38 #ifndef OME_BIOFORMATS_DETAIL_FORMATREADER_H
39 #define OME_BIOFORMATS_DETAIL_FORMATREADER_H
45 #include <boost/lexical_cast.hpp>
47 #include <ome/bioformats/FormatReader.h>
48 #include <ome/bioformats/FormatHandler.h>
86 const std::string& description):
88 description(description),
90 compression_suffixes(),
93 compression_suffixes.push_back(boost::filesystem::path(
""));
123 ome::compat::shared_ptr<std::istream>
in;
245 initFile(
const boost::filesystem::path&
id);
255 isUsedFile(
const boost::filesystem::path& file);
316 ome::compat::shared_ptr< ::ome::xml::meta::MetadataStore>
330 coremetadata_list_type::value_type cm(core.at(index));
332 throw std::logic_error(
"CoreMetadata null");
347 coremetadata_list_type::value_type cm(core.at(index));
349 throw std::logic_error(
"CoreMetadata null");
355 const std::set<MetadataOptions::MetadataLevel>&
387 isThisType(
const boost::filesystem::path& name,
388 bool open =
true)
const;
393 std::size_t length)
const;
398 const uint8_t *end)
const;
526 ome::compat::array<dimension_size_type, 2>
597 close(
bool fileOnly =
false);
652 const std::vector<boost::filesystem::path>
656 const std::vector<boost::filesystem::path>
660 std::vector<FileInfo>
664 std::vector<FileInfo>
668 const boost::optional<boost::filesystem::path>&
687 ome::compat::array<dimension_size_type, 3>
691 ome::compat::array<dimension_size_type, 6>
695 const std::vector<ome::compat::shared_ptr< ::ome::bioformats::CoreMetadata> >&
708 setMetadataStore(ome::compat::shared_ptr< ::ome::xml::meta::MetadataStore>& store);
711 const ome::compat::shared_ptr< ::ome::xml::meta::MetadataStore>&
715 ome::compat::shared_ptr< ::ome::xml::meta::MetadataStore>&
719 std::vector<ome::compat::shared_ptr< ::ome::bioformats::FormatReader> >
735 const std::vector<std::string>&
743 const std::vector<std::string>&
800 setId(
const boost::filesystem::path&
id);
811 const std::vector<boost::filesystem::path>&
815 const std::vector<boost::filesystem::path>&
823 #endif // OME_BIOFORMATS_DETAIL_FORMATREADER_H
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
PixelType enumeration.
Definition: PixelType.h:70