#include <ome/xml/model/Image.h>

Inheritance diagram for ome::xml::model::Image:

Collaboration diagram for ome::xml::model::Image:

Public Member Functions
	Image ()
	Default constructor.

	Image (const Image &copy)
	Copy constructor. More...

virtual	~Image ()
	Destructor.

const std::string &	elementName () const
	Get the element name of this model object. More...

bool	validElementName (const std::string &name) const
	Check if a given element name is valid for processing by this model object. More...

virtual void	update (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

const std::string &	getID () const
	Get the ID property. More...

void	setID (const std::string &id)
	Set the ID property. More...

ome::compat::shared_ptr< std::string >	getName ()
	Get the Name property. More...

const ome::compat::shared_ptr< std::string >	getName () const
	Get the Name property. More...

void	setName (ome::compat::shared_ptr< std::string > &name)
	Set the Name property. More...

ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp >	getAcquisitionDate ()
	Get the AcquisitionDate property. More...

const ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp >	getAcquisitionDate () const
	Get the AcquisitionDate property. More...

void	setAcquisitionDate (ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp > &acquisitionDate)
	Set the AcquisitionDate property. More...

ome::compat::weak_ptr< ome::xml::model::Experimenter >	getLinkedExperimenter ()
	Get linked Experimenter. More...

const ome::compat::weak_ptr< ome::xml::model::Experimenter >	getLinkedExperimenter () const
	Get linked Experimenter. More...

void	linkExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
	Link Experimenter. More...

void	unlinkExperimenter (ome::compat::shared_ptr< ome::xml::model::Experimenter > &experimenter)
	Unlink Experimenter. More...

ome::compat::shared_ptr< std::string >	getDescription ()
	Get the Description property. More...

const ome::compat::shared_ptr< std::string >	getDescription () const
	Get the Description property. More...

void	setDescription (ome::compat::shared_ptr< std::string > &description)
	Set the Description property. More...

ome::compat::weak_ptr< ome::xml::model::Experiment >	getLinkedExperiment ()
	Get linked Experiment. More...

const ome::compat::weak_ptr< ome::xml::model::Experiment >	getLinkedExperiment () const
	Get linked Experiment. More...

void	linkExperiment (ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)
	Link Experiment. More...

void	unlinkExperiment (ome::compat::shared_ptr< ome::xml::model::Experiment > &experiment)
	Unlink Experiment. More...

ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup >	getLinkedExperimenterGroup ()
	Get linked ExperimenterGroup. More...

const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup >	getLinkedExperimenterGroup () const
	Get linked ExperimenterGroup. More...

void	linkExperimenterGroup (ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)
	Link ExperimenterGroup. More...

void	unlinkExperimenterGroup (ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > &experimenterGroup)
	Unlink ExperimenterGroup. More...

ome::compat::weak_ptr< ome::xml::model::Instrument >	getLinkedInstrument ()
	Get linked Instrument. More...

const ome::compat::weak_ptr< ome::xml::model::Instrument >	getLinkedInstrument () const
	Get linked Instrument. More...

void	linkInstrument (ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)
	Link Instrument. More...

void	unlinkInstrument (ome::compat::shared_ptr< ome::xml::model::Instrument > &instrument)
	Unlink Instrument. More...

ome::compat::shared_ptr< ome::xml::model::ObjectiveSettings >	getObjectiveSettings ()
	Get the ObjectiveSettings property. More...

const ome::compat::shared_ptr< ome::xml::model::ObjectiveSettings >	getObjectiveSettings () const
	Get the ObjectiveSettings property. More...

void	setObjectiveSettings (ome::compat::shared_ptr< ome::xml::model::ObjectiveSettings > &objectiveSettings)
	Set the ObjectiveSettings property. More...

ome::compat::shared_ptr< ome::xml::model::ImagingEnvironment >	getImagingEnvironment ()
	Get the ImagingEnvironment property. More...

const ome::compat::shared_ptr< ome::xml::model::ImagingEnvironment >	getImagingEnvironment () const
	Get the ImagingEnvironment property. More...

void	setImagingEnvironment (ome::compat::shared_ptr< ome::xml::model::ImagingEnvironment > &imagingEnvironment)
	Set the ImagingEnvironment property. More...

ome::compat::shared_ptr< ome::xml::model::StageLabel >	getStageLabel ()
	Get the StageLabel property. More...

const ome::compat::shared_ptr< ome::xml::model::StageLabel >	getStageLabel () const
	Get the StageLabel property. More...

void	setStageLabel (ome::compat::shared_ptr< ome::xml::model::StageLabel > &stageLabel)
	Set the StageLabel property. More...

ome::compat::shared_ptr< ome::xml::model::Pixels >	getPixels ()
	Get the Pixels property. More...

const ome::compat::shared_ptr< ome::xml::model::Pixels >	getPixels () const
	Get the Pixels property. More...

void	setPixels (ome::compat::shared_ptr< ome::xml::model::Pixels > &pixels)
	Set the Pixels property. More...

OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedROIList () const
	Get size of linked ROI list. More...

OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type	getLinkedROIList () const
	Get the linked ROI list. More...

const ome::compat::weak_ptr< ome::xml::model::ROI > &	getLinkedROI (OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type index) const
	Get linked ROI. More...

const ome::compat::weak_ptr< ome::xml::model::ROI > &	setLinkedROI (OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
	Set linked ROI. More...

bool	linkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
	Link ROI. More...

bool	unlinkROI (const ome::compat::shared_ptr< ome::xml::model::ROI > &roi)
	Unlink ROI. More...

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedMicrobeamManipulationList () const
	Get size of linked MicrobeamManipulation list. More...

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type	getLinkedMicrobeamManipulationList () const
	Get the linked MicrobeamManipulation list. More...

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > &	getLinkedMicrobeamManipulation (OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index) const
	Get linked MicrobeamManipulation. More...

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > &	setLinkedMicrobeamManipulation (OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)
	Set linked MicrobeamManipulation. More...

bool	linkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)
	Link MicrobeamManipulation. More...

bool	unlinkMicrobeamManipulation (const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &microbeamManipulation)
	Unlink MicrobeamManipulation. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedAnnotationList () const
	Get size of linked Annotation list. More...

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type	getLinkedAnnotationList () const
	Get the linked Annotation list. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	getLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Annotation. More...

const ome::compat::weak_ptr< ome::xml::model::Annotation > &	setLinkedAnnotation (OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Set linked Annotation. More...

bool	linkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Link Annotation. More...

bool	unlinkAnnotation (const ome::compat::shared_ptr< ome::xml::model::Annotation > &annotation)
	Unlink Annotation. More...

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedDatasetList () const
	Get size of linked Dataset list. More...

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type	getLinkedDatasetList () const
	Get the linked Dataset list. More...

const ome::compat::weak_ptr< ome::xml::model::Dataset > &	getLinkedDataset (OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index) const
	Get linked Dataset. More...

const ome::compat::weak_ptr< ome::xml::model::Dataset > &	setLinkedDataset (OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
	Set linked Dataset. More...

bool	linkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
	Link Dataset. More...

bool	unlinkDataset (const ome::compat::shared_ptr< ome::xml::model::Dataset > &dataset_BackReference)
	Unlink Dataset. More...

OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type::size_type	sizeOfLinkedWellSampleList () const
	Get size of linked WellSample list. More...

OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type	getLinkedWellSampleList () const
	Get the linked WellSample list. More...

const ome::compat::weak_ptr< ome::xml::model::WellSample > &	getLinkedWellSample (OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type::size_type index) const
	Get linked WellSample. More...

const ome::compat::weak_ptr< ome::xml::model::WellSample > &	setLinkedWellSample (OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type::size_type index, const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample_BackReference)
	Set linked WellSample. More...

bool	linkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample_BackReference)
	Link WellSample. More...

bool	unlinkWellSample (const ome::compat::shared_ptr< ome::xml::model::WellSample > &wellSample_BackReference)
	Unlink WellSample. More...

virtual common::xml::dom::Element	asXMLElement (common::xml::dom::Document &document) const
	Transform the object hierarchy rooted at this element to XML. More...

const std::string &	getXMLNamespace () const
	Get the XML namespace for this model object. More...

Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
virtual	~OMEModelObject ()
	Destructor.

virtual void	update (const common::xml::dom::Element &element,::ome::xml::model::OMEModel &model)
	Update the object hierarchy recursively from an XML DOM tree. More...

virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< ::ome::xml::model::OMEModelObject > &object)
	Link a given OME model object to this model object. More...

