FormatReaderTest (Bio-Formats API)

java.lang.Object
- loci.tests.testng.FormatReaderTest

```
public class FormatReaderTest
extends Object
```
TestNG tester for Bio-Formats file format readers. Details on failed tests are written to a log file, for easier processing. NB: loci.formats.ome and ome-xml.jar are required for some of the tests. To run tests: ant -Dtestng.directory="/path" -Dtestng.multiplier="1.0" test-all
Source code:

Trac, Gitweb

Field Summary

Fields
Modifier and Type Field and Description

static ConfigurationTree configTree
Configuration tree structure containing dataset metadata.

Fields
Modifier and Type	Field and Description
`static ConfigurationTree`	`configTree` Configuration tree structure containing dataset metadata.

Constructor Summary

Constructors
Constructor and Description

FormatReaderTest(String filename, float multiplier, boolean inMemory)

Constructors
Constructor and Description
`FormatReaderTest(String filename, float multiplier, boolean inMemory)`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`close()`
`String`	`getID()`
`void`	`setup()`
`void`	`testBufferedImageDimensions()`
`void`	`testByteArrayDimensions()`
`void`	`testChannelNames()`
`void`	`testConsistentReader()`
`void`	`testDetectors()`
`void`	`testDimensionOrder()`
`void`	`testEmissionWavelengths()`
`void`	`testEqualOMEXML()`
`void`	`testExcitationWavelengths()`
`void`	`testExposureTimes()`
`void`	`testFalseColor()`
`void`	`testImageCount()`
`void`	`testImageDescriptions()`
`void`	`testImageNames()`
`void`	`testIndexed()`
`void`	`testIsInterleaved()`
`void`	`testIsThisType()`
`void`	`testIsThisTypeConsistent()`
`void`	`testLightSources()`
`void`	`testLittleEndian()`
`void`	`testOMEXML()`
`void`	`testPerformance()`
`void`	`testPhysicalSizeX()`
`void`	`testPhysicalSizeY()`
`void`	`testPhysicalSizeZ()`
`void`	`testPixelsHashes()`
`void`	`testPixelType()`
`void`	`testRGB()`
`void`	`testSaneOMEXML()`
`void`	`testSaneUsedFiles()`
`void`	`testSeriesCount()`
`void`	`testSizeC()`
`void`	`testSizeT()`
`void`	`testSizeX()`
`void`	`testSizeY()`
`void`	`testSizeZ()`
`void`	`testSubimagePixelsHashes()`
`void`	`testThumbnailByteArrayDimensions()`
`void`	`testThumbnailImageDimensions()`
`void`	`testThumbSizeX()`
`void`	`testThumbSizeY()`
`void`	`testTimeIncrement()`
`void`	`testUnflattenedPixelsHashes()`
`void`	`testUnflattenedSubimagePixelsHashes()`
`void`	`testValidXML()`
`void`	`writeConfigFile()`
`void`	`writeXML()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- configTree
```
public static ConfigurationTree configTree
```
  Configuration tree structure containing dataset metadata.

Constructor Detail

FormatReaderTest

public FormatReaderTest(String filename,
                float multiplier,
                boolean inMemory)

Method Detail

getID
```
public String getID()
```

setup

public void setup()
           throws IOException

Throws:: IOException

close

public void close()
           throws IOException

Throws:: IOException

testBufferedImageDimensions

public void testBufferedImageDimensions()

testByteArrayDimensions
```
public void testByteArrayDimensions()
```

testThumbnailImageDimensions

public void testThumbnailImageDimensions()

testThumbnailByteArrayDimensions

public void testThumbnailByteArrayDimensions()

testImageCount
```
public void testImageCount()
```

testOMEXML
```
public void testOMEXML()
```

testConsistentReader
```
public void testConsistentReader()
```

testSaneOMEXML
```
public void testSaneOMEXML()
```

testSeriesCount
```
public void testSeriesCount()
```

testSizeX
```
public void testSizeX()
```

testSizeY
```
public void testSizeY()
```

testSizeZ
```
public void testSizeZ()
```

testSizeC
```
public void testSizeC()
```

testSizeT
```
public void testSizeT()
```

testDimensionOrder
```
public void testDimensionOrder()
```

testIsInterleaved
```
public void testIsInterleaved()
```

testIndexed
```
public void testIndexed()
```

testFalseColor
```
public void testFalseColor()
```

testRGB
```
public void testRGB()
```

testThumbSizeX
```
public void testThumbSizeX()
```

testThumbSizeY
```
public void testThumbSizeY()
```

testPixelType
```
public void testPixelType()
```

testLittleEndian
```
public void testLittleEndian()
```

testPhysicalSizeX
```
public void testPhysicalSizeX()
```

testPhysicalSizeY
```
public void testPhysicalSizeY()
```

testPhysicalSizeZ
```
public void testPhysicalSizeZ()
```

testTimeIncrement
```
public void testTimeIncrement()
```

testLightSources
```
public void testLightSources()
```

testChannelNames
```
public void testChannelNames()
```

testExposureTimes
```
public void testExposureTimes()
```

testEmissionWavelengths
```
public void testEmissionWavelengths()
```

testExcitationWavelengths

public void testExcitationWavelengths()

testDetectors
```
public void testDetectors()
```

testImageNames
```
public void testImageNames()
```

testImageDescriptions
```
public void testImageDescriptions()
```

testEqualOMEXML
```
public void testEqualOMEXML()
```

testPerformance
```
public void testPerformance()
```

testSaneUsedFiles
```
public void testSaneUsedFiles()
```

testValidXML
```
public void testValidXML()
```

testUnflattenedPixelsHashes

public void testUnflattenedPixelsHashes()

testPixelsHashes
```
public void testPixelsHashes()
```

testUnflattenedSubimagePixelsHashes

public void testUnflattenedSubimagePixelsHashes()

testSubimagePixelsHashes

public void testSubimagePixelsHashes()

testIsThisTypeConsistent

public void testIsThisTypeConsistent()

testIsThisType
```
public void testIsThisType()
```

writeConfigFile
```
public void writeConfigFile()
```

writeXML
```
public void writeXML()
```

Class FormatReaderTest

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

configTree

Constructor Detail

FormatReaderTest

Method Detail

getID

setup

close

testBufferedImageDimensions

testByteArrayDimensions

testThumbnailImageDimensions

testThumbnailByteArrayDimensions

testImageCount

testOMEXML

testConsistentReader

testSaneOMEXML

testSeriesCount

testSizeX

testSizeY

testSizeZ

testSizeC

testSizeT

testDimensionOrder

testIsInterleaved

testIndexed

testFalseColor

testRGB

testThumbSizeX

testThumbSizeY

testPixelType

testLittleEndian

testPhysicalSizeX

testPhysicalSizeY

testPhysicalSizeZ

testTimeIncrement

testLightSources

testChannelNames

testExposureTimes

testEmissionWavelengths

testExcitationWavelengths

testDetectors

testImageNames

testImageDescriptions

testEqualOMEXML

testPerformance

testSaneUsedFiles

testValidXML

testUnflattenedPixelsHashes

testPixelsHashes

testUnflattenedSubimagePixelsHashes

testSubimagePixelsHashes

testIsThisTypeConsistent

testIsThisType

writeConfigFile

writeXML