loci.formats.in

Class MetamorphHandler

java.lang.Object

org.xml.sax.helpers.DefaultHandler

loci.common.xml.BaseHandler

loci.formats.in.MetamorphHandler

All Implemented Interfaces:

org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler

public class MetamorphHandler
extends BaseHandler

MetamorphTiffReader is the file format reader for TIFF files produced by Metamorph software version 7.5 and above.

Source code:

Trac, Gitweb

Author:

Melissa Linkert melissa at glencoesoftware.com, Thomas Caswell tcaswell at uchicago.edu

Constructor Summary

Constructors

Constructor and Description
MetamorphHandler()
MetamorphHandler(java.util.Hashtable metadata)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getBinning()
java.lang.String	getChannelName()
java.lang.String	getDate()
java.util.Vector<java.lang.Double>	getExposures()
java.lang.Double	getGain()
java.lang.String	getImageName()
double	getPixelSizeX()
double	getPixelSizeY()
double	getReadOutRate()
java.lang.String	getStageLabel()
double	getStagePositionX()
double	getStagePositionY()
double	getTemperature()
java.util.Vector<java.lang.String>	getTimestamps()
java.util.Vector<java.lang.Integer>	getWavelengths()
double	getZoom()
java.util.Vector<java.lang.Double>	getZPositions()
void	startElement(java.lang.String uri, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attributes)

Methods inherited from class loci.common.xml.BaseHandler

resolveEntity

Methods inherited from class org.xml.sax.helpers.DefaultHandler

characters, endDocument, endElement, endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, setDocumentLocator, skippedEntity, startDocument, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetamorphHandler

public MetamorphHandler()

MetamorphHandler

public MetamorphHandler(java.util.Hashtable metadata)

Method Detail

getGain

public java.lang.Double getGain()

getChannelName

public java.lang.String getChannelName()

getStageLabel

public java.lang.String getStageLabel()

getTimestamps

public java.util.Vector<java.lang.String> getTimestamps()

getWavelengths

public java.util.Vector<java.lang.Integer> getWavelengths()

getZPositions

public java.util.Vector<java.lang.Double> getZPositions()

getDate

public java.lang.String getDate()

getImageName

public java.lang.String getImageName()

getPixelSizeX

public double getPixelSizeX()

getPixelSizeY

public double getPixelSizeY()

getTemperature

public double getTemperature()

getBinning

public java.lang.String getBinning()

getReadOutRate

public double getReadOutRate()

getZoom

public double getZoom()

getStagePositionX

public double getStagePositionX()

getStagePositionY

public double getStagePositionY()

getExposures

public java.util.Vector<java.lang.Double> getExposures()

startElement

public void startElement(java.lang.String uri,
                java.lang.String localName,
                java.lang.String qName,
                org.xml.sax.Attributes attributes)

Specified by:

startElement in interface org.xml.sax.ContentHandler

Overrides:

startElement in class org.xml.sax.helpers.DefaultHandler