Uses of Class
omero.gateway.model.DataObject

Packages that use DataObject

Package	Description
omero.gateway.facility
omero.gateway.model
omero.gateway.util

Uses of DataObject in omero.gateway.facility

Methods in omero.gateway.facility with type parameters of type DataObject

Modifier and Type	Method and Description
<T extends DataObject> T	BrowseFacility.findObject(SecurityContext ctx, Class<T> klass, long id) Retrieves an updated version of the specified object.
<T extends DataObject> T	BrowseFacility.findObject(SecurityContext ctx, Class<T> klass, long id, boolean allGroups) Retrieves an updated version of the specified object.

Methods in omero.gateway.facility that return DataObject

Modifier and Type	Method and Description
DataObject	BrowseFacility.findObject(SecurityContext ctx, String pojoName, long id) Retrieves an updated version of the specified object.
DataObject	BrowseFacility.findObject(SecurityContext ctx, String pojoName, long id, boolean allGroups) Retrieves an updated version of the specified object.
DataObject	DataManagerFacility.saveAndReturnObject(SecurityContext ctx, DataObject object) Updates the specified object.
DataObject	DataManagerFacility.saveAndReturnObject(SecurityContext ctx, DataObject object, String userName) Updates the specified object.

Methods in omero.gateway.facility that return types with arguments of type DataObject

Modifier and Type	Method and Description
Map<DataObject,List<AnnotationData>>	MetadataFacility.getAnnotations(SecurityContext ctx, List<? extends DataObject> objects, List<Class<? extends AnnotationData>> annotationTypes, List<Long> userIds) Get the annotations for the given DataObjects
Collection<DataObject>	BrowseFacility.getHierarchy(SecurityContext ctx, Class rootType, List<Long> rootIDs, omero.sys.Parameters options) Retrieves hierarchy trees rooted by a given node.
Collection<DataObject>	BrowseFacility.getHierarchy(SecurityContext ctx, Class rootType, long userId) Retrieves hierarchy trees rooted by a given node.
Set<DataObject>	BrowseFacility.loadHierarchy(SecurityContext ctx, Class rootType, List<Long> rootIDs, omero.sys.Parameters options) Deprecated. Please use the more generic method BrowseFacility.getHierarchy(SecurityContext, Class, long)
Set<DataObject>	BrowseFacility.loadHierarchy(SecurityContext ctx, Class rootType, long userId) Deprecated. Please use the more generic method BrowseFacility.getHierarchy(SecurityContext, Class, List, Parameters)

Methods in omero.gateway.facility with parameters of type DataObject

Modifier and Type	Method and Description
TableData	TablesFacility.addTable(SecurityContext ctx, DataObject target, String name, TableData data) Adds a new table with the provided data
<T extends AnnotationData> T	DataManagerFacility.attachAnnotation(SecurityContext ctx, T annotation, DataObject target) Create/attach an AnnotationData to a given DataObject
Future<FileAnnotationData>	DataManagerFacility.attachFile(SecurityContext ctx, File file, String mimetype, String description, String namespace, DataObject target) Attaches a File to a DataObject
List<AnnotationData>	MetadataFacility.getAnnotations(SecurityContext ctx, DataObject object) Get all annotations for the given DataObject
List<AnnotationData>	MetadataFacility.getAnnotations(SecurityContext ctx, DataObject object, List<Class<? extends AnnotationData>> annotationTypes, List<Long> userIds) Get the annotations for the given DataObject
Collection<FileAnnotationData>	TablesFacility.getAvailableTables(SecurityContext ctx, DataObject parent) Get all available tables for a the specified object
DataObject	DataManagerFacility.saveAndReturnObject(SecurityContext ctx, DataObject object) Updates the specified object.
DataObject	DataManagerFacility.saveAndReturnObject(SecurityContext ctx, DataObject object, String userName) Updates the specified object.

