ome.xml.model

Class Dataset

java.lang.Object

ome.xml.model.AbstractOMEModelObject

ome.xml.model.Dataset

All Implemented Interfaces:

OMEModelObject

public class Dataset
extends AbstractOMEModelObject

Field Summary

Fields

Modifier and Type	Field and Description
static String	NAMESPACE

Constructor Summary

Constructors

Constructor and Description
Dataset() Default constructor.
Dataset(Element element, OMEModel model) Constructs Dataset recursively from an XML DOM tree.

Method Summary

Methods

Modifier and Type	Method and Description
Element	asXMLElement(Document document) Takes the entire object hierarchy and produces an XML DOM tree.
protected Element	asXMLElement(Document document, Element Dataset_element) Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
List<Annotation>	copyLinkedAnnotationList()
List<Image>	copyLinkedImageList()
List<Project>	copyLinkedProjectList()
String	getDescription()
String	getID()
Annotation	getLinkedAnnotation(int index)
Experimenter	getLinkedExperimenter()
ExperimenterGroup	getLinkedExperimenterGroup()
Image	getLinkedImage(int index)
Project	getLinkedProject(int index)
String	getName()
boolean	link(Reference reference, OMEModelObject o) Link a given OME model object to this model object.
boolean	linkAnnotation(Annotation o)
void	linkExperimenter(Experimenter o)
void	linkExperimenterGroup(ExperimenterGroup o)
boolean	linkImage(Image o)
boolean	linkProject(Project o)
void	setDescription(String description)
void	setID(String id)
Annotation	setLinkedAnnotation(int index, Annotation o)
Image	setLinkedImage(int index, Image o)
Project	setLinkedProject(int index, Project o)
void	setName(String name)
int	sizeOfLinkedAnnotationList()
int	sizeOfLinkedImageList()
int	sizeOfLinkedProjectList()
boolean	unlinkAnnotation(Annotation o)
void	unlinkExperimenter(Experimenter o)
void	unlinkExperimenterGroup(ExperimenterGroup o)
boolean	unlinkImage(Image o)
boolean	unlinkProject(Project o)
void	update(Element element, OMEModel model) Updates Dataset recursively from an XML DOM tree.

Methods inherited from class ome.xml.model.AbstractOMEModelObject

getChildrenByTagName, stripNamespacePrefix, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAMESPACE

public static final String NAMESPACE

See Also:

Constant Field Values

Constructor Detail

Dataset

public Dataset()

Default constructor.

Dataset

public Dataset(Element element,
       OMEModel model)
        throws EnumerationException

Constructs Dataset recursively from an XML DOM tree.

Parameters:

element - Root of the XML DOM tree to construct a model object graph from.

model - Handler for the OME model which keeps track of instances and references seen during object population.

Throws:

EnumerationException - If there is an error instantiating an enumeration during model object creation.

Method Detail

update

public void update(Element element,
          OMEModel model)
            throws EnumerationException

Updates Dataset recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.

Specified by:

update in interface OMEModelObject

Overrides:

update in class AbstractOMEModelObject

Parameters:

element - Root of the XML DOM tree to construct a model object graph from.

model - Handler for the OME model which keeps track of instances and references seen during object population.

Throws:

EnumerationException - If there is an error instantiating an enumeration during model object creation.

link

public boolean link(Reference reference,
           OMEModelObject o)

Description copied from interface: OMEModelObject

Link a given OME model object to this model object.

Specified by:

link in interface OMEModelObject

Overrides:

link in class AbstractOMEModelObject

Parameters:

reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.

o - Model object to link to.

Returns:

true if this model object was able to handle the reference, false otherwise.

getName

public String getName()

setName

public void setName(String name)

getID

public String getID()

setID

public void setID(String id)

getDescription

public String getDescription()

setDescription

public void setDescription(String description)

getLinkedExperimenter

public Experimenter getLinkedExperimenter()

linkExperimenter

public void linkExperimenter(Experimenter o)

unlinkExperimenter

public void unlinkExperimenter(Experimenter o)

getLinkedExperimenterGroup

public ExperimenterGroup getLinkedExperimenterGroup()

linkExperimenterGroup

public void linkExperimenterGroup(ExperimenterGroup o)

unlinkExperimenterGroup

public void unlinkExperimenterGroup(ExperimenterGroup o)

sizeOfLinkedImageList

public int sizeOfLinkedImageList()

copyLinkedImageList

public List<Image> copyLinkedImageList()

getLinkedImage

public Image getLinkedImage(int index)

setLinkedImage

public Image setLinkedImage(int index,
                   Image o)

linkImage

public boolean linkImage(Image o)

unlinkImage

public boolean unlinkImage(Image o)

sizeOfLinkedAnnotationList

public int sizeOfLinkedAnnotationList()

copyLinkedAnnotationList

public List<Annotation> copyLinkedAnnotationList()

getLinkedAnnotation

public Annotation getLinkedAnnotation(int index)

setLinkedAnnotation

public Annotation setLinkedAnnotation(int index,
                             Annotation o)

linkAnnotation

public boolean linkAnnotation(Annotation o)

unlinkAnnotation

public boolean unlinkAnnotation(Annotation o)

sizeOfLinkedProjectList

public int sizeOfLinkedProjectList()

copyLinkedProjectList

public List<Project> copyLinkedProjectList()

getLinkedProject

public Project getLinkedProject(int index)

setLinkedProject

public Project setLinkedProject(int index,
                       Project o)

linkProject

public boolean linkProject(Project o)

unlinkProject

public boolean unlinkProject(Project o)

asXMLElement

public Element asXMLElement(Document document)

Description copied from interface: OMEModelObject

Takes the entire object hierarchy and produces an XML DOM tree.

Specified by:

asXMLElement in interface OMEModelObject

Specified by:

asXMLElement in class AbstractOMEModelObject

Parameters:

document - Destination document for element creation, etc.

Returns:

XML DOM tree root element for this model object.

asXMLElement

protected Element asXMLElement(Document document,
                   Element Dataset_element)

Description copied from class: AbstractOMEModelObject

Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.

Overrides:

asXMLElement in class AbstractOMEModelObject

Parameters:

document - Destination document for element creation, etc.

Dataset_element - Element from the subclass. If null a new element will be created of this class.

Returns:

element populated with properties from this class.