Public Member Functions inherited from ome::xml::model::OMEModelObject
virtual bool	link (ome::compat::shared_ptr< Reference > &reference, ome::compat::shared_ptr< OMEModelObject > &object)=0
	Link a given OME model object to this model object. More...

Static Public Member Functions
static ome::compat::shared_ptr< Image >	create (const common::xml::dom::Element &element, ome::xml::model::OMEModel &model)
	Create a Image model object from DOM element. More...

Static Public Member Functions inherited from ome::xml::model::detail::OMEModelObject
static std::vector< common::xml::dom::Element >	getChildrenByTagName (const common::xml::dom::Element &parent, const std::string &name)
	Retrieve all the children of an element that have a given tag name. More...

static std::string	stripNamespacePrefix (const std::string &value)
	Strip the namespace prefix from a tag name. More...

Protected Member Functions
virtual common::xml::dom::Element	asXMLElementInternal (common::xml::dom::Document &document, common::xml::dom::Element &element) const
	Transform the object hierarchy rooted at this element to XML. More...

Protected Member Functions inherited from ome::xml::model::detail::OMEModelObject
	OMEModelObject (const std::string &objectType="OMEModelObject")
	Constructor.

	OMEModelObject (const OMEModelObject &copy)
	Copy constructor. More...

template<class C , typename T >
bool	contains (const C &container, const ome::compat::shared_ptr< T > &element)
	Check if a container contains a particular element. More...

Protected Member Functions inherited from ome::xml::model::OMEModelObject
	OMEModelObject ()
	Constructor.

Private Attributes
std::string	id
	ID property.

ome::compat::shared_ptr< std::string >	name
	Name property.

ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp >	acquisitionDate
	AcquisitionDate property.

ome::compat::weak_ptr< ome::xml::model::Experimenter >	experimenter
	ExperimenterRef reference.

ome::compat::shared_ptr< std::string >	description
	Description property.

ome::compat::weak_ptr< ome::xml::model::Experiment >	experiment
	ExperimentRef reference.

ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup >	experimenterGroup
	ExperimenterGroupRef reference.

ome::compat::weak_ptr< ome::xml::model::Instrument >	instrument
	InstrumentRef reference.

ome::compat::shared_ptr< ome::xml::model::ObjectiveSettings >	objectiveSettings
	ObjectiveSettings property.

ome::compat::shared_ptr< ome::xml::model::ImagingEnvironment >	imagingEnvironment
	ImagingEnvironment property.

ome::compat::shared_ptr< ome::xml::model::StageLabel >	stageLabel
	StageLabel property.

ome::compat::shared_ptr< ome::xml::model::Pixels >	pixels
	Pixels property.

OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type	roiLinks
	ROIRef reference (occurs more than once)

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type	microbeamManipulationLinks
	MicrobeamManipulationRef reference (occurs more than once)

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type	annotationLinks
	AnnotationRef reference (occurs more than once)

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type	datasetLinks
	Dataset_BackReference back reference (occurs more than once)

OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type	wellSamples
	WellSample_BackReference back reference (occurs more than once)

Additional Inherited Members
Protected Attributes inherited from ome::xml::model::detail::OMEModelObject
ome::common::Logger	logger
	Message logger.

Detailed Description

Image model object.

Constructor & Destructor Documentation

ome::xml::model::Image::Image ( const Image & copy )

Copy constructor.

Parameters

copy	the Image to copy.

Member Function Documentation

common::xml::dom::Element ome::xml::model::Image::asXMLElement ( common::xml::dom::Document & document ) const

virtual

Transform the object hierarchy rooted at this element to XML.

Parameters

document document for element creation

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::OMEModelObject.

References asXMLElementInternal(), and ome::common::xml::dom::Document::createElementNS().

common::xml::dom::Element ome::xml::model::Image::asXMLElementInternal	(	common::xml::dom::Document &	document,
		common::xml::dom::Element &	element
	)		const

protectedvirtual

Transform the object hierarchy rooted at this element to XML.

This internal implementation of asXMLelement also requires an XML element, which must not be null, or may be instantiated and passed from superclasses.

Parameters

document	XML document for element creation.
element	XML element for setting model data.

Returns: an XML DOM tree root element for this model object.

Implements ome::xml::model::detail::OMEModelObject.

