveIndex)
void	setObjectiveImmersion(Immersion immersion, int instrumentIndex, int objectiveIndex)
void	setObjectiveIris(java.lang.Boolean iris, int instrumentIndex, int objectiveIndex)
void	setObjectiveLensNA(java.lang.Double lensNA, int instrumentIndex, int objectiveIndex)
void	setObjectiveLotNumber(java.lang.String lotNumber, int instrumentIndex, int objectiveIndex)
void	setObjectiveManufacturer(java.lang.String manufacturer, int instrumentIndex, int objectiveIndex)
void	setObjectiveModel(java.lang.String model, int instrumentIndex, int objectiveIndex)
void	setObjectiveNominalMagnification(java.lang.Double nominalMagnification, int instrumentIndex, int objectiveIndex)
void	setObjectiveSerialNumber(java.lang.String serialNumber, int instrumentIndex, int objectiveIndex)
void	setObjectiveSettingsCorrectionCollar(java.lang.Double correctionCollar, int imageIndex)
void	setObjectiveSettingsID(java.lang.String id, int imageIndex)
void	setObjectiveSettingsMedium(Medium medium, int imageIndex)
void	setObjectiveSettingsRefractiveIndex(java.lang.Double refractiveIndex, int imageIndex)
void	setObjectiveWorkingDistance(java.lang.Double workingDistance, int instrumentIndex, int objectiveIndex)
void	setPixelsAnnotationRef(java.lang.String annotation, int imageIndex, int annotationRefIndex)
void	setPixelsBigEndian(java.lang.Boolean bigEndian, int imageIndex)
void	setPixelsBinDataBigEndian(java.lang.Boolean bigEndian, int imageIndex, int binDataIndex)
void	setPixelsDimensionOrder(DimensionOrder dimensionOrder, int imageIndex)
void	setPixelsID(java.lang.String id, int imageIndex)
void	setPixelsInterleaved(java.lang.Boolean interleaved, int imageIndex)
void	setPixelsPhysicalSizeX(PositiveFloat physicalSizeX, int imageIndex)
void	setPixelsPhysicalSizeY(PositiveFloat physicalSizeY, int imageIndex)
void	setPixelsPhysicalSizeZ(PositiveFloat physicalSizeZ, int imageIndex)
void	setPixelsSignificantBits(PositiveInteger significantBits, int imageIndex)
void	setPixelsSizeC(PositiveInteger sizeC, int imageIndex)
void	setPixelsSizeT(PositiveInteger sizeT, int imageIndex)
void	setPixelsSizeX(PositiveInteger sizeX, int imageIndex)
void	setPixelsSizeY(PositiveInteger sizeY, int imageIndex)
void	setPixelsSizeZ(PositiveInteger sizeZ, int imageIndex)
void	setPixelsTimeIncrement(java.lang.Double timeIncrement, int imageIndex)
void	setPixelsType(PixelType type, int imageIndex)
void	setPlaneAnnotationRef(java.lang.String annotation, int imageIndex, int planeIndex, int annotationRefIndex)
void	setPlaneDeltaT(java.lang.Double deltaT, int imageIndex, int planeIndex)
void	setPlaneExposureTime(java.lang.Double exposureTime, int imageIndex, int planeIndex)
void	setPlaneHashSHA1(java.lang.String hashSHA1, int imageIndex, int planeIndex)
void	setPlanePositionX(java.lang.Double positionX, int imageIndex, int planeIndex)
void	setPlanePositionY(java.lang.Double positionY, int imageIndex, int planeIndex)
void	setPlanePositionZ(java.lang.Double positionZ, int imageIndex, int planeIndex)
void	setPlaneTheC(NonNegativeInteger theC, int imageIndex, int planeIndex)
void	setPlaneTheT(NonNegativeInteger theT, int imageIndex, int planeIndex)
void	setPlaneTheZ(NonNegativeInteger theZ, int imageIndex, int planeIndex)
void	setPlateAcquisitionAnnotationRef(java.lang.String annotation, int plateIndex, int plateAcquisitionIndex, int annotationRefIndex)
void	setPlateAcquisitionDescription(java.lang.String description, int plateIndex, int plateAcquisitionIndex)
void	setPlateAcquisitionEndTime(Timestamp endTime, int plateIndex, int plateAcquisitionIndex)
void	setPlateAcquisitionID(java.lang.String id, int plateIndex, int plateAcquisitionIndex)
void	setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount, int plateIndex, int plateAcquisitionIndex)
void	setPlateAcquisitionName(java.lang.String name, int plateIndex, int plateAcquisitionIndex)
void	setPlateAcquisitionStartTime(Timestamp startTime, int plateIndex, int plateAcquisitionIndex)
void	setPlateAcquisitionWellSampleRef(java.lang.String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex)
void	setPlateAnnotationRef(java.lang.String annotation, int plateIndex, int annotationRefIndex)
void	setPlateColumnNamingConvention(NamingConvention columnNamingConvention, int plateIndex)
void	setPlateColumns(PositiveInteger columns, int plateIndex)
void	setPlateDescription(java.lang.String description, int plateIndex)
void	setPlateExternalIdentifier(java.lang.String externalIdentifier, int plateIndex)
void	setPlateFieldIndex(NonNegativeInteger fieldIndex, int plateIndex)
void	setPlateID(java.lang.String id, int plateIndex)
void	setPlateName(java.lang.String name, int plateIndex)
void	setPlateRowNamingConvention(NamingConvention rowNamingConvention, int plateIndex)
void	setPlateRows(PositiveInteger rows, int plateIndex)
void	setPlateStatus(java.lang.String status, int plateIndex)
void	setPlateWellOriginX(java.lang.Double wellOriginX, int plateIndex)
void	setPlateWellOriginY(java.lang.Double wellOriginY, int plateIndex)
void	setPointFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setPointFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setPointFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setPointFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setPointFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setPointID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setPointLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setPointLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setPointStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setPointStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setPointStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setPointText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setPointTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setPointTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setPointTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setPointTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setPointVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setPointX(java.lang.Double x, int ROIIndex, int shapeIndex)
void	setPointY(java.lang.Double y, int ROIIndex, int shapeIndex)
void	setPolygonFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setPolygonFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setPolygonFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setPolygonFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setPolygonFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setPolygonID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setPolygonLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setPolygonLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setPolygonPoints(java.lang.String points, int ROIIndex, int shapeIndex)
void	setPolygonStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setPolygonStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setPolygonStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setPolygonText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setPolygonTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setPolygonTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setPolygonTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setPolygonTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setPolygonVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setPolylineFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setPolylineFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setPolylineFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setPolylineFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setPolylineFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setPolylineID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setPolylineLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setPolylineLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setPolylineMarkerEnd(Marker markerEnd, int ROIIndex, int shapeIndex)
void	setPolylineMarkerStart(Marker markerStart, int ROIIndex, int shapeIndex)
void	setPolylinePoints(java.lang.String points, int ROIIndex, int shapeIndex)
void	setPolylineStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setPolylineStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setPolylineStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setPolylineText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setPolylineTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setPolylineTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setPolylineTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setPolylineTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setPolylineVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setProjectAnnotationRef(java.lang.String annotation, int projectIndex, int annotationRefIndex)
void	setProjectDatasetRef(java.lang.String dataset, int projectIndex, int datasetRefIndex)
void	setProjectDescription(java.lang.String description, int projectIndex)
void	setProjectExperimenterGroupRef(java.lang.String experimenterGroup, int projectIndex)
void	setProjectExperimenterRef(java.lang.String experimenter, int projectIndex)
void	setProjectID(java.lang.String id, int projectIndex)
void	setProjectName(java.lang.String name, int projectIndex)
void	setReagentAnnotationRef(java.lang.String annotation, int screenIndex, int reagentIndex, int annotationRefIndex)
void	setReagentDescription(java.lang.String description, int screenIndex, int reagentIndex)
void	setReagentID(java.lang.String id, int screenIndex, int reagentIndex)
void	setReagentName(java.lang.String name, int screenIndex, int reagentIndex)
void	setReagentReagentIdentifier(java.lang.String reagentIdentifier, int screenIndex, int reagentIndex)
void	setRectangleFillColor(Color fillColor, int ROIIndex, int shapeIndex)
void	setRectangleFillRule(FillRule fillRule, int ROIIndex, int shapeIndex)
void	setRectangleFontFamily(FontFamily fontFamily, int ROIIndex, int shapeIndex)
void	setRectangleFontSize(NonNegativeInteger fontSize, int ROIIndex, int shapeIndex)
void	setRectangleFontStyle(FontStyle fontStyle, int ROIIndex, int shapeIndex)
void	setRectangleHeight(java.lang.Double height, int ROIIndex, int shapeIndex)
void	setRectangleID(java.lang.String id, int ROIIndex, int shapeIndex)
void	setRectangleLineCap(LineCap lineCap, int ROIIndex, int shapeIndex)
void	setRectangleLocked(java.lang.Boolean locked, int ROIIndex, int shapeIndex)
void	setRectangleStrokeColor(Color strokeColor, int ROIIndex, int shapeIndex)
void	setRectangleStrokeDashArray(java.lang.String strokeDashArray, int ROIIndex, int shapeIndex)
void	setRectangleStrokeWidth(java.lang.Double strokeWidth, int ROIIndex, int shapeIndex)
void	setRectangleText(java.lang.String text, int ROIIndex, int shapeIndex)
void	setRectangleTheC(NonNegativeInteger theC, int ROIIndex, int shapeIndex)
void	setRectangleTheT(NonNegativeInteger theT, int ROIIndex, int shapeIndex)
void	setRectangleTheZ(NonNegativeInteger theZ, int ROIIndex, int shapeIndex)
void	setRectangleTransform(AffineTransform transform, int ROIIndex, int shapeIndex)
void	setRectangleVisible(java.lang.Boolean visible, int ROIIndex, int shapeIndex)
void	setRectangleWidth(java.lang.Double width, int ROIIndex, int shapeIndex)
void	setRectangleX(java.lang.Double x, int ROIIndex, int shapeIndex)
void	setRectangleY(java.lang.Double y, int ROIIndex, int shapeIndex)
void	setRightsRightsHeld(java.lang.String rightsHeld)
void	setRightsRightsHolder(java.lang.String rightsHolder)
void	setROIAnnotationRef(java.lang.String annotation, int ROIIndex, int annotationRefIndex)
void	setROIDescription(java.lang.String description, int ROIIndex)
void	setROIID(java.lang.String id, int ROIIndex)
void	setROIName(java.lang.String name, int ROIIndex)
void	setROINamespace(java.lang.String namespace, int ROIIndex)
void	setRoot(MetadataRoot root)
void	setRoot(java.lang.Object root) Deprecated.
void	setScreenAnnotationRef(java.lang.String annotation, int screenIndex, int annotationRefIndex)
void	setScreenDescription(java.lang.String description, int screenIndex)
void	setScreenID(java.lang.String id, int screenIndex)
void	setScreenName(java.lang.String name, int screenIndex)
void	setScreenPlateRef(java.lang.String plate, int screenIndex, int plateRefIndex)
void	setScreenProtocolDescription(java.lang.String protocolDescription, int screenIndex)
void	setScreenProtocolIdentifier(java.lang.String protocolIdentifier, int screenIndex)
void	setScreenReagentSetDescription(java.lang.String reagentSetDescription, int screenIndex)
void	setScreenReagentSetIdentifier(java.lang.String reagentSetIdentifier, int screenIndex)
void	setScreenType(java.lang.String type, int screenIndex)
void	setStageLabelName(java.lang.String name, int imageIndex)
void	setStageLabelX(java.lang.Double x, int imageIndex)
void	setStageLabelY(java.lang.Double y, int imageIndex)
void	setStageLabelZ(java.lang.Double z, int imageIndex)
void	setTagAnnotationAnnotationRef(java.lang.String annotation, int tagAnnotationIndex, int annotationRefIndex)
void	setTagAnnotationAnnotator(java.lang.String annotator, int tagAnnotationIndex)
void	setTagAnnotationDescription(java.lang.String description, int tagAnnotationIndex)
void	setTagAnnotationID(java.lang.String id, int tagAnnotationIndex)
void	setTagAnnotationNamespace(java.lang.String namespace, int tagAnnotationIndex)
void	setTagAnnotationValue(java.lang.String value, int tagAnnotationIndex)
void	setTermAnnotationAnnotationRef(java.lang.String annotation, int termAnnotationIndex, int annotationRefIndex)
void	setTermAnnotationAnnotator(java.lang.String annotator, int termAnnotationIndex)
void	setTermAnnotationDescription(java.lang.String description, int termAnnotationIndex)
void	setTermAnnotationID(java.lang.String id, int termAnnotationIndex)
void	setTermAnnotationNamespace(java.lang.String namespace, int termAnnotationIndex)
void	setTermAnnotationValue(java.lang.String value, int termAnnotationIndex)
void	setTiffDataFirstC(NonNegativeInteger firstC, int imageIndex, int tiffDataIndex)
void	setTiffDataFirstT(NonNegativeInteger firstT, int imageIndex, int tiffDataIndex)
void	setTiffDataFirstZ(NonNegativeInteger firstZ, int imageIndex, int tiffDataIndex)
void	setTiffDataIFD(NonNegativeInteger ifd, int imageIndex, int tiffDataIndex)
void	setTiffDataPlaneCount(NonNegativeInteger planeCount, int imageIndex, int tiffDataIndex)
void	setTimestampAnnotationAnnotationRef(java.lang.String annotation, int timestampAnnotationIndex, int annotationRefIndex)
void	setTimestampAnnotationAnnotator(java.lang.String annotator, int timestampAnnotationIndex)
void	setTimestampAnnotationDescription(java.lang.String description, int timestampAnnotationIndex)
void	setTimestampAnnotationID(java.lang.String id, int timestampAnnotationIndex)
void	setTimestampAnnotationNamespace(java.lang.String namespace, int timestampAnnotationIndex)
void	setTimestampAnnotationValue(Timestamp value, int timestampAnnotationIndex)
void	setTransmittanceRangeCutIn(PositiveInteger cutIn, int instrumentIndex, int filterIndex)
void	setTransmittanceRangeCutInTolerance(NonNegativeInteger cutInTolerance, int instrumentIndex, int filterIndex)
void	setTransmittanceRangeCutOut(PositiveInteger cutOut, int instrumentIndex, int filterIndex)
void	setTransmittanceRangeCutOutTolerance(NonNegativeInteger cutOutTolerance, int instrumentIndex, int filterIndex)
void	setTransmittanceRangeTransmittance(PercentFraction transmittance, int instrumentIndex, int filterIndex)
void	setUUID(java.lang.String uuid) Sets the UUID associated with this collection of metadata.
void	setUUIDFileName(java.lang.String fileName, int imageIndex, int tiffDataIndex)
void	setUUIDValue(java.lang.String value, int imageIndex, int tiffDataIndex)
void	setWellAnnotationRef(java.lang.String annotation, int plateIndex, int wellIndex, int annotationRefIndex)
void	setWellColor(Color color, int plateIndex, int wellIndex)
void	setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex)
void	setWellExternalDescription(java.lang.String externalDescription, int plateIndex, int wellIndex)
void	setWellExternalIdentifier(java.lang.String externalIdentifier, int plateIndex, int wellIndex)
void	setWellID(java.lang.String id, int plateIndex, int wellIndex)
void	setWellReagentRef(java.lang.String reagent, int plateIndex, int wellIndex)
void	setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex)
void	setWellSampleAnnotationRef(java.lang.String annotation, int plateIndex, int wellIndex, int wellSampleIndex, int annotationRefIndex)
void	setWellSampleID(java.lang.String id, int plateIndex, int wellIndex, int wellSampleIndex)
void	setWellSampleImageRef(java.lang.String image, int plateIndex, int wellIndex, int wellSampleIndex)
void	setWellSampleIndex(NonNegativeInteger index, int plateIndex, int wellIndex, int wellSampleIndex)
void	setWellSamplePositionX(java.lang.Double positionX, int plateIndex, int wellIndex, int wellSampleIndex)
void	setWellSamplePositionY(java.lang.Double positionY, int plateIndex, int wellIndex, int wellSampleIndex)
void	setWellSampleTimepoint(Timestamp timepoint, int plateIndex, int wellIndex, int wellSampleIndex)
void	setWellType(java.lang.String type, int plateIndex, int wellIndex)
void	setXMLAnnotationAnnotationRef(java.lang.String annotation, int XMLAnnotationIndex, int annotationRefIndex)
void	setXMLAnnotationAnnotator(java.lang.String annotator, int XMLAnnotationIndex)
void	setXMLAnnotationDescription(java.lang.String description, int XMLAnnotationIndex)
void	setXMLAnnotationID(java.lang.String id, int XMLAnnotationIndex)
void	setXMLAnnotationNamespace(java.lang.String namespace, int XMLAnnotationIndex)
void	setXMLAnnotationValue(java.lang.String value, int XMLAnnotationIndex)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FilterMetadata

