loci.common

Class StreamHandle

java.lang.Object

loci.common.StreamHandle

All Implemented Interfaces:

java.io.DataInput, java.io.DataOutput, IRandomAccess

Direct Known Subclasses:

BZip2Handle, GZipHandle, URLHandle, ZipHandle

public abstract class StreamHandle
extends java.lang.Object
implements IRandomAccess

Abstract IRandomAccess implementation for reading from InputStreams and writing to OutputStreams.

Source code:

Trac, Gitweb

Author:

Melissa Linkert melissa at glencoesoftware.com

See Also:

IRandomAccess

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String	file Name of the open stream.
protected long	fp Current position within the stream.
protected long	length Length of the stream.
protected long	mark Marked position within the stream.
protected java.nio.ByteOrder	order Byte ordering of this stream.
protected java.io.DataOutputStream	outStream OutputStream to be used for writing.
protected java.io.DataInputStream	stream InputStream to be used for reading.

Constructor Summary

Constructors

Constructor and Description
StreamHandle() Construct a new StreamHandle.

Method Summary

Methods

Modifier and Type	Method and Description
void	close() Closes this random access stream and releases any system resources associated with the stream.
long	getFilePointer() Returns the current offset in this stream.
java.nio.ByteOrder	getOrder() Returns the current order of the stream.
long	length() Returns the length of this stream.
int	read(byte[] b) Reads up to b.length bytes of data from this stream into an array of bytes.
int	read(byte[] b, int off, int len) Reads up to len bytes of data from this stream into an array of bytes.
int	read(java.nio.ByteBuffer buffer) Reads up to buffer.capacity() bytes of data from this stream into a ByteBuffer.
int	read(java.nio.ByteBuffer buffer, int off, int len) Reads up to len bytes of data from this stream into a ByteBuffer.
boolean	readBoolean()
byte	readByte()
char	readChar()
double	readDouble()
float	readFloat()
void	readFully(byte[] b)
void	readFully(byte[] b, int off, int len)
int	readInt()
java.lang.String	readLine()
long	readLong()
short	readShort()
int	readUnsignedByte()
int	readUnsignedShort()
java.lang.String	readUTF()
protected abstract void	resetStream() Close and reopen the stream; the stream pointer and mark should be reset to 0.
void	seek(long pos) Sets the stream pointer offset, measured from the beginning of this stream, at which the next read or write occurs.
void	setOrder(java.nio.ByteOrder order) Sets the byte order of the stream.
int	skipBytes(int n)
void	write(byte[] b)
void	write(byte[] b, int off, int len)
void	write(java.nio.ByteBuffer buf) Writes up to buffer.capacity() bytes of data from the given ByteBuffer to this stream.
void	write(java.nio.ByteBuffer buf, int off, int len) Writes up to len bytes of data from the given ByteBuffer to this stream.
void	write(int b)
void	writeBoolean(boolean v)
void	writeByte(int v)
void	writeBytes(java.lang.String s)
void	writeChar(int v)
void	writeChars(java.lang.String s)
void	writeDouble(double v)
void	writeFloat(float v)
void	writeInt(int v)
void	writeLong(long v)
void	writeShort(int v)
void	writeUTF(java.lang.String str)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

file

protected java.lang.String file

Name of the open stream.

stream

protected java.io.DataInputStream stream

InputStream to be used for reading.

outStream

protected java.io.DataOutputStream outStream

OutputStream to be used for writing.

length

protected long length

Length of the stream.

fp

protected long fp

Current position within the stream.

mark

protected long mark

Marked position within the stream.

order

protected java.nio.ByteOrder order

Byte ordering of this stream.

Constructor Detail

StreamHandle

public StreamHandle()

Construct a new StreamHandle. The file pointer will be set to 0, and the byte ordering will be big-endian.

Method Detail

close

public void close()
           throws java.io.IOException

Description copied from interface: IRandomAccess

Closes this random access stream and releases any system resources associated with the stream.

