Serialized Form (Bio-Formats API)

Package com.sun.media.imageioimpl.common
- Class com.sun.media.imageioimpl.common.BogusColorSpace extends ColorSpace implements Serializable
- Class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace extends ColorSpace implements Serializable
  - Serialized Fields
    - csRGB
```
ColorSpace csRGB
```
- Class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace extends ColorSpace implements Serializable
  - Serialized Fields
    - csRGB
```
ColorSpace csRGB
```
Package jj2000.j2k
- Class jj2000.j2k.NoNextElementException extends RuntimeException implements Serializable
- Class jj2000.j2k.NotImplementedError extends Error implements Serializable
Package jj2000.j2k.codestream
- Class jj2000.j2k.codestream.CorruptedCodestreamException extends IOException implements Serializable
Package jj2000.j2k.util
- Class jj2000.j2k.util.StringFormatException extends IllegalArgumentException implements Serializable
Package loci.common
- Class loci.common.HandleException extends IOException implements Serializable
- Class loci.common.IniList extends ArrayList<IniTable> implements Serializable
- Class loci.common.IniTable extends HashMap<String,String> implements Serializable
- Class loci.common.ReflectException extends Exception implements Serializable
Package loci.common.enumeration
- Class loci.common.enumeration.EnumException extends RuntimeException implements Serializable
  
  serialVersionUID:
  
  -4969429871517178079L
Package loci.common.services
- Class loci.common.services.DependencyException extends Exception implements Serializable
  
  serialVersionUID:
  
  -7836244849086491562L
  - Serialized Fields
    - failureClass
```
Class<T> failureClass
```
      The class that was used in a failed instantiation.
- Class loci.common.services.ServiceException extends Exception implements Serializable
  
  serialVersionUID:
  