public FilterMetadata(MetadataStore store,
              boolean filter)

Method Detail

createRoot

public void createRoot()

Specified by:

createRoot in interface MetadataStore

getRoot

public MetadataRoot getRoot()

Specified by:

getRoot in interface MetadataStore

setRoot

public void setRoot(MetadataRoot root)

Specified by:

setRoot in interface MetadataStore

setRoot

@Deprecated
public void setRoot(java.lang.Object root)

Deprecated.

Specified by:

setRoot in interface MetadataStore

setUUID

public void setUUID(java.lang.String uuid)

Description copied from interface: MetadataStore

Sets the UUID associated with this collection of metadata.

Specified by:

setUUID in interface MetadataStore

setPixelsBinDataBigEndian

public void setPixelsBinDataBigEndian(java.lang.Boolean bigEndian,
                             int imageIndex,
                             int binDataIndex)

Specified by:

setPixelsBinDataBigEndian in interface MetadataStore

setMaskBinData

public void setMaskBinData(byte[] binData,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setMaskBinData in interface MetadataStore

setArcID

public void setArcID(java.lang.String id,
            int instrumentIndex,
            int lightSourceIndex)

Specified by:

setArcID in interface MetadataStore

setArcLotNumber

public void setArcLotNumber(java.lang.String lotNumber,
                   int instrumentIndex,
                   int lightSourceIndex)

Specified by:

setArcLotNumber in interface MetadataStore

setArcManufacturer

public void setArcManufacturer(java.lang.String manufacturer,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:

setArcManufacturer in interface MetadataStore

setArcModel

public void setArcModel(java.lang.String model,
               int instrumentIndex,
               int lightSourceIndex)

Specified by:

setArcModel in interface MetadataStore

setArcPower

public void setArcPower(java.lang.Double power,
               int instrumentIndex,
               int lightSourceIndex)

Specified by:

setArcPower in interface MetadataStore

setArcSerialNumber

public void setArcSerialNumber(java.lang.String serialNumber,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:

setArcSerialNumber in interface MetadataStore

setArcType

public void setArcType(ArcType type,
              int instrumentIndex,
              int lightSourceIndex)

Specified by:

setArcType in interface MetadataStore

setBinaryFileFileName

public void setBinaryFileFileName(java.lang.String fileName,
                         int fileAnnotationIndex)

Specified by:

setBinaryFileFileName in interface MetadataStore

setBinaryFileMIMEType

public void setBinaryFileMIMEType(java.lang.String mimeType,
                         int fileAnnotationIndex)

Specified by:

setBinaryFileMIMEType in interface MetadataStore

setBinaryFileSize

public void setBinaryFileSize(NonNegativeLong size,
                     int fileAnnotationIndex)

Specified by:

setBinaryFileSize in interface MetadataStore

setBinaryOnlyMetadataFile

public void setBinaryOnlyMetadataFile(java.lang.String metadataFile)

Specified by:

setBinaryOnlyMetadataFile in interface MetadataStore

setBinaryOnlyUUID

public void setBinaryOnlyUUID(java.lang.String uuid)

Specified by:

setBinaryOnlyUUID in interface MetadataStore

setBooleanAnnotationAnnotationRef

public void setBooleanAnnotationAnnotationRef(java.lang.String annotation,
                                     int booleanAnnotationIndex,
                                     int annotationRefIndex)

Specified by:

setBooleanAnnotationAnnotationRef in interface MetadataStore

setBooleanAnnotationAnnotator

public void setBooleanAnnotationAnnotator(java.lang.String annotator,
                                 int booleanAnnotationIndex)

Specified by:

setBooleanAnnotationAnnotator in interface MetadataStore

setBooleanAnnotationDescription

public void setBooleanAnnotationDescription(java.lang.String description,
                                   int booleanAnnotationIndex)

Specified by:

setBooleanAnnotationDescription in interface MetadataStore

setBooleanAnnotationID

public void setBooleanAnnotationID(java.lang.String id,
                          int booleanAnnotationIndex)

Specified by:

setBooleanAnnotationID in interface MetadataStore

setBooleanAnnotationNamespace

public void setBooleanAnnotationNamespace(java.lang.String namespace,
                                 int booleanAnnotationIndex)

Specified by:

setBooleanAnnotationNamespace in interface MetadataStore

setBooleanAnnotationValue

public void setBooleanAnnotationValue(java.lang.Boolean value,
                             int booleanAnnotationIndex)

Specified by:

setBooleanAnnotationValue in interface MetadataStore

setChannelAcquisitionMode

public void setChannelAcquisitionMode(AcquisitionMode acquisitionMode,
                             int imageIndex,
                             int channelIndex)

Specified by:

setChannelAcquisitionMode in interface MetadataStore

setChannelAnnotationRef

public void setChannelAnnotationRef(java.lang.String annotation,
                           int imageIndex,
                           int channelIndex,
                           int annotationRefIndex)

Specified by:

setChannelAnnotationRef in interface MetadataStore

setChannelColor

public void setChannelColor(Color color,
                   int imageIndex,
                   int channelIndex)

Specified by:

setChannelColor in interface MetadataStore

setChannelContrastMethod

public void setChannelContrastMethod(ContrastMethod contrastMethod,
                            int imageIndex,
                            int channelIndex)

Specified by:

setChannelContrastMethod in interface MetadataStore

setChannelEmissionWavelength

public void setChannelEmissionWavelength(PositiveInteger emissionWavelength,
                                int imageIndex,
                                int channelIndex)

Specified by:

setChannelEmissionWavelength in interface MetadataStore

setChannelExcitationWavelength

public void setChannelExcitationWavelength(PositiveInteger excitationWavelength,
                                  int imageIndex,
                                  int channelIndex)

Specified by:

setChannelExcitationWavelength in interface MetadataStore

setChannelFilterSetRef

public void setChannelFilterSetRef(java.lang.String filterSet,
                          int imageIndex,
                          int channelIndex)

Specified by:

setChannelFilterSetRef in interface MetadataStore

setChannelFluor

public void setChannelFluor(java.lang.String fluor,
                   int imageIndex,
                   int channelIndex)

Specified by:

setChannelFluor in interface MetadataStore

setChannelID

public void setChannelID(java.lang.String id,
                int imageIndex,
                int channelIndex)

Specified by:

setChannelID in interface MetadataStore

setChannelIlluminationType

public void setChannelIlluminationType(IlluminationType illuminationType,
                              int imageIndex,
                              int channelIndex)

Specified by:

setChannelIlluminationType in interface MetadataStore

setChannelNDFilter

public void setChannelNDFilter(java.lang.Double ndFilter,
                      int imageIndex,
                      int channelIndex)

Specified by:

setChannelNDFilter in interface MetadataStore

setChannelName

public void setChannelName(java.lang.String name,
                  int imageIndex,
                  int channelIndex)

Specified by:

setChannelName in interface MetadataStore

setChannelPinholeSize

public void setChannelPinholeSize(java.lang.Double pinholeSize,
                         int imageIndex,
                         int channelIndex)

Specified by:

setChannelPinholeSize in interface MetadataStore

setChannelPockelCellSetting

public void setChannelPockelCellSetting(java.lang.Integer pockelCellSetting,
                               int imageIndex,
                               int channelIndex)

Specified by:

setChannelPockelCellSetting in interface MetadataStore

setChannelSamplesPerPixel

public void setChannelSamplesPerPixel(PositiveInteger samplesPerPixel,
                             int imageIndex,
                             int channelIndex)

Specified by:

setChannelSamplesPerPixel in interface MetadataStore

setCommentAnnotationAnnotationRef

public void setCommentAnnotationAnnotationRef(java.lang.String annotation,
                                     int commentAnnotationIndex,
                                     int annotationRefIndex)

Specified by:

setCommentAnnotationAnnotationRef in interface MetadataStore

setCommentAnnotationAnnotator

public void setCommentAnnotationAnnotator(java.lang.String annotator,
                                 int commentAnnotationIndex)

Specified by:

setCommentAnnotationAnnotator in interface MetadataStore

setCommentAnnotationDescription

public void setCommentAnnotationDescription(java.lang.String description,
                                   int commentAnnotationIndex)

Specified by:

setCommentAnnotationDescription in interface MetadataStore

setCommentAnnotationID

public void setCommentAnnotationID(java.lang.String id,
                          int commentAnnotationIndex)

Specified by:

setCommentAnnotationID in interface MetadataStore

setCommentAnnotationNamespace

public void setCommentAnnotationNamespace(java.lang.String namespace,
                                 int commentAnnotationIndex)

Specified by:

setCommentAnnotationNamespace in interface MetadataStore

setCommentAnnotationValue

public void setCommentAnnotationValue(java.lang.String value,
                             int commentAnnotationIndex)

Specified by:

setCommentAnnotationValue in interface MetadataStore

setDatasetAnnotationRef

public void setDatasetAnnotationRef(java.lang.String annotation,
                           int datasetIndex,
                           int annotationRefIndex)

Specified by:

setDatasetAnnotationRef in interface MetadataStore

setDatasetDescription

public void setDatasetDescription(java.lang.String description,
                         int datasetIndex)

Specified by:

setDatasetDescription in interface MetadataStore

setDatasetExperimenterGroupRef

public void setDatasetExperimenterGroupRef(java.lang.String experimenterGroup,
                                  int datasetIndex)

Specified by:

setDatasetExperimenterGroupRef in interface MetadataStore

setDatasetExperimenterRef

public void setDatasetExperimenterRef(java.lang.String experimenter,
                             int datasetIndex)

Specified by:

setDatasetExperimenterRef in interface MetadataStore

setDatasetID

public void setDatasetID(java.lang.String id,
                int datasetIndex)

Specified by:

setDatasetID in interface MetadataStore

setDatasetImageRef

public void setDatasetImageRef(java.lang.String image,
                      int datasetIndex,
                      int imageRefIndex)