References acquisitionDate, annotationLinks, ome::common::xml::dom::Node::appendChild(), ome::xml::model::detail::OMEModelObject::asXMLElementInternal(), ome::common::xml::dom::Document::createElementNS(), description, experiment, experimenter, experimenterGroup, id, imagingEnvironment, instrument, microbeamManipulationLinks, name, objectiveSettings, pixels, roiLinks, ome::common::xml::dom::Element::setAttribute(), and stageLabel.

Referenced by asXMLElement().

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ome::compat::shared_ptr< Image > ome::xml::model::Image::create	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

static

Create a Image model object from DOM element.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Returns: a new model object.

Referenced by ome::xml::model::OME::update().

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const std::string & ome::xml::model::Image::elementName ( ) const

virtual

Get the element name of this model object.

This will be the most-derived class name.

Returns: the element type.

Implements ome::xml::model::OMEModelObject.

ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp > ome::xml::model::Image::getAcquisitionDate ( )

Get the AcquisitionDate property.

Returns: the AcquisitionDate property.

References acquisitionDate.

const ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp > ome::xml::model::Image::getAcquisitionDate ( ) const

Get the AcquisitionDate property.

Returns: the AcquisitionDate property.

References acquisitionDate.

ome::compat::shared_ptr< std::string > ome::xml::model::Image::getDescription ( )

Get the Description property.

Returns: the Description property.

References description.

const ome::compat::shared_ptr< std::string > ome::xml::model::Image::getDescription ( ) const

Get the Description property.

Returns: the Description property.

References description.

const std::string & ome::xml::model::Image::getID ( ) const

Get the ID property.

Returns: the ID property.

References id.

Referenced by update().

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ome::compat::shared_ptr< ome::xml::model::ImagingEnvironment > ome::xml::model::Image::getImagingEnvironment ( )

Get the ImagingEnvironment property.

Returns: the ImagingEnvironment property.

References imagingEnvironment.

const ome::compat::shared_ptr< ome::xml::model::ImagingEnvironment > ome::xml::model::Image::getImagingEnvironment ( ) const

Get the ImagingEnvironment property.

Returns: the ImagingEnvironment property.

References imagingEnvironment.

const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Image::getLinkedAnnotation ( OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Annotation.

Parameters

index the index number of the Annotation.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References annotationLinks.

OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type ome::xml::model::Image::getLinkedAnnotationList ( ) const

Get the linked Annotation list.

Returns: a reference to the list.

References annotationLinks.

const ome::compat::weak_ptr< ome::xml::model::Dataset > & ome::xml::model::Image::getLinkedDataset ( OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type index ) const

Get linked Dataset.

Parameters

index the index number of the Dataset.

Returns: a weak pointer to the Dataset.

Exceptions

std::out_of_range if the index is invalid.

References datasetLinks.

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type ome::xml::model::Image::getLinkedDatasetList ( ) const

Get the linked Dataset list.

Returns: a reference to the list.

References datasetLinks.

ome::compat::weak_ptr< ome::xml::model::Experiment > ome::xml::model::Image::getLinkedExperiment ( )

Get linked Experiment.

Returns: the linked Experiment. The pointer may be null.

References experiment.

const ome::compat::weak_ptr< ome::xml::model::Experiment > ome::xml::model::Image::getLinkedExperiment ( ) const

Get linked Experiment.

Returns: the linked Experiment. The pointer may be null.

References experiment.

ome::compat::weak_ptr< ome::xml::model::Experimenter > ome::xml::model::Image::getLinkedExperimenter ( )

Get linked Experimenter.

Returns: the linked Experimenter. The pointer may be null.

References experimenter.

const ome::compat::weak_ptr< ome::xml::model::Experimenter > ome::xml::model::Image::getLinkedExperimenter ( ) const

Get linked Experimenter.

Returns: the linked Experimenter. The pointer may be null.

References experimenter.

ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > ome::xml::model::Image::getLinkedExperimenterGroup ( )

Get linked ExperimenterGroup.

Returns: the linked ExperimenterGroup. The pointer may be null.

References experimenterGroup.

const ome::compat::weak_ptr< ome::xml::model::ExperimenterGroup > ome::xml::model::Image::getLinkedExperimenterGroup ( ) const

Get linked ExperimenterGroup.

Returns: the linked ExperimenterGroup. The pointer may be null.

References experimenterGroup.

ome::compat::weak_ptr< ome::xml::model::Instrument > ome::xml::model::Image::getLinkedInstrument ( )

Get linked Instrument.