  7402442944895106504L
Package loci.formats
- Class loci.formats.FormatException extends Exception implements Serializable
- Class loci.formats.MissingLibraryException extends FormatException implements Serializable
- Class loci.formats.UnknownFormatException extends FormatException implements Serializable
- Class loci.formats.UnsupportedCompressionException extends FormatException implements Serializable
Package loci.formats.cache
- Class loci.formats.cache.CacheException extends FormatException implements Serializable
Package loci.formats.gui
- Class loci.formats.gui.CacheComponent extends JPanel implements Serializable
  - Serialized Fields
    - cache
```
Cache cache
```
      The cache that this component controls.
    - sourceChooser
```
JComboBox<E> sourceChooser
```
      Combo box for choosing cache source.
    - strategyChooser
```
JComboBox<E> strategyChooser
```
      Combo box for choosing cache strategy.
    - range
```
JSpinner[] range
```
      Spinners for choosing range of slices to cache.
    - priority
```
JComboBox<E>[] priority
```
      Combo boxes for choosing axis priority.
    - order
```
JComboBox<E>[] order
```
      Combo boxes for choosing planar ordering.
    - id
```
String id
```
      File name that the cache is working with (debugging only).
    - lengths
```
int[] lengths
```
      Length of each dimensional axis, obtained from cache strategy.
- Class loci.formats.gui.CacheIndicator extends JComponent implements Serializable
  - Serialized Fields
    - cache
```
Cache cache
```
    - axis
```
int axis
```
    - comp
```
Component comp
```
    - lPad
```
int lPad
```
    - rPad
```
int rPad
```
- Class loci.formats.gui.DataConverter extends JFrame implements Serializable
  - Serialized Fields
    - reader
```
FileStitcher reader
```
    - swap
```
DimensionSwapper swap
```
    - biReader
```
BufferedImageReader biReader
```
    - writer
```
ImageWriter writer
```
    - biWriter
```
BufferedImageWriter biWriter
```
    - rc
```
JFileChooser rc
```
    - wc
```
JFileChooser wc
```
    - shutdown
```
boolean shutdown
```
    - force
```
boolean force
```
    - input
```
JTextField input
```
    - output
```
JTextField output
```
    - qtJava
```
JCheckBox qtJava
```
    - forceType
```
JCheckBox forceType
```
    - includeZ
```
JCheckBox includeZ
```
    - includeT
```
JCheckBox includeT
```
    - includeC
```
JCheckBox includeC
```
    - zLabel
```
JLabel zLabel
```
    - tLabel
```
JLabel tLabel
```
    - cLabel
```
JLabel cLabel
```
    - zChoice
```
JComboBox<E> zChoice
```
    - tChoice
```
JComboBox<E> tChoice
```
    - cChoice
```
JComboBox<E> cChoice
```
    - codec
```
JComboBox<E> codec
```
    - fps
```
JSpinner fps
```
    - series
```
JSpinner series
```
    - seriesRow
```
JPanel seriesRow
```
    - progress
```
JProgressBar progress
```
    - convert
```
JButton convert
```
- Class loci.formats.gui.ImageViewer extends JFrame implements Serializable
  - Serialized Fields
    - pane
```
JPanel pane
```
    - icon
```
ImageIcon icon
```
    - iconLabel
```
JLabel iconLabel
```
    - sliderPanel
```
JPanel sliderPanel
```
    - nSlider
```
JSlider nSlider
```
    - zSlider
```
JSlider zSlider
```
    - tSlider
```
JSlider tSlider
```
    - cSlider
```
JSlider cSlider
```
    - probeLabel
```
JLabel probeLabel
```
    - fileView
```
JMenuItem fileView
```
    - fileSave
```
JMenuItem fileSave
```
    - omeMeta
```
MetadataStore omeMeta
```
      Attached OME metadata store, if available.
    - myReader
```
BufferedImageReader myReader
```
      Current format reader.
    - myWriter
```
BufferedImageWriter myWriter
```
      Current format writer.
    - fileReader
```
IFormatReader fileReader
```
      Reader for files on disk.
    - fileWriter
```
IFormatWriter fileWriter
```
      Writer for files on disk.
    - filename
```
String filename
```
    - in
```
IFormatReader in
```
    - images
```
BufferedImage[] images
```
    - sizeZ
```
int sizeZ
```
    - sizeT
```
int sizeT
```
    - sizeC
```
int sizeC
```
    - anim
```
boolean anim
```
    - fps
```
int fps
```
    - canCloseReader
```
boolean canCloseReader
```
    - omexmlService
```
OMEXMLService omexmlService
```
      Service for working with OME-XML metadata.
    - sb
```
StringBuffer sb
```
- Class loci.formats.gui.PreviewPane extends JPanel implements Serializable
  - Serialized Fields
    - reader
```
BufferedImageReader reader
```
      Reader for use when loading thumbnails.
    - loadId
```
String loadId
```
      Current ID to load.
    - lastId
```
String lastId
```
      Last ID loaded.
    - loader
```
Thread loader
```
      Thumbnail loading thread.
    - loaderAlive
```
boolean loaderAlive
```
      Flag indicating whether loader thread should keep running.
    - refresher
```
Runnable refresher
```
      Method for syncing the view to the model.
    - iconLabel
```
JLabel iconLabel
```
      Labels containing thumbnail and dimensional information.
    - formatLabel
```
JLabel formatLabel
```
      Labels containing thumbnail and dimensional information.
    - resLabel
```
JLabel resLabel
```
      Labels containing thumbnail and dimensional information.
    - zctLabel
```
JLabel zctLabel
```
      Labels containing thumbnail and dimensional information.
    - typeLabel
```
JLabel typeLabel
```
      Labels containing thumbnail and dimensional information.
    - icon