Specified by:

setDatasetImageRef in interface MetadataStore

setDatasetName

public void setDatasetName(java.lang.String name,
                  int datasetIndex)

Specified by:

setDatasetName in interface MetadataStore

setDetectorAmplificationGain

public void setDetectorAmplificationGain(java.lang.Double amplificationGain,
                                int instrumentIndex,
                                int detectorIndex)

Specified by:

setDetectorAmplificationGain in interface MetadataStore

setDetectorGain

public void setDetectorGain(java.lang.Double gain,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:

setDetectorGain in interface MetadataStore

setDetectorID

public void setDetectorID(java.lang.String id,
                 int instrumentIndex,
                 int detectorIndex)

Specified by:

setDetectorID in interface MetadataStore

setDetectorLotNumber

public void setDetectorLotNumber(java.lang.String lotNumber,
                        int instrumentIndex,
                        int detectorIndex)

Specified by:

setDetectorLotNumber in interface MetadataStore

setDetectorManufacturer

public void setDetectorManufacturer(java.lang.String manufacturer,
                           int instrumentIndex,
                           int detectorIndex)

Specified by:

setDetectorManufacturer in interface MetadataStore

setDetectorModel

public void setDetectorModel(java.lang.String model,
                    int instrumentIndex,
                    int detectorIndex)

Specified by:

setDetectorModel in interface MetadataStore

setDetectorOffset

public void setDetectorOffset(java.lang.Double offset,
                     int instrumentIndex,
                     int detectorIndex)

Specified by:

setDetectorOffset in interface MetadataStore

setDetectorSerialNumber

public void setDetectorSerialNumber(java.lang.String serialNumber,
                           int instrumentIndex,
                           int detectorIndex)

Specified by:

setDetectorSerialNumber in interface MetadataStore

setDetectorType

public void setDetectorType(DetectorType type,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:

setDetectorType in interface MetadataStore

setDetectorVoltage

public void setDetectorVoltage(java.lang.Double voltage,
                      int instrumentIndex,
                      int detectorIndex)

Specified by:

setDetectorVoltage in interface MetadataStore

setDetectorZoom

public void setDetectorZoom(java.lang.Double zoom,
                   int instrumentIndex,
                   int detectorIndex)

Specified by:

setDetectorZoom in interface MetadataStore

setDetectorSettingsBinning

public void setDetectorSettingsBinning(Binning binning,
                              int imageIndex,
                              int channelIndex)

Specified by:

setDetectorSettingsBinning in interface MetadataStore

setDetectorSettingsGain

public void setDetectorSettingsGain(java.lang.Double gain,
                           int imageIndex,
                           int channelIndex)

Specified by:

setDetectorSettingsGain in interface MetadataStore

setDetectorSettingsID

public void setDetectorSettingsID(java.lang.String id,
                         int imageIndex,
                         int channelIndex)

Specified by:

setDetectorSettingsID in interface MetadataStore

setDetectorSettingsIntegration

public void setDetectorSettingsIntegration(PositiveInteger integration,
                                  int imageIndex,
                                  int channelIndex)

Specified by:

setDetectorSettingsIntegration in interface MetadataStore

setDetectorSettingsOffset

public void setDetectorSettingsOffset(java.lang.Double offset,
                             int imageIndex,
                             int channelIndex)

Specified by:

setDetectorSettingsOffset in interface MetadataStore

setDetectorSettingsReadOutRate

public void setDetectorSettingsReadOutRate(java.lang.Double readOutRate,
                                  int imageIndex,
                                  int channelIndex)

Specified by:

setDetectorSettingsReadOutRate in interface MetadataStore

setDetectorSettingsVoltage

public void setDetectorSettingsVoltage(java.lang.Double voltage,
                              int imageIndex,
                              int channelIndex)

Specified by:

setDetectorSettingsVoltage in interface MetadataStore

setDetectorSettingsZoom

public void setDetectorSettingsZoom(java.lang.Double zoom,
                           int imageIndex,
                           int channelIndex)

Specified by:

setDetectorSettingsZoom in interface MetadataStore

setDichroicID

public void setDichroicID(java.lang.String id,
                 int instrumentIndex,
                 int dichroicIndex)

Specified by:

setDichroicID in interface MetadataStore

setDichroicLotNumber

public void setDichroicLotNumber(java.lang.String lotNumber,
                        int instrumentIndex,
                        int dichroicIndex)

Specified by:

setDichroicLotNumber in interface MetadataStore

setDichroicManufacturer

public void setDichroicManufacturer(java.lang.String manufacturer,
                           int instrumentIndex,
                           int dichroicIndex)

Specified by:

setDichroicManufacturer in interface MetadataStore

setDichroicModel

public void setDichroicModel(java.lang.String model,
                    int instrumentIndex,
                    int dichroicIndex)

Specified by:

setDichroicModel in interface MetadataStore

setDichroicSerialNumber

public void setDichroicSerialNumber(java.lang.String serialNumber,
                           int instrumentIndex,
                           int dichroicIndex)

Specified by:

setDichroicSerialNumber in interface MetadataStore

setDoubleAnnotationAnnotationRef

public void setDoubleAnnotationAnnotationRef(java.lang.String annotation,
                                    int doubleAnnotationIndex,
                                    int annotationRefIndex)

Specified by:

setDoubleAnnotationAnnotationRef in interface MetadataStore

setDoubleAnnotationAnnotator

public void setDoubleAnnotationAnnotator(java.lang.String annotator,
                                int doubleAnnotationIndex)

Specified by:

setDoubleAnnotationAnnotator in interface MetadataStore

setDoubleAnnotationDescription

public void setDoubleAnnotationDescription(java.lang.String description,
                                  int doubleAnnotationIndex)

Specified by:

setDoubleAnnotationDescription in interface MetadataStore

setDoubleAnnotationID

public void setDoubleAnnotationID(java.lang.String id,
                         int doubleAnnotationIndex)

Specified by:

setDoubleAnnotationID in interface MetadataStore

setDoubleAnnotationNamespace

public void setDoubleAnnotationNamespace(java.lang.String namespace,
                                int doubleAnnotationIndex)

Specified by:

setDoubleAnnotationNamespace in interface MetadataStore

setDoubleAnnotationValue

public void setDoubleAnnotationValue(java.lang.Double value,
                            int doubleAnnotationIndex)

Specified by:

setDoubleAnnotationValue in interface MetadataStore

setEllipseFillColor

public void setEllipseFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setEllipseFillColor in interface MetadataStore

setEllipseFillRule

public void setEllipseFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setEllipseFillRule in interface MetadataStore

setEllipseFontFamily

public void setEllipseFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setEllipseFontFamily in interface MetadataStore

setEllipseFontSize

public void setEllipseFontSize(NonNegativeInteger fontSize,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setEllipseFontSize in interface MetadataStore

setEllipseFontStyle

public void setEllipseFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setEllipseFontStyle in interface MetadataStore

setEllipseID

public void setEllipseID(java.lang.String id,
                int ROIIndex,
                int shapeIndex)

Specified by:

setEllipseID in interface MetadataStore

setEllipseLineCap

public void setEllipseLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setEllipseLineCap in interface MetadataStore

setEllipseLocked

public void setEllipseLocked(java.lang.Boolean locked,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setEllipseLocked in interface MetadataStore

setEllipseStrokeColor

public void setEllipseStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setEllipseStrokeColor in interface MetadataStore

setEllipseStrokeDashArray

public void setEllipseStrokeDashArray(java.lang.String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)

Specified by:

setEllipseStrokeDashArray in interface MetadataStore

setEllipseStrokeWidth

public void setEllipseStrokeWidth(java.lang.Double strokeWidth,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setEllipseStrokeWidth in interface MetadataStore

setEllipseText

public void setEllipseText(java.lang.String text,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setEllipseText in interface MetadataStore

setEllipseTheC

public void setEllipseTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setEllipseTheC in interface MetadataStore

setEllipseTheT

public void setEllipseTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setEllipseTheT in interface MetadataStore

setEllipseTheZ

public void setEllipseTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setEllipseTheZ in interface MetadataStore

setEllipseTransform

public void setEllipseTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setEllipseTransform in interface MetadataStore

setEllipseVisible

public void setEllipseVisible(java.lang.Boolean visible,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setEllipseVisible in interface MetadataStore

setEllipseRadiusX

public void setEllipseRadiusX(java.lang.Double radiusX,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setEllipseRadiusX in interface MetadataStore

setEllipseRadiusY

public void setEllipseRadiusY(java.lang.Double radiusY,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setEllipseRadiusY in interface MetadataStore

setEllipseX

public void setEllipseX(java.lang.Double x,
               int ROIIndex,
               int shapeIndex)

Specified by:

setEllipseX in interface MetadataStore

setEllipseY

public void setEllipseY(java.lang.Double y,
               int ROIIndex,
               int shapeIndex)

Specified by:

setEllipseY in interface MetadataStore

setExperimentDescription

public void setExperimentDescription(java.lang.String description,
                            int experimentIndex)

Specified by:

setExperimentDescription in interface MetadataStore

setExperimentExperimenterRef

public void setExperimentExperimenterRef(java.lang.String experimenter,
                                int experimentIndex)

Specified by:

setExperimentExperimenterRef in interface MetadataStore

setExperimentID

public void setExperimentID(java.lang.String id,
                   int experimentIndex)

Specified by:

setExperimentID in interface MetadataStore

setExperimentType

public void setExperimentType(ExperimentType type,
                     int experimentIndex)

Specified by:

setExperimentType in interface MetadataStore

setExperimenterAnnotationRef

public void setExperimenterAnnotationRef(java.lang.String annotation,
                                int experimenterIndex,
                                int annotationRefIndex)

Specified by:

setExperimenterAnnotationRef in interface MetadataStore

setExperimenterEmail

public void setExperimenterEmail(java.lang.String email,
                        int experimenterIndex)

Specified by:

setExperimenterEmail in interface MetadataStore

setExperimenterFirstName

public void setExperimenterFirstName(java.lang.String firstName,
                            int experimenterIndex)

Specified by:

setExperimenterFirstName in interface MetadataStore

setExperimenterID

public void setExperimenterID(java.lang.String id,
                     int experimenterIndex)

Specified by:

setExperimenterID in interface MetadataStore

setExperimenterInstitution

public void setExperimenterInstitution(java.lang.String institution,
                              int experimenterIndex)

Specified by:

setExperimenterInstitution in interface MetadataStore

setExperimenterLastName

public void setExperimenterLastName(java.lang.String lastName,
                           int experimenterIndex)

Specified by:

setExperimenterLastName in interface MetadataStore

setExperimenterMiddleName

public void setExperimenterMiddleName(java.lang.String middleName,
                             int experimenterIndex)

Specified by:

setExperimenterMiddleName in interface MetadataStore

setExperimenterUserName

public void setExperimenterUserName(java.lang.String userName,
                           int experimenterIndex)

Specified by:

setExperimenterUserName in interface MetadataStore

setExperimenterGroupAnnotationRef

public void setExperimenterGroupAnnotationRef(java.lang.String annotation,
                                     int experimenterGroupIndex,
                                     int annotationRefIndex)

Specified by:

setExperimenterGroupAnnotationRef in interface MetadataStore

setExperimenterGroupDescription

public void setExperimenterGroupDescription(java.lang.String description,
                                   int experimenterGroupIndex)

Specified by:

setExperimenterGroupDescription in interface MetadataStore

setExperimenterGroupExperimenterRef

public void setExperimenterGroupExperimenterRef(java.lang.String experimenter,
                                       int experimenterGroupIndex,
                                       int experimenterRefIndex)

Specified by:

setExperimenterGroupExperimenterRef in interface MetadataStore

setExperimenterGroupID

public void setExperimenterGroupID(java.lang.String id,
                          int experimenterGroupIndex)

Specified by:

setExperimenterGroupID in interface MetadataStore

setExperimenterGroupLeader

public void setExperimenterGroupLeader(java.lang.String leader,
                              int experimenterGroupIndex,
                              int leaderIndex)

Specified by:

setExperimenterGroupLeader in interface MetadataStore

setExperimenterGroupName

public void setExperimenterGroupName(java.lang.String name,
                            int experimenterGroupIndex)

Specified by:

setExperimenterGroupName in interface MetadataStore

setFilamentID

public void setFilamentID(java.lang.String id,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:

setFilamentID in interface MetadataStore

setFilamentLotNumber

public void setFilamentLotNumber(java.lang.String lotNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:

setFilamentLotNumber in interface MetadataStore

setFilamentManufacturer

public void setFilamentManufacturer(java.lang.String manufacturer,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:

setFilamentManufacturer in interface MetadataStore

setFilamentModel

public void setFilamentModel(java.lang.String model,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:

setFilamentModel in interface MetadataStore

setFilamentPower

public void setFilamentPower(java.lang.Double power,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:

setFilamentPower in interface MetadataStore

setFilamentSerialNumber

public void setFilamentSerialNumber(java.lang.String serialNumber,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:

setFilamentSerialNumber in interface MetadataStore

setFilamentType

public void setFilamentType(FilamentType type,
                   int instrumentIndex,
                   int lightSourceIndex)

Specified by:

setFilamentType in interface MetadataStore

setFileAnnotationAnnotationRef

public void setFileAnnotationAnnotationRef(java.lang.String annotation,
                                  int fileAnnotationIndex,
                                  int annotationRefIndex)