Returns: the linked Instrument. The pointer may be null.

References instrument.

const ome::compat::weak_ptr< ome::xml::model::Instrument > ome::xml::model::Image::getLinkedInstrument ( ) const

Get linked Instrument.

Returns: the linked Instrument. The pointer may be null.

References instrument.

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > & ome::xml::model::Image::getLinkedMicrobeamManipulation ( OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type index ) const

Get linked MicrobeamManipulation.

Parameters

index the index number of the MicrobeamManipulation.

Returns: a weak pointer to the MicrobeamManipulation.

Exceptions

std::out_of_range if the index is invalid.

References microbeamManipulationLinks.

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type ome::xml::model::Image::getLinkedMicrobeamManipulationList ( ) const

Get the linked MicrobeamManipulation list.

Returns: a reference to the list.

References microbeamManipulationLinks.

const ome::compat::weak_ptr< ome::xml::model::ROI > & ome::xml::model::Image::getLinkedROI ( OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type index ) const

Get linked ROI.

Parameters

index the index number of the ROI.

Returns: a weak pointer to the ROI.

Exceptions

std::out_of_range if the index is invalid.

References roiLinks.

OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type ome::xml::model::Image::getLinkedROIList ( ) const

Get the linked ROI list.

Returns: a reference to the list.

References roiLinks.

const ome::compat::weak_ptr< ome::xml::model::WellSample > & ome::xml::model::Image::getLinkedWellSample ( OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type::size_type index ) const

Get linked WellSample.

Parameters

index the index number of the WellSample.

Returns: a weak pointer to the WellSample.

Exceptions

std::out_of_range if the index is invalid.

References wellSamples.

OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type ome::xml::model::Image::getLinkedWellSampleList ( ) const

Get the linked WellSample list.

Returns: a reference to the list.

References wellSamples.

ome::compat::shared_ptr< std::string > ome::xml::model::Image::getName ( )

Get the Name property.

Returns: the Name property.

References name.

const ome::compat::shared_ptr< std::string > ome::xml::model::Image::getName ( ) const

Get the Name property.

Returns: the Name property.

References name.

ome::compat::shared_ptr< ome::xml::model::ObjectiveSettings > ome::xml::model::Image::getObjectiveSettings ( )

Get the ObjectiveSettings property.

Returns: the ObjectiveSettings property.

References objectiveSettings.

const ome::compat::shared_ptr< ome::xml::model::ObjectiveSettings > ome::xml::model::Image::getObjectiveSettings ( ) const

Get the ObjectiveSettings property.

Returns: the ObjectiveSettings property.

References objectiveSettings.

ome::compat::shared_ptr< ome::xml::model::Pixels > ome::xml::model::Image::getPixels ( )

Get the Pixels property.

Returns: the Pixels property.

References pixels.

const ome::compat::shared_ptr< ome::xml::model::Pixels > ome::xml::model::Image::getPixels ( ) const

Get the Pixels property.

Returns: the Pixels property.

References pixels.

ome::compat::shared_ptr< ome::xml::model::StageLabel > ome::xml::model::Image::getStageLabel ( )

Get the StageLabel property.

Returns: the StageLabel property.

References stageLabel.

const ome::compat::shared_ptr< ome::xml::model::StageLabel > ome::xml::model::Image::getStageLabel ( ) const

Get the StageLabel property.

Returns: the StageLabel property.

References stageLabel.

const std::string & ome::xml::model::Image::getXMLNamespace ( ) const

virtual

Get the XML namespace for this model object.

Returns: the XML namespace.

Implements ome::xml::model::OMEModelObject.

bool ome::xml::model::Image::link	(	ome::compat::shared_ptr< Reference > &	reference,
		ome::compat::shared_ptr< ome::xml::model::OMEModelObject > &	object
	)

Link a given OME model object to this model object.

Parameters

reference	type qualifier for the reference. This should be the corresponding reference type for object. If, for example, object is of type Image, reference must be of type ImageRef.
object	Model object to link to.

Returns: true if this model object was able to handle the reference, otherwise false.

Todo:: the use of reference to provide type information for the type of object is unconventional and quite possibly unnecessary–a simple string or type_info would suffice for what it's being used for, if it's needed at all. Is this true for all cases? The implementation also needs to do strict checking of the object type; it's not currently failing if it's of the wrong type. This applies to all generated model objects implementing this interface.