```
ImageIcon icon
```
    - iconText
```
String iconText
```
    - formatText
```
String formatText
```
    - resText
```
String resText
```
    - zctText
```
String zctText
```
    - typeText
```
String typeText
```
    - iconTip
```
String iconTip
```
    - formatTip
```
String formatTip
```
    - resTip
```
String resTip
```
    - zctTip
```
String zctTip
```
    - typeTip
```
String typeTip
```
- Class loci.formats.gui.TwoChannelColorSpace extends ColorSpace implements Serializable
- Class loci.formats.gui.XMLCellRenderer extends DefaultTreeCellRenderer implements Serializable
- Class loci.formats.gui.XMLWindow extends JFrame implements Serializable
  - Serialized Fields
    - doc
```
Document doc
```
Package loci.formats.ome
- Class loci.formats.ome.OmeisException extends Exception implements Serializable
Package loci.formats.tiff
- Class loci.formats.tiff.IFD extends HashMap<Integer,Object> implements Serializable
- Class loci.formats.tiff.IFDList extends ArrayList<IFD> implements Serializable
- Class loci.formats.tiff.TiffRational extends Number implements Serializable
  - Serialized Fields
    - numer
```
long numer
```
      Components of the rational's fractional representation.
    - denom
```
long denom
```
      Components of the rational's fractional representation.
Package loci.formats.tools
- Class loci.formats.tools.EditTiffG extends JFrame implements Serializable
  - Serialized Fields
    - textArea
```
JTextArea textArea
```
    - fileBox
```
JFileChooser fileBox
```
    - file
```
File file
```
Package loci.ome.editor
- Class loci.ome.editor.ClickableList extends JList implements Serializable
  - Serialized Fields
    - jPop
```
JPopupMenu jPop
```
      The popup menu created when right-clicking on this list.
    - tableP
```
MetadataPane.TablePanel tableP
```
      The TablePanel this list of notes is for
    - textArea
```
JTextArea textArea
```
      The textarea that displays these notes.
    - myModel
```
DefaultListModel<E> myModel
```
      The listmodel for this list.
    - noteP
```
NotePanel noteP
```
      The NotePanel that contains this list of notes.
- Class loci.ome.editor.ClickableTable extends JTable implements Serializable
  - Serialized Fields
    - tp
```
MetadataPane.TablePanel tp
```
      stores the TablePanel this table is associated with.
    - jPop
```
JPopupMenu jPop
```
      is the current popup menu at any given rightclick.
    - thisRow
```
int thisRow
```
      the current row being clicked on at any point.
    - attrName
```
String attrName
```
      the name of the attribute in the row being clicked on currently.
    - isDuplicate
```
boolean isDuplicate
```
      tells at any given point if the TablePanel being added or deleted is a "duplicate" , e.g. if there is more than one element with its same tagname on a given level of the node tree.
    - labelR
```
TableCellRenderer labelR
```
      The TableCellRenderers for this ClickableTable.
    - textR
```
TableCellRenderer textR
```
      The TableCellRenderers for this ClickableTable.
    - comboR
```
TableCellRenderer comboR
```
      The TableCellRenderers for this ClickableTable.
    - gotoR
```
TableCellRenderer gotoR
```
      The TableCellRenderers for this ClickableTable.
    - labelE
```
TableCellEditor labelE
```
      The TableCellEditors for this ClickableTable.
    - textE
```
TableCellEditor textE
```
      The TableCellEditors for this ClickableTable.
    - comboE
```
TableCellEditor comboE
```
      The TableCellEditors for this ClickableTable.
    - gotoE
```
TableCellEditor gotoE
```
      The TableCellEditors for this ClickableTable.
    - editable
```
boolean editable
```
      Whether or not this table should be editable
- Class loci.ome.editor.ClickableTable.HelpFrame extends JFrame implements Serializable
- Class loci.ome.editor.ExportDialog extends JDialog implements Serializable
  - Serialized Fields
    - list
```
JList<E> list
```
      The JList found in this dialog.
- Class loci.ome.editor.GotoEditor extends AbstractCellEditor implements Serializable
  - Serialized Fields
    - button
```
GotoEditor.TableButton button
```
      The "Goto" button we're editing.
    - tableP
```
MetadataPane.TablePanel tableP
```
      The TablePanel this TableEditor is for.
- Class loci.ome.editor.GotoEditor.TableButton extends JButton implements Serializable
  - Serialized Fields
    - table
```
JTable table
```
    - whichRow
```
int whichRow
```
- Class loci.ome.editor.GotoRenderer extends JButton implements Serializable
- Class loci.ome.editor.MetadataEditor extends JFrame implements Serializable
  - Serialized Fields
    - opener
```
JFileChooser opener
```
      The file chooser used to save and open files.
    - saver
```
JFileChooser saver
```
      The file chooser used to save and open files.
    - tiffFilter
```
ExtensionFileFilter tiffFilter
```
      Format filters for saver JFileChooser.
    - omeFilter
```
ExtensionFileFilter omeFilter
```
      Format filters for saver JFileChooser.
    - metadata
```
MetadataPane metadata
```
      The MetadataPane used to display/edit OMEXML content.
    - currentFile
```
File currentFile
```
      Holds the current file being displayed.
    - tabsMenu
```
JMenu tabsMenu
```
      The "Tabs" menu.
    - opening
```
boolean opening
```
      Signifies whether we're opening(true) or saving(false) a file.