Specified by:

close in interface IRandomAccess

Throws:

java.io.IOException

getFilePointer

public long getFilePointer()
                    throws java.io.IOException

Description copied from interface: IRandomAccess

Returns the current offset in this stream.

Specified by:

getFilePointer in interface IRandomAccess

Throws:

java.io.IOException

length

public long length()
            throws java.io.IOException

Description copied from interface: IRandomAccess

Returns the length of this stream.

Specified by:

length in interface IRandomAccess

Throws:

java.io.IOException

read

public int read(byte[] b)
         throws java.io.IOException

Description copied from interface: IRandomAccess

Reads up to b.length bytes of data from this stream into an array of bytes.

Specified by:

read in interface IRandomAccess

Returns:

the total number of bytes read into the buffer.

Throws:

java.io.IOException

read

public int read(byte[] b,
       int off,
       int len)
         throws java.io.IOException

Description copied from interface: IRandomAccess

Reads up to len bytes of data from this stream into an array of bytes.

Specified by:

read in interface IRandomAccess

Returns:

the total number of bytes read into the buffer.

Throws:

java.io.IOException

read

public int read(java.nio.ByteBuffer buffer)
         throws java.io.IOException

Description copied from interface: IRandomAccess

Reads up to buffer.capacity() bytes of data from this stream into a ByteBuffer.

Specified by:

read in interface IRandomAccess

Throws:

java.io.IOException

read

public int read(java.nio.ByteBuffer buffer,
       int off,
       int len)
         throws java.io.IOException

Description copied from interface: IRandomAccess

Reads up to len bytes of data from this stream into a ByteBuffer.

Specified by:

read in interface IRandomAccess

Returns:

the total number of bytes read into the buffer.

Throws:

java.io.IOException

seek

public void seek(long pos)
          throws java.io.IOException

Description copied from interface: IRandomAccess

Sets the stream pointer offset, measured from the beginning of this stream, at which the next read or write occurs.

Specified by:

seek in interface IRandomAccess

Throws:

java.io.IOException

write

public void write(java.nio.ByteBuffer buf)
           throws java.io.IOException

Description copied from interface: IRandomAccess

Writes up to buffer.capacity() bytes of data from the given ByteBuffer to this stream.

Specified by:

write in interface IRandomAccess

Throws:

java.io.IOException

write

public void write(java.nio.ByteBuffer buf,
         int off,
         int len)
           throws java.io.IOException

Description copied from interface: IRandomAccess

Writes up to len bytes of data from the given ByteBuffer to this stream.

Specified by:

write in interface IRandomAccess

Throws:

java.io.IOException

getOrder

public java.nio.ByteOrder getOrder()

Description copied from interface: IRandomAccess

Returns the current order of the stream.

Specified by:

getOrder in interface IRandomAccess

Returns:

See above.

setOrder

public void setOrder(java.nio.ByteOrder order)

Description copied from interface: IRandomAccess

Sets the byte order of the stream.

Specified by:

setOrder in interface IRandomAccess

Parameters:

order - Order to set.

readBoolean

public boolean readBoolean()
                    throws java.io.IOException

Specified by:

readBoolean in interface java.io.DataInput

Throws:

java.io.IOException

readByte

public byte readByte()
              throws java.io.IOException

Specified by:

readByte in interface java.io.DataInput

Throws:

java.io.IOException

readChar

public char readChar()
              throws java.io.IOException

Specified by:

readChar in interface java.io.DataInput

Throws:

java.io.IOException

readDouble

public double readDouble()
                  throws java.io.IOException

Specified by:

readDouble in interface java.io.DataInput

Throws:

java.io.IOException

readFloat

public float readFloat()
                throws java.io.IOException

Specified by:

readFloat in interface java.io.DataInput

Throws:

java.io.IOException

readFully

public void readFully(byte[] b)
               throws java.io.IOException

Specified by:

readFully in interface java.io.DataInput

Throws:

java.io.IOException

readFully

public void readFully(byte[] b,
             int off,
             int len)
               throws java.io.IOException