Todo:: This bit is silly; why do we have two dynamic_casts here.

Todo:: This bit is silly; why do we have two dynamic_casts here.

Todo:: This bit is silly; why do we have two dynamic_casts here.

Todo:: This bit is silly; why do we have two dynamic_casts here.

Todo:: This bit is silly; why do we have two dynamic_casts here.

Todo:: This bit is silly; why do we have two dynamic_casts here.

Todo:: This bit is silly; why do we have two dynamic_casts here.

bool ome::xml::model::Image::linkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Link Annotation.

Parameters

annotation the Annotation to link.

Returns: true if the object was added to the internal annotationLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References annotationLinks.

bool ome::xml::model::Image::linkDataset ( const ome::compat::shared_ptr< ome::xml::model::Dataset > & dataset_BackReference )

Link Dataset.

Parameters

dataset_BackReference the Dataset to link.

Returns: true if the object was added to the internal datasetLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References datasetLinks.

Referenced by ome::xml::model::Dataset::link().

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void ome::xml::model::Image::linkExperiment ( ome::compat::shared_ptr< ome::xml::model::Experiment > & experiment )

Link Experiment.

Parameters

experiment the Experiment to link.

References experiment.

void ome::xml::model::Image::linkExperimenter ( ome::compat::shared_ptr< ome::xml::model::Experimenter > & experimenter )

Link Experimenter.

Parameters

experimenter the Experimenter to link.

References experimenter.

void ome::xml::model::Image::linkExperimenterGroup ( ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > & experimenterGroup )

Link ExperimenterGroup.

Parameters

experimenterGroup the ExperimenterGroup to link.

References experimenterGroup.

void ome::xml::model::Image::linkInstrument ( ome::compat::shared_ptr< ome::xml::model::Instrument > & instrument )

Link Instrument.

Parameters

instrument the Instrument to link.

References instrument.

bool ome::xml::model::Image::linkMicrobeamManipulation ( const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > & microbeamManipulation )

Link MicrobeamManipulation.

Parameters

microbeamManipulation the MicrobeamManipulation to link.

Returns: true if the object was added to the internal microbeamManipulationLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References microbeamManipulationLinks.

bool ome::xml::model::Image::linkROI ( const ome::compat::shared_ptr< ome::xml::model::ROI > & roi )

Link ROI.

Parameters

roi	the ROI to link.

Returns: true if the object was added to the internal roiLinks list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References roiLinks.

bool ome::xml::model::Image::linkWellSample ( const ome::compat::shared_ptr< ome::xml::model::WellSample > & wellSample_BackReference )

Link WellSample.

Parameters

wellSample_BackReference the WellSample to link.

Returns: true if the object was added to the internal wellSamples list, otherwise false.

Todo:: Why have a return value here; what is it used for? Is this an artifact of the Java API?

References wellSamples.

Referenced by ome::xml::model::WellSample::link().

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void ome::xml::model::Image::setAcquisitionDate ( ome::compat::shared_ptr< ome::xml::model::primitives::Timestamp > & acquisitionDate )

Set the AcquisitionDate property.

Parameters

acquisitionDate the value to set.

References acquisitionDate.

Referenced by update().

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void ome::xml::model::Image::setDescription ( ome::compat::shared_ptr< std::string > & description )

Set the Description property.

Parameters

description the value to set.

References description.

Referenced by update().

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void ome::xml::model::Image::setID ( const std::string & id )

Set the ID property.

Parameters

id	the value to set.

References id.

Referenced by update().

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void ome::xml::model::Image::setImagingEnvironment ( ome::compat::shared_ptr< ome::xml::model::ImagingEnvironment > & imagingEnvironment )

Set the ImagingEnvironment property.

Parameters

imagingEnvironment the value to set.

References imagingEnvironment.

Referenced by update().

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const ome::compat::weak_ptr< ome::xml::model::Annotation > & ome::xml::model::Image::setLinkedAnnotation	(	OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Annotation > &	annotation
	)

Set linked Annotation.

Note: The index must be valid.

Parameters

index	the index number of the Annotation.
annotation	the Annotation to set.

Returns: a weak pointer to the Annotation.

Exceptions

std::out_of_range if the index is invalid.

References annotationLinks.

const ome::compat::weak_ptr< ome::xml::model::Dataset > & ome::xml::model::Image::setLinkedDataset	(	OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::Dataset > &	dataset_BackReference
	)

Set linked Dataset.