    - mdp
```
MetadataPane mdp
```
      Holds the xml viewer that displays xml data in a JTree.
    - fileNew
```
JMenuItem fileNew
```
      The File>New menu item.
    - fileSave
```
JMenuItem fileSave
```
      The File>Save menu item.
    - noteP
```
NotePane noteP
```
      The NotePane that displays a comprehensive list of all notes.
    - scanP
```
WiscScanPane scanP
```
      The WiscScan emulator that mimics the GUI of the WiscScan program for ease of use by our in-house biologists.
    - advView
```
JCheckBoxMenuItem advView
```
      The checkboxes that switch between the four views.
    - noteView
```
JCheckBoxMenuItem noteView
```
      The checkboxes that switch between the four views.
    - normView
```
JCheckBoxMenuItem normView
```
      The checkboxes that switch between the four views.
    - scanView
```
JCheckBoxMenuItem scanView
```
      The checkboxes that switch between the four views.
    - showID
```
JCheckBoxMenuItem showID
```
      The checkboxes that switch between the four views.
- Class loci.ome.editor.MetadataPane extends JPanel implements Serializable
  - Serialized Fields
    - tabPane
```
JTabbedPane tabPane
```
      Pane containing XML tree.
    - tParse
```
TemplateParser tParse
```
      TemplateParser object.
    - thisOmeNode
```
org.openmicroscopy.xml.OMENode thisOmeNode
```
      Keeps track of the OMENode being operated on currently.
    - panelList
```
Vector<E> panelList
```
      A list of all TablePanel objects.
    - panelsWithID
```
Vector<E> panelsWithID
```
      A list of TablePanel objects that have ID attributes.
    - addItems
```
Vector<E> addItems
```
      A list of external references to be added to the combobox cell editor.
    - tabPanelList
```
Vector<E> tabPanelList
```
      A list of the TabPanels.
    - internalDefs
```
Hashtable<K,V> internalDefs
```
      Hashtable containing internal semantic type defs in current file.
    - hasChanged
```
boolean hasChanged
```
      Signifies that the current file has changed from the last saved version.
    - addSave
```
boolean addSave
```
      If true, the save button should be display in each TabPanel.
    - editable
```
boolean editable
```
      Whether or not the user should be able to edit metadata.
    - showIDs
```
boolean showIDs
```
      Whether or not to display ID attributes. By default, is false.
    - originalTIFF
```
File originalTIFF
```
      Holds the original file if it is of TIFF format.
    - currentFile
```
File currentFile
```
      Holds the currently edited file, or null if none.
    - img
```
BufferedImage img
```
      Holds the first image of a tiff file.
    - thumb
```
BufferedImage thumb
```
      Holds the first image of a tiff file.
    - images
```
BufferedImage[] images
```
    - thumbs
```
BufferedImage[] thumbs
```
    - reader
```
BufferedImageReader reader
```
      Holds the image reader used to open image or null if none used.
    - minPixNum
```
int minPixNum
```
    - pixelsIDProblem
```
boolean pixelsIDProblem
```
    - isOMETiff
```
boolean isOMETiff
```
    - fileID
```
String fileID
```
    - tiffDataStore
```
Hashtable<K,V> tiffDataStore
```
    - ms
```
OMEXMLMetadata ms
```
    - rawPanel
```
JPanel rawPanel
```
      Panel containing raw XML dump.
    - rawText
```
JTextArea rawText
```
      Text area displaying raw XML.
    - raw
```
boolean raw
```
      Whether XML is being displayed in raw form.
- Class loci.ome.editor.MetadataPane.TablePanel extends JPanel implements Serializable
  - Serialized Fields
    - oNode
```
OMEXMLNode oNode
```
      The OMEXMLNode that this TablePanel is displaying.
    - tPanel
```
MetadataPane.TabPanel tPanel
```
      The TabPanel that this TablePanel is a part of.
    - noteP
```
NotePanel noteP
```
      The NotePanel that holds the notes for this TablePanel.
    - id
```
String id
```
      The "ID" OMEXML attribute for the OMEXMLNode this TablePanel displays.
    - name
```
String name
```
      The name of this TablePanel.
    - refDetails
```
String refDetails
```
      An String to hold misc data we want to display to distinguish the name presented for this as an internal reference.
    - table
```
ClickableTable table
```
      The ClickableTable that displays this TablePanel's metadata.
    - tHead
```
JTableHeader tHead
```
      The tableheader of this TablePanel's ClickableTable
    - el
```
Element el
```
      The template element that this TablePanel corresponds to.
    - isTopLevel
```
boolean isTopLevel
```
      Indicates whether or not this is a nested OMEXMLNode
    - noteButton
```
JButton noteButton
```
      The notes, add table, and delete table buttons of this TablePanel.
    - addButton
```
JButton addButton
```
      The notes, add table, and delete table buttons of this TablePanel.
    - delButton
```
JButton delButton
```
      The notes, add table, and delete table buttons of this TablePanel.
    - attrList
```
Vector<E> attrList
```
      A list of non "Ref" type attributes.
    - refList
```
Vector<E> refList
```
      A list of "Ref" type attributes.
    - tableName
```
JLabel tableName
```
      The JLabels for the title and the optional image.
    - imageLabel
```
JLabel imageLabel
```
      The JLabels for the title and the optional image.
    - tableThumb
```
BufferedImage tableThumb
```
    - tableImage
```
BufferedImage tableImage
```
