loci.plugins

Class Slicer

java.lang.Object

loci.plugins.Slicer

All Implemented Interfaces:

PlugInFilter

public class Slicer
extends java.lang.Object
implements PlugInFilter

A plugin for splitting an image stack into separate channels, focal planes and/or time points.

Source code:

Trac, Gitweb

Author:

Melissa Linkert melissa at glencoesoftware.com

Field Summary

Fields

Modifier and Type	Field and Description
boolean	canceled Flag indicating whether last operation was canceled.

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor and Description
Slicer()

Method Summary

Methods

Modifier and Type	Method and Description
static ImagePlus	reorder(ImagePlus imp, java.lang.String origOrder, java.lang.String newOrder) Reorder the given ImagePlus's stack.
ImagePlus[]	reslice(ImagePlus imp, boolean sliceC, boolean sliceZ, boolean sliceT, java.lang.String stackOrder)
void	run(ImageProcessor ip)
int	setup(java.lang.String arg, ImagePlus imp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

canceled

public boolean canceled

Flag indicating whether last operation was canceled.

Constructor Detail

Slicer

public Slicer()

Method Detail

reslice

public ImagePlus[] reslice(ImagePlus imp,
                  boolean sliceC,
                  boolean sliceZ,
                  boolean sliceT,
                  java.lang.String stackOrder)

reorder

public static ImagePlus reorder(ImagePlus imp,
                java.lang.String origOrder,
                java.lang.String newOrder)

Reorder the given ImagePlus's stack.

setup

public int setup(java.lang.String arg,
        ImagePlus imp)

Specified by:

setup in interface PlugInFilter

run

public void run(ImageProcessor ip)

Specified by:

run in interface PlugInFilter