Specified by:

setFileAnnotationAnnotationRef in interface MetadataStore

setFileAnnotationAnnotator

public void setFileAnnotationAnnotator(java.lang.String annotator,
                              int fileAnnotationIndex)

Specified by:

setFileAnnotationAnnotator in interface MetadataStore

setFileAnnotationDescription

public void setFileAnnotationDescription(java.lang.String description,
                                int fileAnnotationIndex)

Specified by:

setFileAnnotationDescription in interface MetadataStore

setFileAnnotationID

public void setFileAnnotationID(java.lang.String id,
                       int fileAnnotationIndex)

Specified by:

setFileAnnotationID in interface MetadataStore

setFileAnnotationNamespace

public void setFileAnnotationNamespace(java.lang.String namespace,
                              int fileAnnotationIndex)

Specified by:

setFileAnnotationNamespace in interface MetadataStore

setFilterFilterWheel

public void setFilterFilterWheel(java.lang.String filterWheel,
                        int instrumentIndex,
                        int filterIndex)

Specified by:

setFilterFilterWheel in interface MetadataStore

setFilterID

public void setFilterID(java.lang.String id,
               int instrumentIndex,
               int filterIndex)

Specified by:

setFilterID in interface MetadataStore

setFilterLotNumber

public void setFilterLotNumber(java.lang.String lotNumber,
                      int instrumentIndex,
                      int filterIndex)

Specified by:

setFilterLotNumber in interface MetadataStore

setFilterManufacturer

public void setFilterManufacturer(java.lang.String manufacturer,
                         int instrumentIndex,
                         int filterIndex)

Specified by:

setFilterManufacturer in interface MetadataStore

setFilterModel

public void setFilterModel(java.lang.String model,
                  int instrumentIndex,
                  int filterIndex)

Specified by:

setFilterModel in interface MetadataStore

setFilterSerialNumber

public void setFilterSerialNumber(java.lang.String serialNumber,
                         int instrumentIndex,
                         int filterIndex)

Specified by:

setFilterSerialNumber in interface MetadataStore

setFilterType

public void setFilterType(FilterType type,
                 int instrumentIndex,
                 int filterIndex)

Specified by:

setFilterType in interface MetadataStore

setFilterSetDichroicRef

public void setFilterSetDichroicRef(java.lang.String dichroic,
                           int instrumentIndex,
                           int filterSetIndex)

Specified by:

setFilterSetDichroicRef in interface MetadataStore

setFilterSetEmissionFilterRef

public void setFilterSetEmissionFilterRef(java.lang.String emissionFilter,
                                 int instrumentIndex,
                                 int filterSetIndex,
                                 int emissionFilterRefIndex)

Specified by:

setFilterSetEmissionFilterRef in interface MetadataStore

setFilterSetExcitationFilterRef

public void setFilterSetExcitationFilterRef(java.lang.String excitationFilter,
                                   int instrumentIndex,
                                   int filterSetIndex,
                                   int excitationFilterRefIndex)

Specified by:

setFilterSetExcitationFilterRef in interface MetadataStore

setFilterSetID

public void setFilterSetID(java.lang.String id,
                  int instrumentIndex,
                  int filterSetIndex)

Specified by:

setFilterSetID in interface MetadataStore

setFilterSetLotNumber

public void setFilterSetLotNumber(java.lang.String lotNumber,
                         int instrumentIndex,
                         int filterSetIndex)

Specified by:

setFilterSetLotNumber in interface MetadataStore

setFilterSetManufacturer

public void setFilterSetManufacturer(java.lang.String manufacturer,
                            int instrumentIndex,
                            int filterSetIndex)

Specified by:

setFilterSetManufacturer in interface MetadataStore

setFilterSetModel

public void setFilterSetModel(java.lang.String model,
                     int instrumentIndex,
                     int filterSetIndex)

Specified by:

setFilterSetModel in interface MetadataStore

setFilterSetSerialNumber

public void setFilterSetSerialNumber(java.lang.String serialNumber,
                            int instrumentIndex,
                            int filterSetIndex)

Specified by:

setFilterSetSerialNumber in interface MetadataStore

setImageAcquisitionDate

public void setImageAcquisitionDate(Timestamp acquisitionDate,
                           int imageIndex)

Specified by:

setImageAcquisitionDate in interface MetadataStore

setImageAnnotationRef

public void setImageAnnotationRef(java.lang.String annotation,
                         int imageIndex,
                         int annotationRefIndex)

Specified by:

setImageAnnotationRef in interface MetadataStore

setImageDescription

public void setImageDescription(java.lang.String description,
                       int imageIndex)

Specified by:

setImageDescription in interface MetadataStore

setImageExperimentRef

public void setImageExperimentRef(java.lang.String experiment,
                         int imageIndex)

Specified by:

setImageExperimentRef in interface MetadataStore

setImageExperimenterGroupRef

public void setImageExperimenterGroupRef(java.lang.String experimenterGroup,
                                int imageIndex)

Specified by:

setImageExperimenterGroupRef in interface MetadataStore

setImageExperimenterRef

public void setImageExperimenterRef(java.lang.String experimenter,
                           int imageIndex)

Specified by:

setImageExperimenterRef in interface MetadataStore

setImageID

public void setImageID(java.lang.String id,
              int imageIndex)

Specified by:

setImageID in interface MetadataStore

setImageInstrumentRef

public void setImageInstrumentRef(java.lang.String instrument,
                         int imageIndex)

Specified by:

setImageInstrumentRef in interface MetadataStore

setImageMicrobeamManipulationRef

public void setImageMicrobeamManipulationRef(java.lang.String microbeamManipulation,
                                    int imageIndex,
                                    int microbeamManipulationRefIndex)

Specified by:

setImageMicrobeamManipulationRef in interface MetadataStore

setImageName

public void setImageName(java.lang.String name,
                int imageIndex)

Specified by:

setImageName in interface MetadataStore

setImageROIRef

public void setImageROIRef(java.lang.String roi,
                  int imageIndex,
                  int ROIRefIndex)

Specified by:

setImageROIRef in interface MetadataStore

setImagingEnvironmentAirPressure

public void setImagingEnvironmentAirPressure(java.lang.Double airPressure,
                                    int imageIndex)

Specified by:

setImagingEnvironmentAirPressure in interface MetadataStore

setImagingEnvironmentCO2Percent

public void setImagingEnvironmentCO2Percent(PercentFraction co2Percent,
                                   int imageIndex)

Specified by:

setImagingEnvironmentCO2Percent in interface MetadataStore

setImagingEnvironmentHumidity

public void setImagingEnvironmentHumidity(PercentFraction humidity,
                                 int imageIndex)

Specified by:

setImagingEnvironmentHumidity in interface MetadataStore

setImagingEnvironmentTemperature

public void setImagingEnvironmentTemperature(java.lang.Double temperature,
                                    int imageIndex)

Specified by:

setImagingEnvironmentTemperature in interface MetadataStore

setInstrumentID

public void setInstrumentID(java.lang.String id,
                   int instrumentIndex)

Specified by:

setInstrumentID in interface MetadataStore

setLabelFillColor

public void setLabelFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setLabelFillColor in interface MetadataStore

setLabelFillRule

public void setLabelFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setLabelFillRule in interface MetadataStore

setLabelFontFamily

public void setLabelFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setLabelFontFamily in interface MetadataStore

setLabelFontSize

public void setLabelFontSize(NonNegativeInteger fontSize,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setLabelFontSize in interface MetadataStore

setLabelFontStyle

public void setLabelFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setLabelFontStyle in interface MetadataStore

setLabelID

public void setLabelID(java.lang.String id,
              int ROIIndex,
              int shapeIndex)

Specified by:

setLabelID in interface MetadataStore

setLabelLineCap

public void setLabelLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setLabelLineCap in interface MetadataStore

setLabelLocked

public void setLabelLocked(java.lang.Boolean locked,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setLabelLocked in interface MetadataStore

setLabelStrokeColor

public void setLabelStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setLabelStrokeColor in interface MetadataStore

setLabelStrokeDashArray

public void setLabelStrokeDashArray(java.lang.String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)

Specified by:

setLabelStrokeDashArray in interface MetadataStore

setLabelStrokeWidth

public void setLabelStrokeWidth(java.lang.Double strokeWidth,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setLabelStrokeWidth in interface MetadataStore

setLabelText

public void setLabelText(java.lang.String text,
                int ROIIndex,
                int shapeIndex)

Specified by:

setLabelText in interface MetadataStore

setLabelTheC

public void setLabelTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)

Specified by:

setLabelTheC in interface MetadataStore

setLabelTheT

public void setLabelTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)

Specified by:

setLabelTheT in interface MetadataStore

setLabelTheZ

public void setLabelTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)

Specified by:

setLabelTheZ in interface MetadataStore

setLabelTransform

public void setLabelTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setLabelTransform in interface MetadataStore

setLabelVisible

public void setLabelVisible(java.lang.Boolean visible,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setLabelVisible in interface MetadataStore

setLabelX

public void setLabelX(java.lang.Double x,
             int ROIIndex,
             int shapeIndex)

Specified by:

setLabelX in interface MetadataStore

setLabelY

public void setLabelY(java.lang.Double y,
             int ROIIndex,
             int shapeIndex)

Specified by:

setLabelY in interface MetadataStore

setLaserID

public void setLaserID(java.lang.String id,
              int instrumentIndex,
              int lightSourceIndex)

Specified by:

setLaserID in interface MetadataStore

setLaserLotNumber

public void setLaserLotNumber(java.lang.String lotNumber,
                     int instrumentIndex,
                     int lightSourceIndex)

Specified by:

setLaserLotNumber in interface MetadataStore

setLaserManufacturer

public void setLaserManufacturer(java.lang.String manufacturer,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:

setLaserManufacturer in interface MetadataStore

setLaserModel

public void setLaserModel(java.lang.String model,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:

setLaserModel in interface MetadataStore

setLaserPower

public void setLaserPower(java.lang.Double power,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:

setLaserPower in interface MetadataStore

setLaserSerialNumber

public void setLaserSerialNumber(java.lang.String serialNumber,
                        int instrumentIndex,
                        int lightSourceIndex)

Specified by:

setLaserSerialNumber in interface MetadataStore

setLaserFrequencyMultiplication

public void setLaserFrequencyMultiplication(PositiveInteger frequencyMultiplication,
                                   int instrumentIndex,
                                   int lightSourceIndex)

Specified by:

setLaserFrequencyMultiplication in interface MetadataStore

setLaserLaserMedium

public void setLaserLaserMedium(LaserMedium laserMedium,
                       int instrumentIndex,
                       int lightSourceIndex)

Specified by:

setLaserLaserMedium in interface MetadataStore

setLaserPockelCell

public void setLaserPockelCell(java.lang.Boolean pockelCell,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:

setLaserPockelCell in interface MetadataStore

setLaserPulse

public void setLaserPulse(Pulse pulse,
                 int instrumentIndex,
                 int lightSourceIndex)

Specified by:

setLaserPulse in interface MetadataStore

setLaserPump

public void setLaserPump(java.lang.String pump,
                int instrumentIndex,
                int lightSourceIndex)

Specified by:

setLaserPump in interface MetadataStore

setLaserRepetitionRate

public void setLaserRepetitionRate(java.lang.Double repetitionRate,
                          int instrumentIndex,
                          int lightSourceIndex)

Specified by:

setLaserRepetitionRate in interface MetadataStore

setLaserTuneable

public void setLaserTuneable(java.lang.Boolean tuneable,
                    int instrumentIndex,
                    int lightSourceIndex)

Specified by:

setLaserTuneable in interface MetadataStore

setLaserType

public void setLaserType(LaserType type,
                int instrumentIndex,
                int lightSourceIndex)

Specified by:

setLaserType in interface MetadataStore

setLaserWavelength

public void setLaserWavelength(PositiveInteger wavelength,
                      int instrumentIndex,
                      int lightSourceIndex)

Specified by:

setLaserWavelength in interface MetadataStore

setLightEmittingDiodeID

public void setLightEmittingDiodeID(java.lang.String id,
                           int instrumentIndex,
                           int lightSourceIndex)

Specified by:

setLightEmittingDiodeID in interface MetadataStore

setLightEmittingDiodeLotNumber

public void setLightEmittingDiodeLotNumber(java.lang.String lotNumber,
                                  int instrumentIndex,
                                  int lightSourceIndex)

Specified by:

setLightEmittingDiodeLotNumber in interface MetadataStore

setLightEmittingDiodeManufacturer

public void setLightEmittingDiodeManufacturer(java.lang.String manufacturer,
                                     int instrumentIndex,
                                     int lightSourceIndex)

Specified by:

setLightEmittingDiodeManufacturer in interface MetadataStore

setLightEmittingDiodeModel

public void setLightEmittingDiodeModel(java.lang.String model,
                              int instrumentIndex,
                              int lightSourceIndex)

Specified by:

setLightEmittingDiodeModel in interface MetadataStore

setLightEmittingDiodePower

public void setLightEmittingDiodePower(java.lang.Double power,
                              int instrumentIndex,
                              int lightSourceIndex)

Specified by:

setLightEmittingDiodePower in interface MetadataStore

setLightEmittingDiodeSerialNumber

public void setLightEmittingDiodeSerialNumber(java.lang.String serialNumber,
                                     int instrumentIndex,
                                     int lightSourceIndex)

Specified by:

setLightEmittingDiodeSerialNumber in interface MetadataStore

setLightPathDichroicRef

public void setLightPathDichroicRef(java.lang.String dichroic,
                           int imageIndex,
                           int channelIndex)