- Class loci.ome.editor.MetadataPane.TabPanel extends JPanel implements Serializable
  - Serialized Fields
    - el
```
Element el
```
      The template element this TabPanel corresponds to.
    - name
```
String name
```
      The name of this TabPanel.
    - isRendered
```
boolean isRendered
```
      Whether or not this TabPanel has already been rendered.
    - oNode
```
OMEXMLNode oNode
```
      The OMEXMLNode in the current file that this TabPanel corresponds to.
    - ome
```
org.openmicroscopy.xml.OMENode ome
```
      The OMENode associated with this file
    - titlePanel
```
JPanel titlePanel
```
      The JPanel that holds this TabPanel's title header.
    - saveButton
```
JButton saveButton
```
      The "QuickSave" button for this TabPanel
- Class loci.ome.editor.NotePane extends JScrollPane implements Serializable
  - Serialized Fields
    - titlePanel
```
JPanel titlePanel
```
      The panel that holds the title header for this view.
    - chooser
```
JFileChooser chooser
```
      The filechooser for this view.
    - tPanels
```
Vector<E> tPanels
```
      A list of all TablePanels in the MetadataPane.
- Class loci.ome.editor.NotePane.ScrollablePanel extends JPanel implements Serializable
- Class loci.ome.editor.NotePanel extends JPanel implements Serializable
  - Serialized Fields
    - tableP
```
MetadataPane.TablePanel tableP
```
      The TablePanel that this NotePanel is a part of.
    - noteList
```
ClickableList noteList
```
      The JList SubClass that holds the note names.
    - textArea
```
JTextArea textArea
```
      The JTextArea that holds a note's content.
    - nameLabel
```
JLabel nameLabel
```
      The list and textarea's name labels.
    - noteLabel
```
JLabel noteLabel
```
      The list and textarea's name labels.
- Class loci.ome.editor.VariableComboEditor extends AbstractCellEditor implements Serializable
  - Serialized Fields
    - idPanels
```
Vector<E> idPanels
```
      Vectors that hold Panels that have ID (idPanels) and also all external references in the file (addPanels)
    - addPanels
```
Vector<E> addPanels
```
      Vectors that hold Panels that have ID (idPanels) and also all external references in the file (addPanels)
    - oNode
```
OMEXMLNode oNode
```
      refers to the node associated with the TablePanel that holds the table which uses this cell editor
    - tableP
```
MetadataPane.TablePanel tableP
```
      refers to the TablePanel using this editor
    - box
```
VariableComboEditor.JRowBox box
```
      holds the current combobox needed when the cell is clicked
    - refTable
```
JTable refTable
```
      holds the table of references this cell editor is for
    - iDefs
```
Hashtable<K,V> iDefs
```
      holds internal reference data found in the ome-xml file that is currently opened by MetadataPane
    - result
```
String result
```
- Class loci.ome.editor.VariableComboEditor.JRowBox extends JComboBox implements Serializable
  - Serialized Fields
    - row
```
int row
```
- Class loci.ome.editor.VariableComboRenderer extends JComboBox implements Serializable
- Class loci.ome.editor.VariableTextAreaEditor extends VariableTextEditor implements Serializable
- Class loci.ome.editor.VariableTextAreaRenderer extends JPanel implements Serializable
  - Serialized Fields
    - jl
```
JLabel jl
```
      The label that will hold the text value of this cell.
- Class loci.ome.editor.VariableTextEditor extends AbstractCellEditor implements Serializable
  - Serialized Fields
    - tableP
```
MetadataPane.TablePanel tableP
```
      Refers to the TablePanel using this editor.
    - result
```
String result
```
      The data held by the last edited TextComponent in the table.
- Class loci.ome.editor.VariableTextEditor.RowDoc extends DefaultStyledDocument implements Serializable
  - Serialized Fields
    - row
```
int row
```
- Class loci.ome.editor.VariableTextFieldEditor extends VariableTextEditor implements Serializable
- Class loci.ome.editor.WiscScanPane extends JTabbedPane implements Serializable
  - Serialized Fields
    - groupBox
```
JComboBox<E> groupBox
```
      The various GUI input components for this program.
    - exB
```
JComboBox<E> exB
```
      The various GUI input components for this program.
    - wheeB
```
JComboBox<E> wheeB
```
      The various GUI input components for this program.
    - hoB
```
JComboBox<E> hoB
```
      The various GUI input components for this program.
    - tiC
```
JCheckBox tiC
```
      The various GUI input components for this program.
    - phC
```
JCheckBox phC
```
      The various GUI input components for this program.
    - pmtC
```
JCheckBox pmtC
```
      The various GUI input components for this program.
    - firstField
```
JTextField firstField
```
      The various GUI input components for this program.
    - lastField
```
JTextField lastField
```
      The various GUI input components for this program.
    - omeField
```
JTextField omeField
```
      The various GUI input components for this program.
    - passField
```
JTextField passField
```
      The various GUI input components for this program.
    - emailField
```
JTextField emailField
```
      The various GUI input components for this program.
    - prT
```
JTextField prT
```
      The various GUI input components for this program.
    - tempT
```
JTextField tempT
```
      The various GUI input components for this program.
