| Package | Description | 
|---|---|
| loci.formats | Bio-Formats: a library for reading and writing popular microscopy file
formats. | 
| loci.formats.gui | Package containing Bio-Formats graphical user interface code. | 
| loci.formats.meta | Package containing core Bio-Formats metadata interfaces for the OME data model. | 
| loci.formats.ome | Package containing Bio-Formats OME-related logic for
OME-XML metadata, and database import, upload and download. | 
| loci.formats.services | 
| Modifier and Type | Field and Description | 
|---|---|
| protected MetadataRetrieve | FormatWriter. metadataRetrieveCurrent metadata retrieval object. | 
| Modifier and Type | Method and Description | 
|---|---|
| static MetadataRetrieve | MetadataTools. asRetrieve(MetadataStore meta)Deprecated. 
 This method is not thread-safe; use
  OMEXMLService.asRetrieve(MetadataStore)instead. | 
| MetadataRetrieve | IFormatWriter. getMetadataRetrieve()Retrieves the current metadata retrieval object for this writer. | 
| MetadataRetrieve | FormatWriter. getMetadataRetrieve() | 
| MetadataRetrieve | WriterWrapper. getMetadataRetrieve() | 
| MetadataRetrieve | ImageWriter. getMetadataRetrieve() | 
| Modifier and Type | Method and Description | 
|---|---|
| static IMetadata | MetadataTools. getOMEMetadata(MetadataRetrieve src)Deprecated. 
 This method is not thread-safe; use
  OMEXMLService.getOMEMetadata(MetadataRetrieve)instead. | 
| static String | MetadataTools. getOMEXML(MetadataRetrieve src)Deprecated. 
 This method is not thread-safe; use
  OMEXMLService.getOMEXML(MetadataRetrieve)instead. | 
| void | IFormatWriter. setMetadataRetrieve(MetadataRetrieve r)Sets the metadata retrieval object from
 which to retrieve standardized metadata. | 
| void | FormatWriter. setMetadataRetrieve(MetadataRetrieve retrieve) | 
| void | WriterWrapper. setMetadataRetrieve(MetadataRetrieve r) | 
| void | ImageWriter. setMetadataRetrieve(MetadataRetrieve r) | 
| static void | MetadataTools. verifyMinimumPopulated(MetadataRetrieve src)Checks whether the given metadata object has the minimum metadata
 populated to successfully describe an Image. | 
| static void | MetadataTools. verifyMinimumPopulated(MetadataRetrieve src,
                      int n)Checks whether the given metadata object has the minimum metadata
 populated to successfully describe the nth Image. | 
| Modifier and Type | Method and Description | 
|---|---|
| static BufferedImage | AWTImageTools. makeImage(byte[] data,
         boolean interleaved,
         MetadataRetrieve meta,
         int series)Creates an image from the given raw byte array, obtaining the
 dimensional parameters from the specified metadata object. | 
| Modifier and Type | Interface and Description | 
|---|---|
| interface  | IMetadataA proxy capable of bidirectional communication of biological image data to
 and from a particular storage medium. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | AggregateMetadataA metadata store which delegates the actual storage to one or more sub
 metadata stores. | 
| class  | DummyMetadataA dummy implementation for  MetadataStoreandMetadataRetrievethat is used when no other
 metadata implementations are available. | 
| Modifier and Type | Method and Description | 
|---|---|
| static void | MetadataConverter. convertMetadata(MetadataRetrieve src,
               MetadataStore dest)Copies information from a metadata retrieval object
 (source) into a metadata store (destination). | 
| Modifier and Type | Interface and Description | 
|---|---|
| interface  | OMEXMLMetadataA utility class for constructing and manipulating OME-XML DOMs. | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | AbstractOMEXMLMetadataA utility class for constructing and manipulating OME-XML DOMs. | 
| class  | OMEXMLMetadataImplA metadata store implementation for constructing and manipulating OME-XML
 DOMs for the current version of OME-XML. | 
| Modifier and Type | Method and Description | 
|---|---|
| MetadataRetrieve | OMEXMLService. asRetrieve(MetadataStore meta)Gets the given  MetadataStoreobject as aMetadataRetrieve. | 
| MetadataRetrieve | OMEXMLServiceImpl. asRetrieve(MetadataStore meta) | 
| Modifier and Type | Method and Description | 
|---|---|
| MetadataStore | OMEXMLService. asStore(MetadataRetrieve meta)Gets the given  MetadataRetrieveobject as aMetadataStore. | 
| MetadataStore | OMEXMLServiceImpl. asStore(MetadataRetrieve meta) | 
| void | OMEXMLService. convertMetadata(MetadataRetrieve src,
               MetadataStore dest)Copies information from a metadata retrieval object
 (source) into a metadata store (destination). | 
| void | OMEXMLServiceImpl. convertMetadata(MetadataRetrieve src,
               MetadataStore dest) | 
| OMEXMLMetadata | OMEXMLService. getOMEMetadata(MetadataRetrieve src)Returns a  OMEXMLMetadataobject with the same
 contents as the given MetadataRetrieve, converting it if necessary. | 
| OMEXMLMetadata | OMEXMLServiceImpl. getOMEMetadata(MetadataRetrieve src) | 
| String | OMEXMLService. getOMEXML(MetadataRetrieve src)Extracts an OME-XML metadata string from the given metadata object,
 by converting to an OME-XML metadata object if necessary. | 
| String | OMEXMLServiceImpl. getOMEXML(MetadataRetrieve src) | 
Copyright © 2014 Open Microscopy Environment