loci.plugins.util

Class ROIHandler

java.lang.Object

loci.plugins.util.ROIHandler

public class ROIHandler
extends java.lang.Object

Utility class for managing regions of interest within ImageJ. Capable of constructing ROIs within ImageJ's ROI manager matching those specified in an OME metadata store, and vice versa.

Source code:

Trac, Gitweb

Author:

Melissa Linkert melissa at glencoesoftware.com

Constructor Summary

Constructors

Constructor and Description
ROIHandler()

Method Summary

Methods

Modifier and Type	Method and Description
static void	openROIs(IMetadata retrieve, ImagePlus[] images) Look for ROIs in the given OMEXMLMetadata; if any are present, apply them to the given images and display them in the ROI manager.
static void	saveROIs(MetadataStore store) Save ROIs in the ROI manager to the given MetadataStore.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ROIHandler

public ROIHandler()

Method Detail

openROIs

public static void openROIs(IMetadata retrieve,
            ImagePlus[] images)

Look for ROIs in the given OMEXMLMetadata; if any are present, apply them to the given images and display them in the ROI manager.

saveROIs

public static void saveROIs(MetadataStore store)

Save ROIs in the ROI manager to the given MetadataStore.