    - pocT
```
JTextField pocT
```
      The various GUI input components for this program.
    - tapT
```
JTextField tapT
```
      The various GUI input components for this program.
    - tiT
```
JTextField tiT
```
      The various GUI input components for this program.
    - pmtT
```
JTextField pmtT
```
      The various GUI input components for this program.
    - desA
```
JTextArea desA
```
      The various GUI input components for this program.
    - exrEle
```
Element exrEle
```
      The XML elements associated with the GUI input components.
    - exEle
```
Element exEle
```
      The XML elements associated with the GUI input components.
    - prEle
```
Element prEle
```
      The XML elements associated with the GUI input components.
    - desEle
```
Element desEle
```
      The XML elements associated with the GUI input components.
    - tiEle
```
Element tiEle
```
      The XML elements associated with the GUI input components.
    - pmtEle
```
Element pmtEle
```
      The XML elements associated with the GUI input components.
    - phEle
```
Element phEle
```
      The XML elements associated with the GUI input components.
    - setup
```
boolean setup
```
      A toggle that turns off the action listening for the GUI components when we are initializing them so that we don't needlessly change XML to what it already is.
    - ome
```
org.openmicroscopy.xml.OMENode ome
```
      The OMENode for the document being edited.
- Class loci.ome.editor.WiscScanPane.ScrollablePanel extends JPanel implements Serializable
Package loci.ome.notes
- Class loci.ome.notes.Notes extends JFrame implements Serializable
  - Serialized Fields
    - progress
```
JProgressBar progress
```
      Progress/status bar.
    - menubar
```
JMenuBar menubar
```
      Menu bar.
    - saveFile
```
JMenuItem saveFile
```
      Menu item for saving data.
    - tabPane
```
JTabbedPane tabPane
```
      Main viewing area.
    - currentTemplate
```
Template currentTemplate
```
      Current GUI template.
    - templateName
```
String templateName
```
      Current template file name.
    - foreground
```
Color foreground
```
      Foreground (font) color.
    - background
```
Color background
```
      Background color.
    - font
```
Font font
```
      Current font.
    - currentFile
```
String currentFile
```
      Name of the current image file.
    - thumb
```
Vector<E> thumb
```
      Thumbnails for the current file.
    - metadata
```
AggregateMetadata metadata
```
    - service
```
OMEXMLService service
```
Package loci.ome.notes.editor
- Class loci.ome.notes.editor.DraggableIcon extends JPanel implements Serializable
  - Serialized Fields
    - firstMouseEvent
```
MouseEvent firstMouseEvent
```
    - image
```
JPanel image
```
    - label
```
JLabel label
```
    - menu
```
JPopupMenu menu
```
    - editable
```
boolean editable
```
    - gridx
```
int gridx
```
    - gridy
```
int gridy
```
    - listener
```
ActionListener listener
```
- Class loci.ome.notes.editor.EnumWindow extends JPopupMenu implements Serializable
  - Serialized Fields
    - options
```
Vector<E> options
```
      Current list of options.
    - content
```
JPanel content
```
    - field
```
JTextField field
```
    - parent
```
TemplateEditor parent
```
- Class loci.ome.notes.editor.MappingWindow extends JPopupMenu implements Serializable
  - Serialized Fields
    - parent
```
TemplateEditor parent
```
    - nameMap
```
boolean nameMap
```
    - tabPane
```
JTabbedPane tabPane
```
- Class loci.ome.notes.editor.PictureTransferHandler extends TransferHandler implements Serializable
  - Serialized Fields
    - pictureFlavor
```
DataFlavor pictureFlavor
```
    - icon
```
DraggableIcon icon
```
- Class loci.ome.notes.editor.TemplateEditor extends JFrame implements Serializable
  - Serialized Fields
    - tabPane
```
JTabbedPane tabPane
```
      Main editing panel.
    - componentPane
```
JPanel componentPane
```
      Panel containing drag-and-drop components.
    - currentFile
```
String currentFile
```
      Current file name.
    - newTabName
```
JTextField newTabName
```
    - pictureHandler
```
PictureTransferHandler pictureHandler
```
    - lastMenuX
```
int lastMenuX
```
    - lastMenuY
```
int lastMenuY
```
    - lastMenuComponent
```
JComponent lastMenuComponent
```
    - icons
```
Hashtable<K,V>[] icons
```
    - fields
```
Hashtable<K,V>[] fields
```
Package loci.ome.viewer
- Class loci.ome.viewer.MetadataPane extends JPanel implements Serializable
  - Serialized Fields
    - xmlTree
```
JSplitPane xmlTree
```
      Pane containing XML tree.
    - tree
```
JTree tree
```
      Tree displaying metadata in OME-XML format.
    - cdata
```
JTextArea cdata
```
      Field listing CDATA for the given XML element.
    - treeTable
```
JTable treeTable
```
      Table listing OME-XML attributes.
    - treeTableModel
```
DefaultTableModel treeTableModel
```
      Table model backing OME-XML attributes table.
    - rawPanel
```
JPanel rawPanel
```
      Panel containing raw XML dump.
    - rawText
```
JTextArea rawText
```
      Text area displaying raw XML.
    - raw
```
boolean raw
```
      Whether XML is being displayed in raw form.
- Class loci.ome.viewer.MetadataViewer extends JFrame implements Serializable
  - Serialized Fields
    - chooser
```
JFileChooser chooser
```
    - metadata
```
MetadataPane metadata
```

