| Package | Description | 
|---|---|
| loci.formats | Bio-Formats: a library for reading and writing popular microscopy file
formats. | 
| loci.formats.meta | Package containing core Bio-Formats metadata interfaces for the OME data model. | 
| loci.formats.ome | Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download. | 
| loci.plugins.in | Bio-Formats Importer plugin for ImageJ. | 
| loci.plugins.util | Utility classes and methods for the LOCI plugins for ImageJ. | 
| Modifier and Type | Method and Description | 
|---|---|
| static IMetadata | MetadataTools. createOMEXMLMetadata()Creates an OME-XML metadata object using reflection, to avoid
 direct dependencies on the optional  loci.formats.omepackage. | 
| static IMetadata | MetadataTools. createOMEXMLMetadata(String xml)Deprecated. 
 This method is not thread-safe; use
  OMEXMLService.createOMEXMLMetadata(String)instead. | 
| static IMetadata | MetadataTools. createOMEXMLMetadata(String xml,
                    String version)Deprecated. 
 This method is not thread-safe; use
  OMEXMLService.createOMEXMLMetadata(String,
   String)instead. | 
| static IMetadata | MetadataTools. getOMEMetadata(MetadataRetrieve src)Deprecated. 
 This method is not thread-safe; use
  OMEXMLService.getOMEMetadata(MetadataRetrieve)instead. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | AggregateMetadataA metadata store which delegates the actual storage to one or more sub
 metadata stores. | 
| class  | DummyMetadataA dummy implementation for  MetadataStoreandMetadataRetrievethat is used when no other
 metadata implementations are available. | 
| Modifier and Type | Interface and Description | 
|---|---|
| interface  | OMEXMLMetadataA utility class for constructing and manipulating OME-XML DOMs. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | AbstractOMEXMLMetadataA utility class for constructing and manipulating OME-XML DOMs. | 
| class  | OMEXMLMetadataImplA metadata store implementation for constructing and manipulating OME-XML
 DOMs for the current version of OME-XML. | 
| Modifier and Type | Field and Description | 
|---|---|
| protected IMetadata | ImportProcess. meta | 
| Modifier and Type | Method and Description | 
|---|---|
| IMetadata | ImportProcess. getOMEMetadata()Valid only after  ImportStep.READER. | 
| Modifier and Type | Method and Description | 
|---|---|
| static void | ROIHandler. openROIs(IMetadata retrieve,
        ImagePlus[] images)Look for ROIs in the given OMEXMLMetadata; if any are present, apply
 them to the given images and display them in the ROI manager. | 
Copyright © 2014 Open Microscopy Environment