Note: The index must be valid.

Parameters

index	the index number of the Dataset.
dataset_BackReference	the Dataset to set.

Returns: a weak pointer to the Dataset.

Exceptions

std::out_of_range if the index is invalid.

References datasetLinks.

const ome::compat::weak_ptr< ome::xml::model::MicrobeamManipulation > & ome::xml::model::Image::setLinkedMicrobeamManipulation	(	OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > &	microbeamManipulation
	)

Set linked MicrobeamManipulation.

Note: The index must be valid.

Parameters

index	the index number of the MicrobeamManipulation.
microbeamManipulation	the MicrobeamManipulation to set.

Returns: a weak pointer to the MicrobeamManipulation.

Exceptions

std::out_of_range if the index is invalid.

References microbeamManipulationLinks.

const ome::compat::weak_ptr< ome::xml::model::ROI > & ome::xml::model::Image::setLinkedROI	(	OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::ROI > &	roi
	)

Set linked ROI.

Note: The index must be valid.

Parameters

index	the index number of the ROI.
roi	the ROI to set.

Returns: a weak pointer to the ROI.

Exceptions

std::out_of_range if the index is invalid.

References roiLinks.

const ome::compat::weak_ptr< ome::xml::model::WellSample > & ome::xml::model::Image::setLinkedWellSample	(	OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type::size_type	index,
		const ome::compat::shared_ptr< ome::xml::model::WellSample > &	wellSample_BackReference
	)

Set linked WellSample.

Note: The index must be valid.

Parameters

index	the index number of the WellSample.
wellSample_BackReference	the WellSample to set.

Returns: a weak pointer to the WellSample.

Exceptions

std::out_of_range if the index is invalid.

References wellSamples.

void ome::xml::model::Image::setName ( ome::compat::shared_ptr< std::string > & name )

Set the Name property.

Parameters

name	the value to set.

References name.

Referenced by update().

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void ome::xml::model::Image::setObjectiveSettings ( ome::compat::shared_ptr< ome::xml::model::ObjectiveSettings > & objectiveSettings )

Set the ObjectiveSettings property.

Parameters

objectiveSettings the value to set.

References objectiveSettings.

Referenced by update().

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void ome::xml::model::Image::setPixels ( ome::compat::shared_ptr< ome::xml::model::Pixels > & pixels )

Set the Pixels property.

Parameters

pixels the value to set.

References pixels.

Referenced by update().

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void ome::xml::model::Image::setStageLabel ( ome::compat::shared_ptr< ome::xml::model::StageLabel > & stageLabel )

Set the StageLabel property.

Parameters

stageLabel the value to set.

References stageLabel.

Referenced by update().

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OMEModelObject::indexed_container< ome::xml::model::Annotation, ome::compat::weak_ptr >::type::size_type ome::xml::model::Image::sizeOfLinkedAnnotationList ( ) const

Get size of linked Annotation list.

Returns: the size of the list.

References annotationLinks.

OMEModelObject::indexed_container< ome::xml::model::Dataset, ome::compat::weak_ptr >::type::size_type ome::xml::model::Image::sizeOfLinkedDatasetList ( ) const

Get size of linked Dataset list.

Returns: the size of the list.

References datasetLinks.

OMEModelObject::indexed_container< ome::xml::model::MicrobeamManipulation, ome::compat::weak_ptr >::type::size_type ome::xml::model::Image::sizeOfLinkedMicrobeamManipulationList ( ) const

Get size of linked MicrobeamManipulation list.

Returns: the size of the list.

References microbeamManipulationLinks.

OMEModelObject::indexed_container< ome::xml::model::ROI, ome::compat::weak_ptr >::type::size_type ome::xml::model::Image::sizeOfLinkedROIList ( ) const

Get size of linked ROI list.

Returns: the size of the list.

References roiLinks.

OMEModelObject::indexed_container< ome::xml::model::WellSample, ome::compat::weak_ptr >::type::size_type ome::xml::model::Image::sizeOfLinkedWellSampleList ( ) const

Get size of linked WellSample list.

Returns: the size of the list.

References wellSamples.

bool ome::xml::model::Image::unlinkAnnotation ( const ome::compat::shared_ptr< ome::xml::model::Annotation > & annotation )

Unlink Annotation.