Package loci.plugins.config

Class loci.plugins.config.ConfigWindow extends JFrame implements Serializable

Serialized Fields

formatsListModel
```
DefaultListModel<E> formatsListModel
```
formatsList
```
JList<E> formatsList
```
formatInfo
```
JPanel formatInfo
```
extensions
```
JTextField extensions
```
enabledBox
```
JCheckBox enabledBox
```
windowlessBox
```
JCheckBox windowlessBox
```
upgradeBox
```
JCheckBox upgradeBox
```
libsListModel
```
DefaultListModel<E> libsListModel
```
libsList
```
JList<E> libsList
```
type
```
JTextField type
```
status
```
JTextField status
```
version
```
JTextField version
```
path
```
JTextField path
```
url
```
JTextField url
```
license
```
JTextField license
```
notes
```
JTextArea notes
```
log
```
PrintWriter log
```

Class loci.plugins.config.InstallWizard extends JFrame implements Serializable

Package loci.plugins.in
- Class loci.plugins.in.ImporterMetadata extends HashMap<String,Object> implements Serializable
Package loci.plugins.shortcut
- Class loci.plugins.shortcut.ShortcutPanel extends JPanel implements Serializable
- Class loci.plugins.shortcut.ShortcutTransferHandler extends TransferHandler implements Serializable
  - Serialized Fields
    - shortcutPanel
```
ShortcutPanel shortcutPanel
```
      Associated shortcut panel.
Package loci.plugins.util
- Class loci.plugins.util.BrowserOptionsWindow extends JFrame implements Serializable
- Class loci.plugins.util.DataBrowser extends StackWindow implements Serializable
  - Serialized Fields
    - fpsSpin
```
JSpinner fpsSpin
```
    - animate
```
Button animate
```
    - options
```
Button options
```
    - metadata
```
Button metadata
```
    - anim
```
boolean anim
```
    - allowShow
```
boolean allowShow
```
    - metaWindow
```
XMLWindow metaWindow
```
    - optionsWindow
```
BrowserOptionsWindow optionsWindow
```
    - xml
```
String xml
```
    - zScroll
```
Scrollbar zScroll
```
    - cScroll
```
Scrollbar cScroll
```
    - tScroll
```
Scrollbar tScroll
```
    - cSliders
```
Scrollbar[] cSliders
```
    - cLengths
```
int[] cLengths
```
    - cIndex
```
int[] cIndex
```
- Class loci.plugins.util.SearchableWindow extends TextWindow implements Serializable
  - Serialized Fields
    - panel
```
TextPanel panel
```
    - index
```
int index
```
Package loci.poi.hpsf
- Class loci.poi.hpsf.CustomProperties extends HashMap implements Serializable
  - Serialized Fields
    - dictionaryIDToName
```
Map<K,V> dictionaryIDToName
```
      Maps property IDs to property names.
    - dictionaryNameToID
```
Map<K,V> dictionaryNameToID
```
      Maps property names to property IDs.
    - isPure
```
boolean isPure
```
      Tells whether this object is pure or not.
- Class loci.poi.hpsf.HPSFException extends Exception implements Serializable
  - Serialized Fields
    - reason
```
Throwable reason
```
      The underlying reason for this exception - may be null.
- Class loci.poi.hpsf.HPSFRuntimeException extends RuntimeException implements Serializable
  - Serialized Fields
    - reason
```
Throwable reason
```
      The underlying reason for this exception - may be null.
- Class loci.poi.hpsf.IllegalPropertySetDataException extends HPSFRuntimeException implements Serializable
- Class loci.poi.hpsf.IllegalVariantTypeException extends VariantTypeException implements Serializable
- Class loci.poi.hpsf.MarkUnsupportedException extends HPSFException implements Serializable
- Class loci.poi.hpsf.MissingSectionException extends HPSFRuntimeException implements Serializable
- Class loci.poi.hpsf.NoFormatIDException extends HPSFRuntimeException implements Serializable
- Class loci.poi.hpsf.NoPropertySetStreamException extends HPSFException implements Serializable
- Class loci.poi.hpsf.NoSingleSectionException extends HPSFRuntimeException implements Serializable
- Class loci.poi.hpsf.ReadingNotSupportedException extends UnsupportedVariantTypeException implements Serializable
- Class loci.poi.hpsf.UnexpectedPropertySetTypeException extends HPSFException implements Serializable
- Class loci.poi.hpsf.UnsupportedVariantTypeException extends VariantTypeException implements Serializable
- Class loci.poi.hpsf.VariantTypeException extends HPSFException implements Serializable
  - Serialized Fields
    - value
```
Object value
```
    - variantType
```
long variantType
```
- Class loci.poi.hpsf.WritingNotSupportedException extends UnsupportedVariantTypeException implements Serializable
Package loci.poi.hpsf.wellknown
- Class loci.poi.hpsf.wellknown.PropertyIDMap extends HashMap implements Serializable
- Class loci.poi.hpsf.wellknown.SectionIDMap extends HashMap implements Serializable
Package loci.poi.hssf.dev
- Class loci.poi.hssf.dev.EFHSSF extends Object implements Serializable
Package loci.poi.hssf.eventusermodel
- Class loci.poi.hssf.eventusermodel.HSSFUserException extends Exception implements Serializable
  - Serialized Fields
    - reason
```
Throwable reason
```
Package loci.poi.hssf.record
- Class loci.poi.hssf.record.RecordFormatException extends RuntimeException implements Serializable
Package loci.poi.poifs.filesystem
- Class loci.poi.poifs.filesystem.OfficeXmlFileException extends IllegalArgumentException implements Serializable
Package loci.poi.util
- Class loci.poi.util.LittleEndian.BufferUnderrunException extends IOException implements Serializable
Package loci.tests
- Class loci.tests.ImageTester extends JPanel implements Serializable
  - Serialized Fields
    - img
```
BufferedImage[][] img
```
Package ome.metakit
- Class ome.metakit.MetakitException extends Exception implements Serializable
Package ome.xml.model.enums
- Class ome.xml.model.enums.EnumerationException extends Exception implements Serializable

