bioformats  5.1.3
MicrobeamManipulation.h
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38 
39 /*─────────────────────────────────────────────────────────────────────────────
40  *
41  * THIS IS AUTOMATICALLY GENERATED CODE. DO NOT MODIFY.
42  *
43  *─────────────────────────────────────────────────────────────────────────────
44  */
45 
46 #ifndef OME_XML_MODEL_MICROBEAMMANIPULATION_H
47 #define OME_XML_MODEL_MICROBEAMMANIPULATION_H
48 
49 #include <algorithm>
50 #include <list>
51 #include <stdexcept>
52 #include <string>
53 #include <vector>
54 
55 #include <ome/common/log.h>
56 
57 #include <ome/common/xml/dom/Document.h>
58 #include <ome/common/xml/dom/Element.h>
59 #include <ome/common/xml/dom/Node.h>
60 #include <ome/common/xml/dom/NodeList.h>
61 
62 #include <ome/xml/model/Experiment.h>
63 #include <ome/xml/model/Experimenter.h>
64 #include <ome/xml/model/detail/OMEModelObject.h>
65 #include <ome/xml/model/enums/MicrobeamManipulationType.h>
66 
67 namespace ome
68 {
69  namespace xml
70  {
71  namespace model
72  {
73 
74  // Forward declarations.
75  class Image;
76  class LightSourceSettings;
77  class OMEModel;
78  class ROI;
79 
84  {
85  private:
87  ome::compat::shared_ptr<ome::xml::model::enums::MicrobeamManipulationType> type;
89  std::string id;
91  ome::compat::shared_ptr<std::string> description;
95  ome::compat::weak_ptr<ome::xml::model::Experimenter> experimenter;
97  std::vector<ome::compat::shared_ptr<ome::xml::model::LightSourceSettings> > lightSourceSettingsCombinations;
101  ome::compat::weak_ptr<ome::xml::model::Experiment> experiment;
102 
103  public:
106 
113 
115  virtual
117 
118 
119 
134  static ome::compat::shared_ptr< MicrobeamManipulation>
135  create(const common::xml::dom::Element& element,
137 
138  // Documented in superclass.
139  const std::string&
140  elementName() const;
141 
142  // Documented in superclass.
143  bool
144  validElementName(const std::string& name) const;
145 
146 
147  // -- OMEModelObject API methods --
148 
150  virtual void
151  update(const common::xml::dom::Element& element,
153 
154  public:
155  // -- MicrobeamManipulation API methods --
156 
158  bool
159  link (ome::compat::shared_ptr<Reference>& reference,
160  ome::compat::shared_ptr< ome::xml::model::OMEModelObject>& object);
161 
167  ome::compat::shared_ptr<ome::xml::model::enums::MicrobeamManipulationType>
168  getType ();
169 
175  const ome::compat::shared_ptr<ome::xml::model::enums::MicrobeamManipulationType>
176  getType () const;
177 
183  void
184  setType (ome::compat::shared_ptr<ome::xml::model::enums::MicrobeamManipulationType>& type);
185 
191  const std::string&
192  getID () const;
193 
199  void
200  setID (const std::string& id);
201 
207  ome::compat::shared_ptr<std::string>
208  getDescription ();
209 
215  const ome::compat::shared_ptr<std::string>
216  getDescription () const;
217 
223  void
224  setDescription (ome::compat::shared_ptr<std::string>& description);
225 
232  sizeOfLinkedROIList () const;
233 
240  getLinkedROIList () const;
241 
249  const ome::compat::weak_ptr<ome::xml::model::ROI>&
251 
262  const ome::compat::weak_ptr<ome::xml::model::ROI>&
264  const ome::compat::shared_ptr<ome::xml::model::ROI>& roi);
265 
276  bool
277  linkROI (const ome::compat::shared_ptr<ome::xml::model::ROI>& roi);
278 
294  bool
295  unlinkROI (const ome::compat::shared_ptr<ome::xml::model::ROI>& roi);
296 
303  ome::compat::weak_ptr<ome::xml::model::Experimenter>
305 
312  const ome::compat::weak_ptr<ome::xml::model::Experimenter>
313  getLinkedExperimenter () const;
314 
320  void
321  linkExperimenter (ome::compat::shared_ptr<ome::xml::model::Experimenter>& experimenter);
322 
332  void
333  unlinkExperimenter (ome::compat::shared_ptr<ome::xml::model::Experimenter>& experimenter);
334 
340  std::vector<ome::compat::shared_ptr<ome::xml::model::LightSourceSettings> >::size_type
342 
349  std::vector<ome::compat::shared_ptr<ome::xml::model::LightSourceSettings> >&
351 
358  const std::vector<ome::compat::shared_ptr<ome::xml::model::LightSourceSettings> >&
360 
368  ome::compat::shared_ptr<ome::xml::model::LightSourceSettings>&
369  getLightSourceSettings (std::vector<ome::compat::shared_ptr<ome::xml::model::LightSourceSettings> >::size_type index);
370 
378  const ome::compat::shared_ptr<ome::xml::model::LightSourceSettings>&
379  getLightSourceSettings (std::vector<ome::compat::shared_ptr<ome::xml::model::LightSourceSettings> >::size_type index) const;
380 
388  void
389  setLightSourceSettings (std::vector<ome::compat::shared_ptr<ome::xml::model::LightSourceSettings> >::size_type index,