Parameters

annotation the Annotation to unlink.

Returns: true if the Annotation was unlinked, otherwise false if the Annotation was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References annotationLinks.

bool ome::xml::model::Image::unlinkDataset ( const ome::compat::shared_ptr< ome::xml::model::Dataset > & dataset_BackReference )

Unlink Dataset.

Parameters

dataset_BackReference the Dataset to unlink.

Returns: true if the Dataset was unlinked, otherwise false if the Dataset was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References datasetLinks.

void ome::xml::model::Image::unlinkExperiment ( ome::compat::shared_ptr< ome::xml::model::Experiment > & experiment )

Unlink Experiment.

Parameters

experiment the Experiment to unlink.

Todo:: This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

void ome::xml::model::Image::unlinkExperimenter ( ome::compat::shared_ptr< ome::xml::model::Experimenter > & experimenter )

Unlink Experimenter.

Parameters

experimenter the Experimenter to unlink.

Todo:: This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

void ome::xml::model::Image::unlinkExperimenterGroup ( ome::compat::shared_ptr< ome::xml::model::ExperimenterGroup > & experimenterGroup )

Unlink ExperimenterGroup.

Parameters

experimenterGroup the ExperimenterGroup to unlink.

Todo:: This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

void ome::xml::model::Image::unlinkInstrument ( ome::compat::shared_ptr< ome::xml::model::Instrument > & instrument )

Unlink Instrument.

Parameters

instrument the Instrument to unlink.

Todo:: This method is fairly pointless since it's equivalent to linking a null pointer. It could call link(0) internally.

bool ome::xml::model::Image::unlinkMicrobeamManipulation ( const ome::compat::shared_ptr< ome::xml::model::MicrobeamManipulation > & microbeamManipulation )

Unlink MicrobeamManipulation.

Parameters

microbeamManipulation the MicrobeamManipulation to unlink.

Returns: true if the MicrobeamManipulation was unlinked, otherwise false if the MicrobeamManipulation was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References microbeamManipulationLinks.

bool ome::xml::model::Image::unlinkROI ( const ome::compat::shared_ptr< ome::xml::model::ROI > & roi )

Unlink ROI.

Parameters

roi	the ROI to unlink.

Returns: true if the ROI was unlinked, otherwise false if the ROI was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References roiLinks.

bool ome::xml::model::Image::unlinkWellSample ( const ome::compat::shared_ptr< ome::xml::model::WellSample > & wellSample_BackReference )

Unlink WellSample.

Parameters

wellSample_BackReference the WellSample to unlink.

Returns: true if the WellSample was unlinked, otherwise false if the WellSample was not linked and could hence not be unlinked.

Todo:

Does the return value serve any useful purpose? Is this also inherited Java API?

Doesn't the removal break the indexing?

Does the removal deal with multiple instances; we aren't preventing duplicates on insertion.

References wellSamples.

void ome::xml::model::Image::update	(	const common::xml::dom::Element &	element,
		ome::xml::model::OMEModel &	model
	)

virtual

Update the object hierarchy recursively from an XML DOM tree.

Note: No properties are removed, only added or updated.

Parameters

element	root of the XML DOM tree to from which to construct the model object graph.
model	handler for the OME model used to track instances and references seen during the update.

Exceptions

EnumerationException if there is an error instantiating an enumeration during model object creation, or ModelException if there are any consistency or validity errors found during processing.

Implements ome::xml::model::OMEModelObject.

References ome::xml::model::OMEModel::addModelObject(), ome::xml::model::OMEModel::addReference(), ome::xml::model::StageLabel::create(), ome::xml::model::ImagingEnvironment::create(), ome::xml::model::ObjectiveSettings::create(), ome::xml::model::Pixels::create(), ome::common::xml::dom::Element::getAttribute(), ome::xml::model::detail::OMEModelObject::getChildrenByTagName(), getID(), ome::common::xml::dom::Element::getTagName(), ome::common::xml::dom::Element::hasAttribute(), ome::xml::model::detail::OMEModelObject::logger, setAcquisitionDate(), setDescription(), setID(), setImagingEnvironment(), setName(), setObjectiveSettings(), setPixels(), setStageLabel(), ome::xml::model::detail::OMEModelObject::stripNamespacePrefix(), ome::xml::model::detail::OMEModelObject::update(), and validElementName().