Serialized Form

Package com.sun.media.imageioimpl.common

Class com.sun.media.imageioimpl.common.BogusColorSpace extends ColorSpace implements Serializable

Class com.sun.media.imageioimpl.common.InvertedCMYKColorSpace extends ColorSpace implements Serializable

Serialized Fields

csRGB

Class com.sun.media.imageioimpl.common.SimpleCMYKColorSpace extends ColorSpace implements Serializable

Serialized Fields

csRGB

Package jj2000.j2k

Class jj2000.j2k.NoNextElementException extends RuntimeException implements Serializable

Class jj2000.j2k.NotImplementedError extends Error implements Serializable

Package jj2000.j2k.codestream

Class jj2000.j2k.codestream.CorruptedCodestreamException extends IOException implements Serializable

Package jj2000.j2k.util

Class jj2000.j2k.util.StringFormatException extends IllegalArgumentException implements Serializable

Package loci.common

Class loci.common.HandleException extends IOException implements Serializable

Class loci.common.IniList extends ArrayList<IniTable> implements Serializable

Class loci.common.IniTable extends HashMap<String,String> implements Serializable

Class loci.common.ReflectException extends Exception implements Serializable

Package loci.common.enumeration

Class loci.common.enumeration.EnumException extends RuntimeException implements Serializable

Package loci.common.services

Class loci.common.services.DependencyException extends Exception implements Serializable

Serialized Fields

failureClass

Class loci.common.services.ServiceException extends Exception implements Serializable

Package loci.formats

Class loci.formats.FormatException extends Exception implements Serializable

Class loci.formats.MissingLibraryException extends FormatException implements Serializable

Class loci.formats.UnknownFormatException extends FormatException implements Serializable

Class loci.formats.UnsupportedCompressionException extends FormatException implements Serializable

Package loci.formats.cache

Class loci.formats.cache.CacheException extends FormatException implements Serializable

Package loci.formats.gui

Class loci.formats.gui.CacheComponent extends JPanel implements Serializable

Serialized Fields

cache

sourceChooser

strategyChooser

range

priority

order

id

lengths

Class loci.formats.gui.CacheIndicator extends JComponent implements Serializable

Serialized Fields

cache

axis

comp

lPad

rPad

Class loci.formats.gui.DataConverter extends JFrame implements Serializable

Serialized Fields

reader

swap

biReader

writer

biWriter

rc

wc

shutdown

force

input

output

qtJava

forceType

includeZ

includeT

includeC

zLabel

tLabel

cLabel

zChoice

tChoice

cChoice

codec

fps

series