Specified by:

setLightPathDichroicRef in interface MetadataStore

setLightPathEmissionFilterRef

public void setLightPathEmissionFilterRef(java.lang.String emissionFilter,
                                 int imageIndex,
                                 int channelIndex,
                                 int emissionFilterRefIndex)

Specified by:

setLightPathEmissionFilterRef in interface MetadataStore

setLightPathExcitationFilterRef

public void setLightPathExcitationFilterRef(java.lang.String excitationFilter,
                                   int imageIndex,
                                   int channelIndex,
                                   int excitationFilterRefIndex)

Specified by:

setLightPathExcitationFilterRef in interface MetadataStore

setChannelLightSourceSettingsAttenuation

public void setChannelLightSourceSettingsAttenuation(PercentFraction attenuation,
                                            int imageIndex,
                                            int channelIndex)

Specified by:

setChannelLightSourceSettingsAttenuation in interface MetadataStore

setMicrobeamManipulationLightSourceSettingsAttenuation

public void setMicrobeamManipulationLightSourceSettingsAttenuation(PercentFraction attenuation,
                                                          int experimentIndex,
                                                          int microbeamManipulationIndex,
                                                          int lightSourceSettingsIndex)

Specified by:

setMicrobeamManipulationLightSourceSettingsAttenuation in interface MetadataStore

setChannelLightSourceSettingsID

public void setChannelLightSourceSettingsID(java.lang.String id,
                                   int imageIndex,
                                   int channelIndex)

Specified by:

setChannelLightSourceSettingsID in interface MetadataStore

setMicrobeamManipulationLightSourceSettingsID

public void setMicrobeamManipulationLightSourceSettingsID(java.lang.String id,
                                                 int experimentIndex,
                                                 int microbeamManipulationIndex,
                                                 int lightSourceSettingsIndex)

Specified by:

setMicrobeamManipulationLightSourceSettingsID in interface MetadataStore

setChannelLightSourceSettingsWavelength

public void setChannelLightSourceSettingsWavelength(PositiveInteger wavelength,
                                           int imageIndex,
                                           int channelIndex)

Specified by:

setChannelLightSourceSettingsWavelength in interface MetadataStore

setMicrobeamManipulationLightSourceSettingsWavelength

public void setMicrobeamManipulationLightSourceSettingsWavelength(PositiveInteger wavelength,
                                                         int experimentIndex,
                                                         int microbeamManipulationIndex,
                                                         int lightSourceSettingsIndex)

Specified by:

setMicrobeamManipulationLightSourceSettingsWavelength in interface MetadataStore

setLineFillColor

public void setLineFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setLineFillColor in interface MetadataStore

setLineFillRule

public void setLineFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setLineFillRule in interface MetadataStore

setLineFontFamily

public void setLineFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setLineFontFamily in interface MetadataStore

setLineFontSize

public void setLineFontSize(NonNegativeInteger fontSize,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setLineFontSize in interface MetadataStore

setLineFontStyle

public void setLineFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setLineFontStyle in interface MetadataStore

setLineID

public void setLineID(java.lang.String id,
             int ROIIndex,
             int shapeIndex)

Specified by:

setLineID in interface MetadataStore

setLineLineCap

public void setLineLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setLineLineCap in interface MetadataStore

setLineLocked

public void setLineLocked(java.lang.Boolean locked,
                 int ROIIndex,
                 int shapeIndex)

Specified by:

setLineLocked in interface MetadataStore

setLineStrokeColor

public void setLineStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setLineStrokeColor in interface MetadataStore

setLineStrokeDashArray

public void setLineStrokeDashArray(java.lang.String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)

Specified by:

setLineStrokeDashArray in interface MetadataStore

setLineStrokeWidth

public void setLineStrokeWidth(java.lang.Double strokeWidth,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setLineStrokeWidth in interface MetadataStore

setLineText

public void setLineText(java.lang.String text,
               int ROIIndex,
               int shapeIndex)

Specified by:

setLineText in interface MetadataStore

setLineTheC

public void setLineTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)

Specified by:

setLineTheC in interface MetadataStore

setLineTheT

public void setLineTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)

Specified by:

setLineTheT in interface MetadataStore

setLineTheZ

public void setLineTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)

Specified by:

setLineTheZ in interface MetadataStore

setLineTransform

public void setLineTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setLineTransform in interface MetadataStore

setLineVisible

public void setLineVisible(java.lang.Boolean visible,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setLineVisible in interface MetadataStore

setLineMarkerEnd

public void setLineMarkerEnd(Marker markerEnd,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setLineMarkerEnd in interface MetadataStore

setLineMarkerStart

public void setLineMarkerStart(Marker markerStart,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setLineMarkerStart in interface MetadataStore

setLineX1

public void setLineX1(java.lang.Double x1,
             int ROIIndex,
             int shapeIndex)

Specified by:

setLineX1 in interface MetadataStore

setLineX2

public void setLineX2(java.lang.Double x2,
             int ROIIndex,
             int shapeIndex)

Specified by:

setLineX2 in interface MetadataStore

setLineY1

public void setLineY1(java.lang.Double y1,
             int ROIIndex,
             int shapeIndex)

Specified by:

setLineY1 in interface MetadataStore

setLineY2

public void setLineY2(java.lang.Double y2,
             int ROIIndex,
             int shapeIndex)

Specified by:

setLineY2 in interface MetadataStore

setListAnnotationAnnotationRef

public void setListAnnotationAnnotationRef(java.lang.String annotation,
                                  int listAnnotationIndex,
                                  int annotationRefIndex)

Specified by:

setListAnnotationAnnotationRef in interface MetadataStore

setListAnnotationAnnotator

public void setListAnnotationAnnotator(java.lang.String annotator,
                              int listAnnotationIndex)

Specified by:

setListAnnotationAnnotator in interface MetadataStore

setListAnnotationDescription

public void setListAnnotationDescription(java.lang.String description,
                                int listAnnotationIndex)

Specified by:

setListAnnotationDescription in interface MetadataStore

setListAnnotationID

public void setListAnnotationID(java.lang.String id,
                       int listAnnotationIndex)

Specified by:

setListAnnotationID in interface MetadataStore

setListAnnotationNamespace

public void setListAnnotationNamespace(java.lang.String namespace,
                              int listAnnotationIndex)

Specified by:

setListAnnotationNamespace in interface MetadataStore

setLongAnnotationAnnotationRef

public void setLongAnnotationAnnotationRef(java.lang.String annotation,
                                  int longAnnotationIndex,
                                  int annotationRefIndex)

Specified by:

setLongAnnotationAnnotationRef in interface MetadataStore

setLongAnnotationAnnotator

public void setLongAnnotationAnnotator(java.lang.String annotator,
                              int longAnnotationIndex)

Specified by:

setLongAnnotationAnnotator in interface MetadataStore

setLongAnnotationDescription

public void setLongAnnotationDescription(java.lang.String description,
                                int longAnnotationIndex)

Specified by:

setLongAnnotationDescription in interface MetadataStore

setLongAnnotationID

public void setLongAnnotationID(java.lang.String id,
                       int longAnnotationIndex)

Specified by:

setLongAnnotationID in interface MetadataStore

setLongAnnotationNamespace

public void setLongAnnotationNamespace(java.lang.String namespace,
                              int longAnnotationIndex)

Specified by:

setLongAnnotationNamespace in interface MetadataStore

setLongAnnotationValue

public void setLongAnnotationValue(java.lang.Long value,
                          int longAnnotationIndex)

Specified by:

setLongAnnotationValue in interface MetadataStore

setMaskFillColor

public void setMaskFillColor(Color fillColor,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setMaskFillColor in interface MetadataStore

setMaskFillRule

public void setMaskFillRule(FillRule fillRule,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setMaskFillRule in interface MetadataStore

setMaskFontFamily

public void setMaskFontFamily(FontFamily fontFamily,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setMaskFontFamily in interface MetadataStore

setMaskFontSize

public void setMaskFontSize(NonNegativeInteger fontSize,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setMaskFontSize in interface MetadataStore

setMaskFontStyle

public void setMaskFontStyle(FontStyle fontStyle,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setMaskFontStyle in interface MetadataStore

setMaskID

public void setMaskID(java.lang.String id,
             int ROIIndex,
             int shapeIndex)

Specified by:

setMaskID in interface MetadataStore

setMaskLineCap

public void setMaskLineCap(LineCap lineCap,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setMaskLineCap in interface MetadataStore

setMaskLocked

public void setMaskLocked(java.lang.Boolean locked,
                 int ROIIndex,
                 int shapeIndex)

Specified by:

setMaskLocked in interface MetadataStore

setMaskStrokeColor

public void setMaskStrokeColor(Color strokeColor,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setMaskStrokeColor in interface MetadataStore

setMaskStrokeDashArray

public void setMaskStrokeDashArray(java.lang.String strokeDashArray,
                          int ROIIndex,
                          int shapeIndex)

Specified by:

setMaskStrokeDashArray in interface MetadataStore

setMaskStrokeWidth

public void setMaskStrokeWidth(java.lang.Double strokeWidth,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setMaskStrokeWidth in interface MetadataStore

setMaskText

public void setMaskText(java.lang.String text,
               int ROIIndex,
               int shapeIndex)

Specified by:

setMaskText in interface MetadataStore

setMaskTheC

public void setMaskTheC(NonNegativeInteger theC,
               int ROIIndex,
               int shapeIndex)

Specified by:

setMaskTheC in interface MetadataStore

setMaskTheT

public void setMaskTheT(NonNegativeInteger theT,
               int ROIIndex,
               int shapeIndex)

Specified by:

setMaskTheT in interface MetadataStore

setMaskTheZ

public void setMaskTheZ(NonNegativeInteger theZ,
               int ROIIndex,
               int shapeIndex)

Specified by:

setMaskTheZ in interface MetadataStore

setMaskTransform

public void setMaskTransform(AffineTransform transform,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setMaskTransform in interface MetadataStore

setMaskVisible

public void setMaskVisible(java.lang.Boolean visible,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setMaskVisible in interface MetadataStore

setMaskHeight

public void setMaskHeight(java.lang.Double height,
                 int ROIIndex,
                 int shapeIndex)

Specified by:

setMaskHeight in interface MetadataStore

setMaskWidth

public void setMaskWidth(java.lang.Double width,
                int ROIIndex,
                int shapeIndex)

Specified by:

setMaskWidth in interface MetadataStore

setMaskX

public void setMaskX(java.lang.Double x,
            int ROIIndex,
            int shapeIndex)

Specified by:

setMaskX in interface MetadataStore

setMaskY

public void setMaskY(java.lang.Double y,
            int ROIIndex,
            int shapeIndex)

Specified by:

setMaskY in interface MetadataStore

setMicrobeamManipulationDescription

public void setMicrobeamManipulationDescription(java.lang.String description,
                                       int experimentIndex,
                                       int microbeamManipulationIndex)

Specified by:

setMicrobeamManipulationDescription in interface MetadataStore

setMicrobeamManipulationExperimenterRef

public void setMicrobeamManipulationExperimenterRef(java.lang.String experimenter,
                                           int experimentIndex,
                                           int microbeamManipulationIndex)

Specified by:

setMicrobeamManipulationExperimenterRef in interface MetadataStore

setMicrobeamManipulationID

public void setMicrobeamManipulationID(java.lang.String id,
                              int experimentIndex,
                              int microbeamManipulationIndex)

Specified by:

setMicrobeamManipulationID in interface MetadataStore

setMicrobeamManipulationROIRef

public void setMicrobeamManipulationROIRef(java.lang.String roi,
                                  int experimentIndex,
                                  int microbeamManipulationIndex,
                                  int ROIRefIndex)

Specified by:

setMicrobeamManipulationROIRef in interface MetadataStore

setMicrobeamManipulationType

public void setMicrobeamManipulationType(MicrobeamManipulationType type,
                                int experimentIndex,
                                int microbeamManipulationIndex)

Specified by:

setMicrobeamManipulationType in interface MetadataStore

setMicroscopeLotNumber

public void setMicroscopeLotNumber(java.lang.String lotNumber,
                          int instrumentIndex)

Specified by:

setMicroscopeLotNumber in interface MetadataStore

setMicroscopeManufacturer

public void setMicroscopeManufacturer(java.lang.String manufacturer,
                             int instrumentIndex)

Specified by:

setMicroscopeManufacturer in interface MetadataStore

setMicroscopeModel

public void setMicroscopeModel(java.lang.String model,
                      int instrumentIndex)

Specified by:

setMicroscopeModel in interface MetadataStore

setMicroscopeSerialNumber

public void setMicroscopeSerialNumber(java.lang.String serialNumber,
                             int instrumentIndex)

Specified by:

setMicroscopeSerialNumber in interface MetadataStore

setMicroscopeType

public void setMicroscopeType(MicroscopeType type,
                     int instrumentIndex)

Specified by:

setMicroscopeType in interface MetadataStore

setObjectiveCalibratedMagnification

public void setObjectiveCalibratedMagnification(java.lang.Double calibratedMagnification,
                                       int instrumentIndex,
                                       int objectiveIndex)

Specified by:

setObjectiveCalibratedMagnification in interface MetadataStore

setObjectiveCorrection

public void setObjectiveCorrection(Correction correction,
                          int instrumentIndex,
                          int objectiveIndex)

Specified by:

setObjectiveCorrection in interface MetadataStore

setObjectiveID

public void setObjectiveID(java.lang.String id,
                  int instrumentIndex,
                  int objectiveIndex)