390  ome::compat::shared_ptr<ome::xml::model::LightSourceSettings>& lightSourceSettings);
391 
400  void
401  addLightSourceSettings (ome::compat::shared_ptr<ome::xml::model::LightSourceSettings>& lightSourceSettings);
402 
412  void
413  removeLightSourceSettings (ome::compat::shared_ptr<ome::xml::model::LightSourceSettings>& lightSourceSettings);
414 
421  sizeOfLinkedImageList () const;
422 
429  getLinkedImageList () const;
430 
438  const ome::compat::weak_ptr<ome::xml::model::Image>&
440 
451  const ome::compat::weak_ptr<ome::xml::model::Image>&
453  const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
454 
465  bool
466  linkImage (const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
467 
483  bool
484  unlinkImage (const ome::compat::shared_ptr<ome::xml::model::Image>& image_BackReference);
485 
491  ome::compat::weak_ptr<ome::xml::model::Experiment>
492  getExperiment ();
493 
499  const ome::compat::weak_ptr<ome::xml::model::Experiment>
500  getExperiment () const;
501 
507  void
508  setExperiment (ome::compat::weak_ptr<ome::xml::model::Experiment>& experiment_BackReference);
509 
510 
513  asXMLElement (common::xml::dom::Document& document) const;
514 
515 
516  protected:
517  // Documented in base class.
520  common::xml::dom::Element& element) const;
521 
522  public:
523  // Documented in superclass.
524  const std::string&
525  getXMLNamespace() const;
526  };
527 
528  }
529  }
530 }
531 
532 #endif // OME_XML_MODEL_MICROBEAMMANIPULATION_H
533 
534 /*
535  * Local Variables:
536  * mode:C++
537  * End:
538  */
OME model interface (abstract top-level container)
Definition: OMEModel.h:62
ome::compat::weak_ptr< ome::xml::model::Experiment > getExperiment()
Get the Experiment property.
Definition: MicrobeamManipulation.cpp:576
ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > & getLightSourceSettings(std::vector< ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > >::size_type index)
Get LightSourceSettings.
Definition: MicrobeamManipulation.cpp:478
ome::compat::weak_ptr< ome::xml::model::Experimenter > experimenter
ExperimenterRef reference.
Definition: MicrobeamManipulation.h:95
ome::compat::shared_ptr< ome::xml::model::enums::MicrobeamManipulationType > type
Type property.
Definition: MicrobeamManipulation.h:87
bool linkROI(const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
Link ROI.
Definition: MicrobeamManipulation.cpp:399
void setExperiment(ome::compat::weak_ptr< ome::xml::model::Experiment > &experiment_BackReference)
Set the Experiment property.
Definition: MicrobeamManipulation.cpp:590
std::vector< ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > > & getLightSourceSettingsList()
Get the LightSourceSettings list.
Definition: MicrobeamManipulation.cpp:466
const std::string & getID() const
Get the ID property.
Definition: MicrobeamManipulation.cpp:336
void unlinkExperimenter(ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
Unlink Experimenter.
Definition: MicrobeamManipulation.cpp:450
DOM Document wrapper.
Definition: Document.h:82
const ome::compat::weak_ptr< ome::xml::model::ROI > & setLinkedROI(OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
Set linked ROI.
Definition: MicrobeamManipulation.cpp:389
DOM Element wrapper.
Definition: Element.h:66
virtual common::xml::dom::Element asXMLElementInternal(common::xml::dom::Document &document, common::xml::dom::Element &element) const
Transform the object hierarchy rooted at this element to XML.
Definition: MicrobeamManipulation.cpp:604
OME model object (concrete implementation).
Definition: OMEModelObject.h:64
boost::multi_index_container< Ptr< T >, boost::multi_index::indexed_by< boost::multi_index::random_access<>, boost::multi_index::ordered_unique< boost::multi_index::identity< Ptr< T > >, ome::compat::owner_less< Ptr< T > > > > > type
Multi-index container type.
Definition: OMEModelObject.h:94
void removeLightSourceSettings(ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > &lightSourceSettings)
Remove LightSourceSettings.
Definition: MicrobeamManipulation.cpp:507
virtual ~MicrobeamManipulation()
Destructor.
Definition: MicrobeamManipulation.cpp:158
ome::compat::shared_ptr< ome::xml::model::enums::MicrobeamManipulationType > getType()
Get the Type property.
Definition: MicrobeamManipulation.cpp:315
std::vector< ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > > lightSourceSettingsCombinations
LightSourceSettings property (occurs more than once)
Definition: MicrobeamManipulation.h:97
const ome::compat::weak_ptr< ome::xml::model::ROI > & getLinkedROI(OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type index) const
Get linked ROI.
