loci.ome.io

Class OMEUtils

java.lang.Object

loci.ome.io.OMEUtils

public final class OMEUtils
extends Object

Utility methods for retrieving data from an OME database.

Source code:

Trac, Gitweb

Field Summary

Fields

Modifier and Type	Field and Description
static String	URL_OME_JAVA URL of OME-Java web page.
static String	URL_OMERO_JARS URL of OMERO JAR downloads.

Method Summary

Methods

Modifier and Type	Method and Description
static void	filterPixels(String firstName, String lastName, String imageName, String created, String id, boolean isOMERO) Filter available pixels to match given criteria.
static int[]	getAllChannels(boolean isOMERO) Get the channel count of every accessible image on the server.
static String[]	getAllDates(boolean isOMERO) Get the creation date of each accessible image on the server.
static String[]	getAllDescriptions(boolean isOMERO) Get the description of each accessible image on the server.
static String[]	getAllExperimenters(boolean isOMERO) Get the names of every experimenter in the database.
static int[]	getAllHeights(boolean isOMERO) Get the height of every accessible image on the server.
static long[]	getAllIDs(boolean isOMERO) Get all of the image IDs.
static String[]	getAllNames(boolean isOMERO) Get the name of each accessible image on the server.
static BufferedImage[]	getAllThumbnails(boolean isOMERO) Get the thumbnail for each accessible image on the server.
static int[]	getAllTs(boolean isOMERO) Get the number of timepoints in each accessible image on the server.
static String[]	getAllTypes(boolean isOMERO) Get the pixel type of each accessible image on the server.
static int[]	getAllWidths(boolean isOMERO) Get the width of every accessible image on the server.
static int[]	getAllZs(boolean isOMERO) Get the number of Z slices in each accessible image on the server.
static void	login(OMECredentials credentials) Login to an OME/OMERO server.
static void	logout(boolean isOMERO) Log out of OME/OMERO server.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

URL_OMERO_JARS

public static final String URL_OMERO_JARS

URL of OMERO JAR downloads.

See Also:

Constant Field Values

URL_OME_JAVA

public static final String URL_OME_JAVA

URL of OME-Java web page.

See Also:

Constant Field Values

Method Detail

login

public static void login(OMECredentials credentials)
                  throws ReflectException

Login to an OME/OMERO server.

Throws:

ReflectException

logout

public static void logout(boolean isOMERO)

Log out of OME/OMERO server.

getAllExperimenters

public static String[] getAllExperimenters(boolean isOMERO)
                                    throws ReflectException

Get the names of every experimenter in the database.

Throws:

ReflectException

filterPixels

public static void filterPixels(String firstName,
                String lastName,
                String imageName,
                String created,
                String id,
                boolean isOMERO)
                         throws ReflectException

Filter available pixels to match given criteria.

Throws:

ReflectException

getAllWidths

public static int[] getAllWidths(boolean isOMERO)
                          throws ReflectException

Get the width of every accessible image on the server.

Throws:

ReflectException

getAllHeights

public static int[] getAllHeights(boolean isOMERO)
                           throws ReflectException

Get the height of every accessible image on the server.

Throws:

ReflectException

getAllChannels

public static int[] getAllChannels(boolean isOMERO)
                            throws ReflectException

Get the channel count of every accessible image on the server.

Throws:

ReflectException

getAllZs

public static int[] getAllZs(boolean isOMERO)
                      throws ReflectException

Get the number of Z slices in each accessible image on the server.

Throws:

ReflectException

getAllTs

public static int[] getAllTs(boolean isOMERO)
                      throws ReflectException

Get the number of timepoints in each accessible image on the server.

Throws:

ReflectException

getAllTypes

public static String[] getAllTypes(boolean isOMERO)
                            throws ReflectException

Get the pixel type of each accessible image on the server.

Throws:

ReflectException

getAllNames

public static String[] getAllNames(boolean isOMERO)
                            throws ReflectException

Get the name of each accessible image on the server.

Throws:

ReflectException

getAllDescriptions

public static String[] getAllDescriptions(boolean isOMERO)
                                   throws ReflectException

Get the description of each accessible image on the server.

Throws:

ReflectException

getAllDates

public static String[] getAllDates(boolean isOMERO)
                            throws ReflectException

Get the creation date of each accessible image on the server.

Throws:

ReflectException

getAllThumbnails

public static BufferedImage[] getAllThumbnails(boolean isOMERO)
                                        throws ReflectException

Get the thumbnail for each accessible image on the server.

Throws:

ReflectException

getAllIDs

public static long[] getAllIDs(boolean isOMERO)
                        throws ReflectException

Get all of the image IDs.

Throws:

ReflectException