Specified by:

setObjectiveID in interface MetadataStore

setObjectiveImmersion

public void setObjectiveImmersion(Immersion immersion,
                         int instrumentIndex,
                         int objectiveIndex)

Specified by:

setObjectiveImmersion in interface MetadataStore

setObjectiveIris

public void setObjectiveIris(java.lang.Boolean iris,
                    int instrumentIndex,
                    int objectiveIndex)

Specified by:

setObjectiveIris in interface MetadataStore

setObjectiveLensNA

public void setObjectiveLensNA(java.lang.Double lensNA,
                      int instrumentIndex,
                      int objectiveIndex)

Specified by:

setObjectiveLensNA in interface MetadataStore

setObjectiveLotNumber

public void setObjectiveLotNumber(java.lang.String lotNumber,
                         int instrumentIndex,
                         int objectiveIndex)

Specified by:

setObjectiveLotNumber in interface MetadataStore

setObjectiveManufacturer

public void setObjectiveManufacturer(java.lang.String manufacturer,
                            int instrumentIndex,
                            int objectiveIndex)

Specified by:

setObjectiveManufacturer in interface MetadataStore

setObjectiveModel

public void setObjectiveModel(java.lang.String model,
                     int instrumentIndex,
                     int objectiveIndex)

Specified by:

setObjectiveModel in interface MetadataStore

setObjectiveNominalMagnification

public void setObjectiveNominalMagnification(java.lang.Double nominalMagnification,
                                    int instrumentIndex,
                                    int objectiveIndex)

Specified by:

setObjectiveNominalMagnification in interface MetadataStore

setObjectiveSerialNumber

public void setObjectiveSerialNumber(java.lang.String serialNumber,
                            int instrumentIndex,
                            int objectiveIndex)

Specified by:

setObjectiveSerialNumber in interface MetadataStore

setObjectiveWorkingDistance

public void setObjectiveWorkingDistance(java.lang.Double workingDistance,
                               int instrumentIndex,
                               int objectiveIndex)

Specified by:

setObjectiveWorkingDistance in interface MetadataStore

setObjectiveSettingsCorrectionCollar

public void setObjectiveSettingsCorrectionCollar(java.lang.Double correctionCollar,
                                        int imageIndex)

Specified by:

setObjectiveSettingsCorrectionCollar in interface MetadataStore

setObjectiveSettingsID

public void setObjectiveSettingsID(java.lang.String id,
                          int imageIndex)

Specified by:

setObjectiveSettingsID in interface MetadataStore

setObjectiveSettingsMedium

public void setObjectiveSettingsMedium(Medium medium,
                              int imageIndex)

Specified by:

setObjectiveSettingsMedium in interface MetadataStore

setObjectiveSettingsRefractiveIndex

public void setObjectiveSettingsRefractiveIndex(java.lang.Double refractiveIndex,
                                       int imageIndex)

Specified by:

setObjectiveSettingsRefractiveIndex in interface MetadataStore

setPixelsAnnotationRef

public void setPixelsAnnotationRef(java.lang.String annotation,
                          int imageIndex,
                          int annotationRefIndex)

Specified by:

setPixelsAnnotationRef in interface MetadataStore

setPixelsBigEndian

public void setPixelsBigEndian(java.lang.Boolean bigEndian,
                      int imageIndex)

Specified by:

setPixelsBigEndian in interface MetadataStore

setPixelsDimensionOrder

public void setPixelsDimensionOrder(DimensionOrder dimensionOrder,
                           int imageIndex)

Specified by:

setPixelsDimensionOrder in interface MetadataStore

setPixelsID

public void setPixelsID(java.lang.String id,
               int imageIndex)

Specified by:

setPixelsID in interface MetadataStore

setPixelsInterleaved

public void setPixelsInterleaved(java.lang.Boolean interleaved,
                        int imageIndex)

Specified by:

setPixelsInterleaved in interface MetadataStore

setPixelsPhysicalSizeX

public void setPixelsPhysicalSizeX(PositiveFloat physicalSizeX,
                          int imageIndex)

Specified by:

setPixelsPhysicalSizeX in interface MetadataStore

setPixelsPhysicalSizeY

public void setPixelsPhysicalSizeY(PositiveFloat physicalSizeY,
                          int imageIndex)

Specified by:

setPixelsPhysicalSizeY in interface MetadataStore

setPixelsPhysicalSizeZ

public void setPixelsPhysicalSizeZ(PositiveFloat physicalSizeZ,
                          int imageIndex)

Specified by:

setPixelsPhysicalSizeZ in interface MetadataStore

setPixelsSignificantBits

public void setPixelsSignificantBits(PositiveInteger significantBits,
                            int imageIndex)

Specified by:

setPixelsSignificantBits in interface MetadataStore

setPixelsSizeC

public void setPixelsSizeC(PositiveInteger sizeC,
                  int imageIndex)

Specified by:

setPixelsSizeC in interface MetadataStore

setPixelsSizeT

public void setPixelsSizeT(PositiveInteger sizeT,
                  int imageIndex)

Specified by:

setPixelsSizeT in interface MetadataStore

setPixelsSizeX

public void setPixelsSizeX(PositiveInteger sizeX,
                  int imageIndex)

Specified by:

setPixelsSizeX in interface MetadataStore

setPixelsSizeY

public void setPixelsSizeY(PositiveInteger sizeY,
                  int imageIndex)

Specified by:

setPixelsSizeY in interface MetadataStore

setPixelsSizeZ

public void setPixelsSizeZ(PositiveInteger sizeZ,
                  int imageIndex)

Specified by:

setPixelsSizeZ in interface MetadataStore

setPixelsTimeIncrement

public void setPixelsTimeIncrement(java.lang.Double timeIncrement,
                          int imageIndex)

Specified by:

setPixelsTimeIncrement in interface MetadataStore

setPixelsType

public void setPixelsType(PixelType type,
                 int imageIndex)

Specified by:

setPixelsType in interface MetadataStore

setPlaneAnnotationRef

public void setPlaneAnnotationRef(java.lang.String annotation,
                         int imageIndex,
                         int planeIndex,
                         int annotationRefIndex)

Specified by:

setPlaneAnnotationRef in interface MetadataStore

setPlaneDeltaT

public void setPlaneDeltaT(java.lang.Double deltaT,
                  int imageIndex,
                  int planeIndex)

Specified by:

setPlaneDeltaT in interface MetadataStore

setPlaneExposureTime

public void setPlaneExposureTime(java.lang.Double exposureTime,
                        int imageIndex,
                        int planeIndex)

Specified by:

setPlaneExposureTime in interface MetadataStore

setPlaneHashSHA1

public void setPlaneHashSHA1(java.lang.String hashSHA1,
                    int imageIndex,
                    int planeIndex)

Specified by:

setPlaneHashSHA1 in interface MetadataStore

setPlanePositionX

public void setPlanePositionX(java.lang.Double positionX,
                     int imageIndex,
                     int planeIndex)

Specified by:

setPlanePositionX in interface MetadataStore

setPlanePositionY

public void setPlanePositionY(java.lang.Double positionY,
                     int imageIndex,
                     int planeIndex)

Specified by:

setPlanePositionY in interface MetadataStore

setPlanePositionZ

public void setPlanePositionZ(java.lang.Double positionZ,
                     int imageIndex,
                     int planeIndex)

Specified by:

setPlanePositionZ in interface MetadataStore

setPlaneTheC

public void setPlaneTheC(NonNegativeInteger theC,
                int imageIndex,
                int planeIndex)

Specified by:

setPlaneTheC in interface MetadataStore

setPlaneTheT

public void setPlaneTheT(NonNegativeInteger theT,
                int imageIndex,
                int planeIndex)

Specified by:

setPlaneTheT in interface MetadataStore

setPlaneTheZ

public void setPlaneTheZ(NonNegativeInteger theZ,
                int imageIndex,
                int planeIndex)

Specified by:

setPlaneTheZ in interface MetadataStore

setPlateAnnotationRef

public void setPlateAnnotationRef(java.lang.String annotation,
                         int plateIndex,
                         int annotationRefIndex)

Specified by:

setPlateAnnotationRef in interface MetadataStore

setPlateColumnNamingConvention

public void setPlateColumnNamingConvention(NamingConvention columnNamingConvention,
                                  int plateIndex)

Specified by:

setPlateColumnNamingConvention in interface MetadataStore

setPlateColumns

public void setPlateColumns(PositiveInteger columns,
                   int plateIndex)

Specified by:

setPlateColumns in interface MetadataStore

setPlateDescription

public void setPlateDescription(java.lang.String description,
                       int plateIndex)

Specified by:

setPlateDescription in interface MetadataStore

setPlateExternalIdentifier

public void setPlateExternalIdentifier(java.lang.String externalIdentifier,
                              int plateIndex)

Specified by:

setPlateExternalIdentifier in interface MetadataStore

setPlateFieldIndex

public void setPlateFieldIndex(NonNegativeInteger fieldIndex,
                      int plateIndex)

Specified by:

setPlateFieldIndex in interface MetadataStore

setPlateID

public void setPlateID(java.lang.String id,
              int plateIndex)

Specified by:

setPlateID in interface MetadataStore

setPlateName

public void setPlateName(java.lang.String name,
                int plateIndex)

Specified by:

setPlateName in interface MetadataStore

setPlateRowNamingConvention

public void setPlateRowNamingConvention(NamingConvention rowNamingConvention,
                               int plateIndex)

Specified by:

setPlateRowNamingConvention in interface MetadataStore

setPlateRows

public void setPlateRows(PositiveInteger rows,
                int plateIndex)

Specified by:

setPlateRows in interface MetadataStore

setPlateStatus

public void setPlateStatus(java.lang.String status,
                  int plateIndex)

Specified by:

setPlateStatus in interface MetadataStore

setPlateWellOriginX

public void setPlateWellOriginX(java.lang.Double wellOriginX,
                       int plateIndex)

Specified by:

setPlateWellOriginX in interface MetadataStore

setPlateWellOriginY

public void setPlateWellOriginY(java.lang.Double wellOriginY,
                       int plateIndex)

Specified by:

setPlateWellOriginY in interface MetadataStore

setPlateAcquisitionAnnotationRef

public void setPlateAcquisitionAnnotationRef(java.lang.String annotation,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int annotationRefIndex)

Specified by:

setPlateAcquisitionAnnotationRef in interface MetadataStore

setPlateAcquisitionDescription

public void setPlateAcquisitionDescription(java.lang.String description,
                                  int plateIndex,
                                  int plateAcquisitionIndex)

Specified by:

setPlateAcquisitionDescription in interface MetadataStore

setPlateAcquisitionEndTime

public void setPlateAcquisitionEndTime(Timestamp endTime,
                              int plateIndex,
                              int plateAcquisitionIndex)

Specified by:

setPlateAcquisitionEndTime in interface MetadataStore

setPlateAcquisitionID

public void setPlateAcquisitionID(java.lang.String id,
                         int plateIndex,
                         int plateAcquisitionIndex)

Specified by:

setPlateAcquisitionID in interface MetadataStore

setPlateAcquisitionMaximumFieldCount

public void setPlateAcquisitionMaximumFieldCount(PositiveInteger maximumFieldCount,
                                        int plateIndex,
                                        int plateAcquisitionIndex)

Specified by:

setPlateAcquisitionMaximumFieldCount in interface MetadataStore

setPlateAcquisitionName

public void setPlateAcquisitionName(java.lang.String name,
                           int plateIndex,
                           int plateAcquisitionIndex)

Specified by:

setPlateAcquisitionName in interface MetadataStore

setPlateAcquisitionStartTime

public void setPlateAcquisitionStartTime(Timestamp startTime,
                                int plateIndex,
                                int plateAcquisitionIndex)

Specified by:

setPlateAcquisitionStartTime in interface MetadataStore

setPlateAcquisitionWellSampleRef

public void setPlateAcquisitionWellSampleRef(java.lang.String wellSample,
                                    int plateIndex,
                                    int plateAcquisitionIndex,
                                    int wellSampleRefIndex)

Specified by:

setPlateAcquisitionWellSampleRef in interface MetadataStore

setPointFillColor

public void setPointFillColor(Color fillColor,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setPointFillColor in interface MetadataStore

setPointFillRule

public void setPointFillRule(FillRule fillRule,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setPointFillRule in interface MetadataStore

setPointFontFamily

public void setPointFontFamily(FontFamily fontFamily,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setPointFontFamily in interface MetadataStore

setPointFontSize

public void setPointFontSize(NonNegativeInteger fontSize,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setPointFontSize in interface MetadataStore

setPointFontStyle

public void setPointFontStyle(FontStyle fontStyle,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setPointFontStyle in interface MetadataStore

setPointID

public void setPointID(java.lang.String id,
              int ROIIndex,
              int shapeIndex)

Specified by:

setPointID in interface MetadataStore

setPointLineCap

public void setPointLineCap(LineCap lineCap,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setPointLineCap in interface MetadataStore

setPointLocked

public void setPointLocked(java.lang.Boolean locked,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setPointLocked in interface MetadataStore

setPointStrokeColor

public void setPointStrokeColor(Color strokeColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setPointStrokeColor in interface MetadataStore

setPointStrokeDashArray

public void setPointStrokeDashArray(java.lang.String strokeDashArray,
                           int ROIIndex,
                           int shapeIndex)