Specified by:

readFully in interface java.io.DataInput

Throws:

java.io.IOException

readInt

public int readInt()
            throws java.io.IOException

Specified by:

readInt in interface java.io.DataInput

Throws:

java.io.IOException

readLine

public java.lang.String readLine()
                          throws java.io.IOException

Specified by:

readLine in interface java.io.DataInput

Throws:

java.io.IOException

readLong

public long readLong()
              throws java.io.IOException

Specified by:

readLong in interface java.io.DataInput

Throws:

java.io.IOException

readShort

public short readShort()
                throws java.io.IOException

Specified by:

readShort in interface java.io.DataInput

Throws:

java.io.IOException

readUnsignedByte

public int readUnsignedByte()
                     throws java.io.IOException

Specified by:

readUnsignedByte in interface java.io.DataInput

Throws:

java.io.IOException

readUnsignedShort

public int readUnsignedShort()
                      throws java.io.IOException

Specified by:

readUnsignedShort in interface java.io.DataInput

Throws:

java.io.IOException

readUTF

public java.lang.String readUTF()
                         throws java.io.IOException

Specified by:

readUTF in interface java.io.DataInput

Throws:

java.io.IOException

skipBytes

public int skipBytes(int n)
              throws java.io.IOException

Specified by:

skipBytes in interface java.io.DataInput

Throws:

java.io.IOException

write

public void write(byte[] b)
           throws java.io.IOException

Specified by:

write in interface java.io.DataOutput

Throws:

java.io.IOException

write

public void write(byte[] b,
         int off,
         int len)
           throws java.io.IOException

Specified by:

write in interface java.io.DataOutput

Throws:

java.io.IOException

write

public void write(int b)
           throws java.io.IOException

Specified by:

write in interface java.io.DataOutput

Throws:

java.io.IOException

writeBoolean

public void writeBoolean(boolean v)
                  throws java.io.IOException

Specified by:

writeBoolean in interface java.io.DataOutput

Throws:

java.io.IOException

writeByte

public void writeByte(int v)
               throws java.io.IOException

Specified by:

writeByte in interface java.io.DataOutput

Throws:

java.io.IOException

writeBytes

public void writeBytes(java.lang.String s)
                throws java.io.IOException

Specified by:

writeBytes in interface java.io.DataOutput

Throws:

java.io.IOException

writeChar

public void writeChar(int v)
               throws java.io.IOException

Specified by:

writeChar in interface java.io.DataOutput

Throws:

java.io.IOException

writeChars

public void writeChars(java.lang.String s)
                throws java.io.IOException

Specified by:

writeChars in interface java.io.DataOutput

Throws:

java.io.IOException

writeDouble

public void writeDouble(double v)
                 throws java.io.IOException

Specified by:

writeDouble in interface java.io.DataOutput

Throws:

java.io.IOException

writeFloat

public void writeFloat(float v)
                throws java.io.IOException

Specified by:

writeFloat in interface java.io.DataOutput

Throws:

java.io.IOException

writeInt

public void writeInt(int v)
              throws java.io.IOException

Specified by:

writeInt in interface java.io.DataOutput

Throws:

java.io.IOException

writeLong

public void writeLong(long v)
               throws java.io.IOException

Specified by:

writeLong in interface java.io.DataOutput

Throws:

java.io.IOException

writeShort

public void writeShort(int v)
                throws java.io.IOException

Specified by:

writeShort in interface java.io.DataOutput

Throws:

java.io.IOException

writeUTF

public void writeUTF(java.lang.String str)
              throws java.io.IOException

Specified by:

writeUTF in interface java.io.DataOutput

Throws:

java.io.IOException

resetStream

protected abstract void resetStream()
                             throws java.io.IOException

Close and reopen the stream; the stream pointer and mark should be reset to 0. This method is called if we need to seek backwards within the stream.

Throws:

java.io.IOException