Definition: MicrobeamManipulation.cpp:383
Multi-index container for efficient ordered insertion and deletion of model object references...
Definition: OMEModelObject.h:85
std::string id
ID property.
Definition: MicrobeamManipulation.h:89
bool link(ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
Link a given OME model object to this model object.
Definition: MicrobeamManipulation.cpp:273
Open Microscopy Environment C++ implementation.
Definition: CoreMetadata.cpp:40
bool unlinkROI(const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
Unlink ROI.
Definition: MicrobeamManipulation.cpp:413
bool validElementName(const std::string &name) const
Check if a given element name is valid for processing by this model object.
Definition: MicrobeamManipulation.cpp:179
bool unlinkImage(const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Unlink Image.
Definition: MicrobeamManipulation.cpp:559
ome::compat::weak_ptr< ome::xml::model::Experimenter > getLinkedExperimenter()
Get linked Experimenter.
Definition: MicrobeamManipulation.cpp:431
MicrobeamManipulation()
Default constructor.
Definition: MicrobeamManipulation.cpp:125
ome::compat::weak_ptr< ome::xml::model::Experiment > experiment
Experiment_BackReference back reference.
Definition: MicrobeamManipulation.h:101
ome::compat::shared_ptr< std::string > description
Description property.
Definition: MicrobeamManipulation.h:91
MicrobeamManipulation model object.
Definition: MicrobeamManipulation.h:83
const ome::compat::weak_ptr< ome::xml::model::Image > & setLinkedImage(OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Set linked Image.
Definition: MicrobeamManipulation.cpp:536
std::vector< ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > >::size_type sizeOfLightSourceSettingsList() const
Get size of linked LightSourceSettings list.
Definition: MicrobeamManipulation.cpp:460
const std::string & elementName() const
Get the element name of this model object.
Definition: MicrobeamManipulation.cpp:172
OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type getLinkedROIList() const
Get the linked ROI list.
Definition: MicrobeamManipulation.cpp:377
void addLightSourceSettings(ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > &lightSourceSettings)
Add LightSourceSettings.
Definition: MicrobeamManipulation.cpp:499
virtual common::xml::dom::Element asXMLElement(common::xml::dom::Document &document) const
Transform the object hierarchy rooted at this element to XML.
Definition: MicrobeamManipulation.cpp:597
OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type roiLinks
ROIRef reference (occurs more than once)
Definition: MicrobeamManipulation.h:93
const std::string & getXMLNamespace() const
Get the XML namespace for this model object.
Definition: MicrobeamManipulation.cpp:713
static ome::compat::shared_ptr< MicrobeamManipulation > create(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Create a MicrobeamManipulation model object from DOM element.
Definition: MicrobeamManipulation.cpp:163
OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type getLinkedImageList() const
Get the linked Image list.
Definition: MicrobeamManipulation.cpp:524
void setType(ome::compat::shared_ptr< ome::xml::model::enums::MicrobeamManipulationType > &type)
Set the Type property.
Definition: MicrobeamManipulation.cpp:329
OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type sizeOfLinkedImageList() const
Get size of linked Image list.
Definition: MicrobeamManipulation.cpp:518
const ome::compat::weak_ptr< ome::xml::model::Image > & getLinkedImage(OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type::size_type index) const
Get linked Image.
Definition: MicrobeamManipulation.cpp:530
OMEModelObject::indexed_container< ome::xml::model::Image, ome::compat::weak_ptr >::type imageLinks
Image_BackReference back reference (occurs more than once)
Definition: MicrobeamManipulation.h:99
void setLightSourceSettings(std::vector< ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > >::size_type index, ome::compat::shared_ptr< ome::xml::model::LightSourceSettings > &lightSourceSettings)
Set LightSourceSettings.
Definition: MicrobeamManipulation.cpp:490
OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type sizeOfLinkedROIList() const
Get size of linked ROI list.
Definition: MicrobeamManipulation.cpp:371
Boost.Log compatibility.
void setDescription(ome::compat::shared_ptr< std::string > &description)
Set the Description property.
Definition: MicrobeamManipulation.cpp:364
virtual void update(const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
Update the object hierarchy recursively from an XML DOM tree.
Definition: MicrobeamManipulation.cpp:188
void setID(const std::string &id)
Set the ID property.
Definition: MicrobeamManipulation.cpp:343
bool linkImage(const ome::compat::shared_ptr< ome::xml::model::Image > &image_BackReference)
Link Image.
Definition: MicrobeamManipulation.cpp:546
void linkExperimenter(ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
Link Experimenter.
Definition: MicrobeamManipulation.cpp:444
Xerces-C modern C++ wrapper.
Definition: Base.h:53
ome::compat::shared_ptr< std::string > getDescription()
Get the Description property.
Definition: MicrobeamManipulation.cpp:350