Specified by:

setPointStrokeDashArray in interface MetadataStore

setPointStrokeWidth

public void setPointStrokeWidth(java.lang.Double strokeWidth,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setPointStrokeWidth in interface MetadataStore

setPointText

public void setPointText(java.lang.String text,
                int ROIIndex,
                int shapeIndex)

Specified by:

setPointText in interface MetadataStore

setPointTheC

public void setPointTheC(NonNegativeInteger theC,
                int ROIIndex,
                int shapeIndex)

Specified by:

setPointTheC in interface MetadataStore

setPointTheT

public void setPointTheT(NonNegativeInteger theT,
                int ROIIndex,
                int shapeIndex)

Specified by:

setPointTheT in interface MetadataStore

setPointTheZ

public void setPointTheZ(NonNegativeInteger theZ,
                int ROIIndex,
                int shapeIndex)

Specified by:

setPointTheZ in interface MetadataStore

setPointTransform

public void setPointTransform(AffineTransform transform,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setPointTransform in interface MetadataStore

setPointVisible

public void setPointVisible(java.lang.Boolean visible,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setPointVisible in interface MetadataStore

setPointX

public void setPointX(java.lang.Double x,
             int ROIIndex,
             int shapeIndex)

Specified by:

setPointX in interface MetadataStore

setPointY

public void setPointY(java.lang.Double y,
             int ROIIndex,
             int shapeIndex)

Specified by:

setPointY in interface MetadataStore

setPolygonFillColor

public void setPolygonFillColor(Color fillColor,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setPolygonFillColor in interface MetadataStore

setPolygonFillRule

public void setPolygonFillRule(FillRule fillRule,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setPolygonFillRule in interface MetadataStore

setPolygonFontFamily

public void setPolygonFontFamily(FontFamily fontFamily,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setPolygonFontFamily in interface MetadataStore

setPolygonFontSize

public void setPolygonFontSize(NonNegativeInteger fontSize,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setPolygonFontSize in interface MetadataStore

setPolygonFontStyle

public void setPolygonFontStyle(FontStyle fontStyle,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setPolygonFontStyle in interface MetadataStore

setPolygonID

public void setPolygonID(java.lang.String id,
                int ROIIndex,
                int shapeIndex)

Specified by:

setPolygonID in interface MetadataStore

setPolygonLineCap

public void setPolygonLineCap(LineCap lineCap,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setPolygonLineCap in interface MetadataStore

setPolygonLocked

public void setPolygonLocked(java.lang.Boolean locked,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setPolygonLocked in interface MetadataStore

setPolygonStrokeColor

public void setPolygonStrokeColor(Color strokeColor,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setPolygonStrokeColor in interface MetadataStore

setPolygonStrokeDashArray

public void setPolygonStrokeDashArray(java.lang.String strokeDashArray,
                             int ROIIndex,
                             int shapeIndex)

Specified by:

setPolygonStrokeDashArray in interface MetadataStore

setPolygonStrokeWidth

public void setPolygonStrokeWidth(java.lang.Double strokeWidth,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setPolygonStrokeWidth in interface MetadataStore

setPolygonText

public void setPolygonText(java.lang.String text,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setPolygonText in interface MetadataStore

setPolygonTheC

public void setPolygonTheC(NonNegativeInteger theC,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setPolygonTheC in interface MetadataStore

setPolygonTheT

public void setPolygonTheT(NonNegativeInteger theT,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setPolygonTheT in interface MetadataStore

setPolygonTheZ

public void setPolygonTheZ(NonNegativeInteger theZ,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setPolygonTheZ in interface MetadataStore

setPolygonTransform

public void setPolygonTransform(AffineTransform transform,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setPolygonTransform in interface MetadataStore

setPolygonVisible

public void setPolygonVisible(java.lang.Boolean visible,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setPolygonVisible in interface MetadataStore

setPolygonPoints

public void setPolygonPoints(java.lang.String points,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setPolygonPoints in interface MetadataStore

setPolylineFillColor

public void setPolylineFillColor(Color fillColor,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setPolylineFillColor in interface MetadataStore

setPolylineFillRule

public void setPolylineFillRule(FillRule fillRule,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setPolylineFillRule in interface MetadataStore

setPolylineFontFamily

public void setPolylineFontFamily(FontFamily fontFamily,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setPolylineFontFamily in interface MetadataStore

setPolylineFontSize

public void setPolylineFontSize(NonNegativeInteger fontSize,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setPolylineFontSize in interface MetadataStore

setPolylineFontStyle

public void setPolylineFontStyle(FontStyle fontStyle,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setPolylineFontStyle in interface MetadataStore

setPolylineID

public void setPolylineID(java.lang.String id,
                 int ROIIndex,
                 int shapeIndex)

Specified by:

setPolylineID in interface MetadataStore

setPolylineLineCap

public void setPolylineLineCap(LineCap lineCap,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setPolylineLineCap in interface MetadataStore

setPolylineLocked

public void setPolylineLocked(java.lang.Boolean locked,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setPolylineLocked in interface MetadataStore

setPolylineStrokeColor

public void setPolylineStrokeColor(Color strokeColor,
                          int ROIIndex,
                          int shapeIndex)

Specified by:

setPolylineStrokeColor in interface MetadataStore

setPolylineStrokeDashArray

public void setPolylineStrokeDashArray(java.lang.String strokeDashArray,
                              int ROIIndex,
                              int shapeIndex)

Specified by:

setPolylineStrokeDashArray in interface MetadataStore

setPolylineStrokeWidth

public void setPolylineStrokeWidth(java.lang.Double strokeWidth,
                          int ROIIndex,
                          int shapeIndex)

Specified by:

setPolylineStrokeWidth in interface MetadataStore

setPolylineText

public void setPolylineText(java.lang.String text,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setPolylineText in interface MetadataStore

setPolylineTheC

public void setPolylineTheC(NonNegativeInteger theC,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setPolylineTheC in interface MetadataStore

setPolylineTheT

public void setPolylineTheT(NonNegativeInteger theT,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setPolylineTheT in interface MetadataStore

setPolylineTheZ

public void setPolylineTheZ(NonNegativeInteger theZ,
                   int ROIIndex,
                   int shapeIndex)

Specified by:

setPolylineTheZ in interface MetadataStore

setPolylineTransform

public void setPolylineTransform(AffineTransform transform,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setPolylineTransform in interface MetadataStore

setPolylineVisible

public void setPolylineVisible(java.lang.Boolean visible,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setPolylineVisible in interface MetadataStore

setPolylineMarkerEnd

public void setPolylineMarkerEnd(Marker markerEnd,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setPolylineMarkerEnd in interface MetadataStore

setPolylineMarkerStart

public void setPolylineMarkerStart(Marker markerStart,
                          int ROIIndex,
                          int shapeIndex)

Specified by:

setPolylineMarkerStart in interface MetadataStore

setPolylinePoints

public void setPolylinePoints(java.lang.String points,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setPolylinePoints in interface MetadataStore

setProjectAnnotationRef

public void setProjectAnnotationRef(java.lang.String annotation,
                           int projectIndex,
                           int annotationRefIndex)

Specified by:

setProjectAnnotationRef in interface MetadataStore

setProjectDatasetRef

public void setProjectDatasetRef(java.lang.String dataset,
                        int projectIndex,
                        int datasetRefIndex)

Specified by:

setProjectDatasetRef in interface MetadataStore

setProjectDescription

public void setProjectDescription(java.lang.String description,
                         int projectIndex)

Specified by:

setProjectDescription in interface MetadataStore

setProjectExperimenterGroupRef

public void setProjectExperimenterGroupRef(java.lang.String experimenterGroup,
                                  int projectIndex)

Specified by:

setProjectExperimenterGroupRef in interface MetadataStore

setProjectExperimenterRef

public void setProjectExperimenterRef(java.lang.String experimenter,
                             int projectIndex)

Specified by:

setProjectExperimenterRef in interface MetadataStore

setProjectID

public void setProjectID(java.lang.String id,
                int projectIndex)

Specified by:

setProjectID in interface MetadataStore

setProjectName

public void setProjectName(java.lang.String name,
                  int projectIndex)

Specified by:

setProjectName in interface MetadataStore

setROIAnnotationRef

public void setROIAnnotationRef(java.lang.String annotation,
                       int ROIIndex,
                       int annotationRefIndex)

Specified by:

setROIAnnotationRef in interface MetadataStore

setROIDescription

public void setROIDescription(java.lang.String description,
                     int ROIIndex)

Specified by:

setROIDescription in interface MetadataStore

setROIID

public void setROIID(java.lang.String id,
            int ROIIndex)

Specified by:

setROIID in interface MetadataStore

setROIName

public void setROIName(java.lang.String name,
              int ROIIndex)

Specified by:

setROIName in interface MetadataStore

setROINamespace

public void setROINamespace(java.lang.String namespace,
                   int ROIIndex)

Specified by:

setROINamespace in interface MetadataStore

setReagentAnnotationRef

public void setReagentAnnotationRef(java.lang.String annotation,
                           int screenIndex,
                           int reagentIndex,
                           int annotationRefIndex)

Specified by:

setReagentAnnotationRef in interface MetadataStore

setReagentDescription

public void setReagentDescription(java.lang.String description,
                         int screenIndex,
                         int reagentIndex)

Specified by:

setReagentDescription in interface MetadataStore

setReagentID

public void setReagentID(java.lang.String id,
                int screenIndex,
                int reagentIndex)

Specified by:

setReagentID in interface MetadataStore

setReagentName

public void setReagentName(java.lang.String name,
                  int screenIndex,
                  int reagentIndex)

Specified by:

setReagentName in interface MetadataStore

setReagentReagentIdentifier

public void setReagentReagentIdentifier(java.lang.String reagentIdentifier,
                               int screenIndex,
                               int reagentIndex)

Specified by:

setReagentReagentIdentifier in interface MetadataStore

setRectangleFillColor

public void setRectangleFillColor(Color fillColor,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setRectangleFillColor in interface MetadataStore

setRectangleFillRule

public void setRectangleFillRule(FillRule fillRule,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setRectangleFillRule in interface MetadataStore

setRectangleFontFamily

public void setRectangleFontFamily(FontFamily fontFamily,
                          int ROIIndex,
                          int shapeIndex)

Specified by:

setRectangleFontFamily in interface MetadataStore

setRectangleFontSize

public void setRectangleFontSize(NonNegativeInteger fontSize,
                        int ROIIndex,
                        int shapeIndex)

Specified by:

setRectangleFontSize in interface MetadataStore

setRectangleFontStyle

public void setRectangleFontStyle(FontStyle fontStyle,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setRectangleFontStyle in interface MetadataStore

setRectangleID

public void setRectangleID(java.lang.String id,
                  int ROIIndex,
                  int shapeIndex)

Specified by:

setRectangleID in interface MetadataStore

setRectangleLineCap

public void setRectangleLineCap(LineCap lineCap,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setRectangleLineCap in interface MetadataStore

setRectangleLocked

public void setRectangleLocked(java.lang.Boolean locked,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setRectangleLocked in interface MetadataStore

setRectangleStrokeColor

public void setRectangleStrokeColor(Color strokeColor,
                           int ROIIndex,
                           int shapeIndex)

Specified by:

setRectangleStrokeColor in interface MetadataStore

setRectangleStrokeDashArray

public void setRectangleStrokeDashArray(java.lang.String strokeDashArray,
                               int ROIIndex,
                               int shapeIndex)

Specified by:

setRectangleStrokeDashArray in interface MetadataStore

setRectangleStrokeWidth

public void setRectangleStrokeWidth(java.lang.Double strokeWidth,
                           int ROIIndex,
                           int shapeIndex)

Specified by:

setRectangleStrokeWidth in interface MetadataStore

setRectangleText

public void setRectangleText(java.lang.String text,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setRectangleText in interface MetadataStore

setRectangleTheC

public void setRectangleTheC(NonNegativeInteger theC,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setRectangleTheC in interface MetadataStore

setRectangleTheT

public void setRectangleTheT(NonNegativeInteger theT,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setRectangleTheT in interface MetadataStore

setRectangleTheZ

public void setRectangleTheZ(NonNegativeInteger theZ,
                    int ROIIndex,
                    int shapeIndex)

Specified by:

setRectangleTheZ in interface MetadataStore

setRectangleTransform

public void setRectangleTransform(AffineTransform transform,
                         int ROIIndex,
                         int shapeIndex)

Specified by:

setRectangleTransform in interface MetadataStore

setRectangleVisible

public void setRectangleVisible(java.lang.Boolean visible,
                       int ROIIndex,
                       int shapeIndex)

Specified by:

setRectangleVisible in interface MetadataStore

setRectangleHeight

public void setRectangleHeight(java.lang.Double height,
                      int ROIIndex,
                      int shapeIndex)

Specified by:

setRectangleHeight in interface MetadataStore

setRectangleWidth

public void setRectangleWidth(java.lang.Double width,
                     int ROIIndex,
                     int shapeIndex)

Specified by:

setRectangleWidth in interface MetadataStore

setRectangleX

public void setRectangleX(java.lang.Double x,
                 int ROIIndex,
                 int shapeIndex)

Specified by:

setRectangleX in interface MetadataStore

setRectangleY

public void setRectangleY(java.lang.Double y,
                 int ROIIndex,
                 int shapeIndex)

Specified by:

setRectangleY in interface MetadataStore

setRightsRightsHeld

public void setRightsRightsHeld(java.lang.String rightsHeld)

