ome.xml

Class OMEXMLFactory

java.lang.Object

ome.xml.OMEXMLFactory

Deprecated.

The r2003fc classes are replaced by the ome.xml.model classes

@Deprecated
public final class OMEXMLFactory
extends Object

OMEXMLFactory is a factory for creating OME-XML node hierarchies.

Source code:

Trac, Gitweb

Field Summary

Fields

Modifier and Type	Field and Description
static String	LATEST_VERSION Deprecated. Latest OME-XML version namespace.
protected static String	LEGACY_SKELETON Deprecated. Basic skeleton for an OME-XML root node with 2003-FC legacy schema.
protected static String	SKELETON Deprecated. Basic skeleton for an OME-XML root node with modern schema.

Method Summary

Methods

Modifier and Type	Method and Description
static OMEXMLNode	newOMENode() Deprecated. Constructs a new, empty OME-XML root node of the latest schema version.
static OMEXMLNode	newOMENode(String version) Deprecated. Constructs a new, empty OME-XML root node of the given schema version.
static OMEXMLNode	newOMENodeFromSource(Document doc) Deprecated. Constructs an OME-XML root node from the given DOM tree.
static OMEXMLNode	newOMENodeFromSource(File file) Deprecated. Constructs an OME-XML root node from the given file on disk.
static OMEXMLNode	newOMENodeFromSource(String xml) Deprecated. Constructs an OME-XML root node from the given XML string.
static Document	parseOME(File file) Deprecated. Parses a DOM from the given OME-XML file on disk.
static Document	parseOME(InputStream is) Deprecated. Parses a DOM from the given OME-XML input stream.
static Document	parseOME(String xml) Deprecated. Parses a DOM from the given OME-XML string.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

LATEST_VERSION

public static final String LATEST_VERSION

Deprecated.

Latest OME-XML version namespace.

See Also:

Constant Field Values

SKELETON

protected static final String SKELETON

Deprecated.

Basic skeleton for an OME-XML root node with modern schema.

See Also:

Constant Field Values

LEGACY_SKELETON

protected static final String LEGACY_SKELETON

Deprecated.

Basic skeleton for an OME-XML root node with 2003-FC legacy schema.

See Also:

Constant Field Values

Method Detail

newOMENode

public static OMEXMLNode newOMENode()
                             throws ParserConfigurationException,
                                    SAXException,
                                    IOException

Deprecated.

Constructs a new, empty OME-XML root node of the latest schema version.

Throws:

ParserConfigurationException

SAXException

IOException

newOMENode

public static OMEXMLNode newOMENode(String version)
                             throws ParserConfigurationException,
                                    SAXException,
                                    IOException

Deprecated.

Constructs a new, empty OME-XML root node of the given schema version.

Parameters:

version - The schema version (e.g., 2007-06) to use for the OME-XML.

Throws:

ParserConfigurationException

SAXException

IOException

newOMENodeFromSource

public static OMEXMLNode newOMENodeFromSource(File file)
                                       throws ParserConfigurationException,
                                              SAXException,
                                              IOException

Deprecated.

Constructs an OME-XML root node from the given file on disk.

Throws:

ParserConfigurationException

SAXException

IOException

newOMENodeFromSource

public static OMEXMLNode newOMENodeFromSource(String xml)
                                       throws ParserConfigurationException,
                                              SAXException,
                                              IOException

Deprecated.

Constructs an OME-XML root node from the given XML string.

Throws:

ParserConfigurationException

SAXException

IOException

newOMENodeFromSource

public static OMEXMLNode newOMENodeFromSource(Document doc)

Deprecated.

Constructs an OME-XML root node from the given DOM tree.

parseOME

public static Document parseOME(File file)
                         throws ParserConfigurationException,
                                SAXException,
                                IOException

Deprecated.

Parses a DOM from the given OME-XML file on disk.

Throws:

ParserConfigurationException

SAXException

IOException

parseOME

public static Document parseOME(String xml)
                         throws ParserConfigurationException,
                                SAXException,
                                IOException

Deprecated.

Parses a DOM from the given OME-XML string.

Throws:

ParserConfigurationException

SAXException

IOException

parseOME

public static Document parseOME(InputStream is)
                         throws ParserConfigurationException,
                                SAXException,
                                IOException

Deprecated.

Parses a DOM from the given OME-XML input stream.

Throws:

ParserConfigurationException

SAXException

IOException