Specified by:

setRightsRightsHeld in interface MetadataStore

setRightsRightsHolder

public void setRightsRightsHolder(java.lang.String rightsHolder)

Specified by:

setRightsRightsHolder in interface MetadataStore

setScreenAnnotationRef

public void setScreenAnnotationRef(java.lang.String annotation,
                          int screenIndex,
                          int annotationRefIndex)

Specified by:

setScreenAnnotationRef in interface MetadataStore

setScreenDescription

public void setScreenDescription(java.lang.String description,
                        int screenIndex)

Specified by:

setScreenDescription in interface MetadataStore

setScreenID

public void setScreenID(java.lang.String id,
               int screenIndex)

Specified by:

setScreenID in interface MetadataStore

setScreenName

public void setScreenName(java.lang.String name,
                 int screenIndex)

Specified by:

setScreenName in interface MetadataStore

setScreenPlateRef

public void setScreenPlateRef(java.lang.String plate,
                     int screenIndex,
                     int plateRefIndex)

Specified by:

setScreenPlateRef in interface MetadataStore

setScreenProtocolDescription

public void setScreenProtocolDescription(java.lang.String protocolDescription,
                                int screenIndex)

Specified by:

setScreenProtocolDescription in interface MetadataStore

setScreenProtocolIdentifier

public void setScreenProtocolIdentifier(java.lang.String protocolIdentifier,
                               int screenIndex)

Specified by:

setScreenProtocolIdentifier in interface MetadataStore

setScreenReagentSetDescription

public void setScreenReagentSetDescription(java.lang.String reagentSetDescription,
                                  int screenIndex)

Specified by:

setScreenReagentSetDescription in interface MetadataStore

setScreenReagentSetIdentifier

public void setScreenReagentSetIdentifier(java.lang.String reagentSetIdentifier,
                                 int screenIndex)

Specified by:

setScreenReagentSetIdentifier in interface MetadataStore

setScreenType

public void setScreenType(java.lang.String type,
                 int screenIndex)

Specified by:

setScreenType in interface MetadataStore

setStageLabelName

public void setStageLabelName(java.lang.String name,
                     int imageIndex)

Specified by:

setStageLabelName in interface MetadataStore

setStageLabelX

public void setStageLabelX(java.lang.Double x,
                  int imageIndex)

Specified by:

setStageLabelX in interface MetadataStore

setStageLabelY

public void setStageLabelY(java.lang.Double y,
                  int imageIndex)

Specified by:

setStageLabelY in interface MetadataStore

setStageLabelZ

public void setStageLabelZ(java.lang.Double z,
                  int imageIndex)

Specified by:

setStageLabelZ in interface MetadataStore

setTagAnnotationAnnotationRef

public void setTagAnnotationAnnotationRef(java.lang.String annotation,
                                 int tagAnnotationIndex,
                                 int annotationRefIndex)

Specified by:

setTagAnnotationAnnotationRef in interface MetadataStore

setTagAnnotationAnnotator

public void setTagAnnotationAnnotator(java.lang.String annotator,
                             int tagAnnotationIndex)

Specified by:

setTagAnnotationAnnotator in interface MetadataStore

setTagAnnotationDescription

public void setTagAnnotationDescription(java.lang.String description,
                               int tagAnnotationIndex)

Specified by:

setTagAnnotationDescription in interface MetadataStore

setTagAnnotationID

public void setTagAnnotationID(java.lang.String id,
                      int tagAnnotationIndex)

Specified by:

setTagAnnotationID in interface MetadataStore

setTagAnnotationNamespace

public void setTagAnnotationNamespace(java.lang.String namespace,
                             int tagAnnotationIndex)

Specified by:

setTagAnnotationNamespace in interface MetadataStore

setTagAnnotationValue

public void setTagAnnotationValue(java.lang.String value,
                         int tagAnnotationIndex)

Specified by:

setTagAnnotationValue in interface MetadataStore

setTermAnnotationAnnotationRef

public void setTermAnnotationAnnotationRef(java.lang.String annotation,
                                  int termAnnotationIndex,
                                  int annotationRefIndex)

Specified by:

setTermAnnotationAnnotationRef in interface MetadataStore

setTermAnnotationAnnotator

public void setTermAnnotationAnnotator(java.lang.String annotator,
                              int termAnnotationIndex)

Specified by:

setTermAnnotationAnnotator in interface MetadataStore

setTermAnnotationDescription

public void setTermAnnotationDescription(java.lang.String description,
                                int termAnnotationIndex)

Specified by:

setTermAnnotationDescription in interface MetadataStore

setTermAnnotationID

public void setTermAnnotationID(java.lang.String id,
                       int termAnnotationIndex)

Specified by:

setTermAnnotationID in interface MetadataStore

setTermAnnotationNamespace

public void setTermAnnotationNamespace(java.lang.String namespace,
                              int termAnnotationIndex)

Specified by:

setTermAnnotationNamespace in interface MetadataStore

setTermAnnotationValue

public void setTermAnnotationValue(java.lang.String value,
                          int termAnnotationIndex)

Specified by:

setTermAnnotationValue in interface MetadataStore

setTiffDataFirstC

public void setTiffDataFirstC(NonNegativeInteger firstC,
                     int imageIndex,
                     int tiffDataIndex)

Specified by:

setTiffDataFirstC in interface MetadataStore

setTiffDataFirstT

public void setTiffDataFirstT(NonNegativeInteger firstT,
                     int imageIndex,
                     int tiffDataIndex)

Specified by:

setTiffDataFirstT in interface MetadataStore

setTiffDataFirstZ

public void setTiffDataFirstZ(NonNegativeInteger firstZ,
                     int imageIndex,
                     int tiffDataIndex)

Specified by:

setTiffDataFirstZ in interface MetadataStore

setTiffDataIFD

public void setTiffDataIFD(NonNegativeInteger ifd,
                  int imageIndex,
                  int tiffDataIndex)

Specified by:

setTiffDataIFD in interface MetadataStore

setTiffDataPlaneCount

public void setTiffDataPlaneCount(NonNegativeInteger planeCount,
                         int imageIndex,
                         int tiffDataIndex)

Specified by:

setTiffDataPlaneCount in interface MetadataStore

setTimestampAnnotationAnnotationRef

public void setTimestampAnnotationAnnotationRef(java.lang.String annotation,
                                       int timestampAnnotationIndex,
                                       int annotationRefIndex)

Specified by:

setTimestampAnnotationAnnotationRef in interface MetadataStore

setTimestampAnnotationAnnotator

public void setTimestampAnnotationAnnotator(java.lang.String annotator,
                                   int timestampAnnotationIndex)

Specified by:

setTimestampAnnotationAnnotator in interface MetadataStore

setTimestampAnnotationDescription

public void setTimestampAnnotationDescription(java.lang.String description,
                                     int timestampAnnotationIndex)

Specified by:

setTimestampAnnotationDescription in interface MetadataStore

setTimestampAnnotationID

public void setTimestampAnnotationID(java.lang.String id,
                            int timestampAnnotationIndex)

Specified by:

setTimestampAnnotationID in interface MetadataStore

setTimestampAnnotationNamespace

public void setTimestampAnnotationNamespace(java.lang.String namespace,
                                   int timestampAnnotationIndex)

Specified by:

setTimestampAnnotationNamespace in interface MetadataStore

setTimestampAnnotationValue

public void setTimestampAnnotationValue(Timestamp value,
                               int timestampAnnotationIndex)

Specified by:

setTimestampAnnotationValue in interface MetadataStore

setTransmittanceRangeCutIn

public void setTransmittanceRangeCutIn(PositiveInteger cutIn,
                              int instrumentIndex,
                              int filterIndex)

Specified by:

setTransmittanceRangeCutIn in interface MetadataStore

setTransmittanceRangeCutInTolerance

public void setTransmittanceRangeCutInTolerance(NonNegativeInteger cutInTolerance,
                                       int instrumentIndex,
                                       int filterIndex)

Specified by:

setTransmittanceRangeCutInTolerance in interface MetadataStore

setTransmittanceRangeCutOut

public void setTransmittanceRangeCutOut(PositiveInteger cutOut,
                               int instrumentIndex,
                               int filterIndex)

Specified by:

setTransmittanceRangeCutOut in interface MetadataStore

setTransmittanceRangeCutOutTolerance

public void setTransmittanceRangeCutOutTolerance(NonNegativeInteger cutOutTolerance,
                                        int instrumentIndex,
                                        int filterIndex)

Specified by:

setTransmittanceRangeCutOutTolerance in interface MetadataStore

setTransmittanceRangeTransmittance

public void setTransmittanceRangeTransmittance(PercentFraction transmittance,
                                      int instrumentIndex,
                                      int filterIndex)

Specified by:

setTransmittanceRangeTransmittance in interface MetadataStore

setUUIDValue

public void setUUIDValue(java.lang.String value,
                int imageIndex,
                int tiffDataIndex)

Specified by:

setUUIDValue in interface MetadataStore

setUUIDFileName

public void setUUIDFileName(java.lang.String fileName,
                   int imageIndex,
                   int tiffDataIndex)

Specified by:

setUUIDFileName in interface MetadataStore

setWellAnnotationRef

public void setWellAnnotationRef(java.lang.String annotation,
                        int plateIndex,
                        int wellIndex,
                        int annotationRefIndex)

Specified by:

setWellAnnotationRef in interface MetadataStore

setWellColor

public void setWellColor(Color color,
                int plateIndex,
                int wellIndex)

Specified by:

setWellColor in interface MetadataStore

setWellColumn

public void setWellColumn(NonNegativeInteger column,
                 int plateIndex,
                 int wellIndex)

Specified by:

setWellColumn in interface MetadataStore

setWellExternalDescription

public void setWellExternalDescription(java.lang.String externalDescription,
                              int plateIndex,
                              int wellIndex)

Specified by:

setWellExternalDescription in interface MetadataStore

setWellExternalIdentifier

public void setWellExternalIdentifier(java.lang.String externalIdentifier,
                             int plateIndex,
                             int wellIndex)

Specified by:

setWellExternalIdentifier in interface MetadataStore

setWellID

public void setWellID(java.lang.String id,
             int plateIndex,
             int wellIndex)

Specified by:

setWellID in interface MetadataStore

setWellReagentRef

public void setWellReagentRef(java.lang.String reagent,
                     int plateIndex,
                     int wellIndex)

Specified by:

setWellReagentRef in interface MetadataStore

setWellRow

public void setWellRow(NonNegativeInteger row,
              int plateIndex,
              int wellIndex)

Specified by:

setWellRow in interface MetadataStore

setWellType

public void setWellType(java.lang.String type,
               int plateIndex,
               int wellIndex)

Specified by:

setWellType in interface MetadataStore

setWellSampleAnnotationRef

public void setWellSampleAnnotationRef(java.lang.String annotation,
                              int plateIndex,
                              int wellIndex,
                              int wellSampleIndex,
                              int annotationRefIndex)

Specified by:

setWellSampleAnnotationRef in interface MetadataStore

setWellSampleID

public void setWellSampleID(java.lang.String id,
                   int plateIndex,
                   int wellIndex,
                   int wellSampleIndex)

Specified by:

setWellSampleID in interface MetadataStore

setWellSampleImageRef

public void setWellSampleImageRef(java.lang.String image,
                         int plateIndex,
                         int wellIndex,
                         int wellSampleIndex)

Specified by:

setWellSampleImageRef in interface MetadataStore

setWellSampleIndex

public void setWellSampleIndex(NonNegativeInteger index,
                      int plateIndex,
                      int wellIndex,
                      int wellSampleIndex)

Specified by:

setWellSampleIndex in interface MetadataStore

setWellSamplePositionX

public void setWellSamplePositionX(java.lang.Double positionX,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

Specified by:

setWellSamplePositionX in interface MetadataStore

setWellSamplePositionY

public void setWellSamplePositionY(java.lang.Double positionY,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

Specified by:

setWellSamplePositionY in interface MetadataStore

setWellSampleTimepoint

public void setWellSampleTimepoint(Timestamp timepoint,
                          int plateIndex,
                          int wellIndex,
                          int wellSampleIndex)

Specified by:

setWellSampleTimepoint in interface MetadataStore

setXMLAnnotationAnnotationRef

public void setXMLAnnotationAnnotationRef(java.lang.String annotation,
                                 int XMLAnnotationIndex,
                                 int annotationRefIndex)

Specified by:

setXMLAnnotationAnnotationRef in interface MetadataStore

setXMLAnnotationAnnotator

public void setXMLAnnotationAnnotator(java.lang.String annotator,
                             int XMLAnnotationIndex)

Specified by:

setXMLAnnotationAnnotator in interface MetadataStore

setXMLAnnotationDescription

public void setXMLAnnotationDescription(java.lang.String description,
                               int XMLAnnotationIndex)

Specified by:

setXMLAnnotationDescription in interface MetadataStore

setXMLAnnotationID

public void setXMLAnnotationID(java.lang.String id,
                      int XMLAnnotationIndex)

Specified by:

setXMLAnnotationID in interface MetadataStore

setXMLAnnotationNamespace

public void setXMLAnnotationNamespace(java.lang.String namespace,
                             int XMLAnnotationIndex)

Specified by:

setXMLAnnotationNamespace in interface MetadataStore

setXMLAnnotationValue

public void setXMLAnnotationValue(java.lang.String value,
                         int XMLAnnotationIndex)

Specified by:

setXMLAnnotationValue in interface MetadataStore