Method parameters in omero.gateway.facility with type arguments of type DataObject

Modifier and Type	Method and Description
Map<DataObject,List<AnnotationData>>	MetadataFacility.getAnnotations(SecurityContext ctx, List<? extends DataObject> objects, List<Class<? extends AnnotationData>> annotationTypes, List<Long> userIds) Get the annotations for the given DataObjects

Uses of DataObject in omero.gateway.model

Subclasses of DataObject in omero.gateway.model

Modifier and Type	Class and Description
class	AnnotationData Holds a textual annotation of a given data object and a reference to the Experimenter that wrote it.
class	BooleanAnnotationData Boolean annotation.
class	ChannelAcquisitionData Object hosting the acquisition related to a logical channel.
class	ChannelData The data that makes up an OME Channel along with links to its logical channel.
class	DatasetData The data that makes up an OME Dataset along with links to its contained Images and enclosing Project as well as the Experimenter that owns this Dataset.
class	DetectorData Hosts a detector.
class	DichroicData Hosts the dichroic.
class	DoubleAnnotationData Wraps a double annotation.
class	EllipseData Represents an ellipse in the Euclidean space R2.
class	ExperimenterData The data that makes up an OME Experimenter along with information about the Group the Experimenter belongs in.
class	FileAnnotationData Annotation to upload files to the server.
class	FileData DataObject used to handle the file visible via FS.
class	FilesetData Wraps a file set object.
class	FilterData Object hosting a filter.
class	FilterSetData Object hosting a filterSet.
class	FolderData Pojo wrapper for an OME Folder.
class	GroupData The data that makes up an OME Group along with the various members of the Group
class	ImageAcquisitionData Object hosting the acquisition metadata.
class	ImageData The data that makes up an OME Image along with links to its Pixels, enclosing Datasets, and the Experimenter that owns this Image.
class	InstrumentData Hosts the instrument used to capture an image.
class	LightPathData Object hosting a light path.
class	LightSourceData Object hosting a light source: filament, arc, laser or light emitting diode
class	LineData Represents a line in the Euclidean space R2.
class	LongAnnotationData Wraps a long annotation.
class	MapAnnotationData
class	MaskData Represents an Mask in the Euclidean space R2.
class	ObjectiveData Hosts an objective used to capture an image.
class	OTFData Hosts an OTF.
class	PixelsData The data that makes up an OME Pixels object along with a back pointer to the Image that owns this Pixels.
class	PlateAcquisitionData The data that makes up an OME PlateAcquisition.
class	PlateData The data that makes up an OME Plate along with links to its contained Well and enclosing Screen as well as the Experimenter that owns this Plate.
class	PointData Represents a point in the Euclidean space R2.
class	PolygonData Represents an Polygon shape in the Euclidean space R2.
class	PolylineData Represents an Polyline shape in the Euclidean space R2.
class	ProjectData The data that makes up an OME Project along with links to its contained Datasets and the Experimenter that owns this Project.
class	RatingAnnotationData Annotation used to rate an object.
class	RectangleData Represents a rectangle in the Euclidean space R2.
class	ROIData Converts the ROI object.
class	ScreenData The data that makes up an OME Screen along with links to its contained Plates and the Experimenter that owns this Screen.
class	ShapeData Hosts a shape.
class	ShapeSettingsData Stores the settings related to a given shape.
class	TagAnnotationData A tag annotation can either be related to an image or a tag but not to both at the same time.
class	TermAnnotationData Defines a Term Annotation.
class	TextData Represents a Text in the Euclidean space R2.
class	TextualAnnotationData Basic textual annotation used to add comments to a given object.
class	TimeAnnotationData Basic time annotation.
class	WellData The data that makes up an OME Well and the Experimenter that owns this Well.
class	WellSampleData The data that makes up an OME WellSample along with links to its images and the Experimenter that owns this WellSample.
class	XMLAnnotationData Defines an XML Annotation.

Fields in omero.gateway.model with type parameters of type DataObject

Modifier and Type	Field and Description
static List<Class<? extends DataObject>>	SearchParameters.ALL_TYPES

Methods in omero.gateway.model that return DataObject

Modifier and Type	Method and Description
static DataObject	DataObject.asPojo(omero.model.IObject obj) Converts the passed IObject into its corresponding Pojo object.
DataObject	SearchResult.getObject() Get the found object

Methods in omero.gateway.model that return types with arguments of type DataObject

Modifier and Type	Method and Description
Set<DataObject>	TagAnnotationData.getDataObjects() Returns the collection of data objects related to this tag.
List<DataObject>	SearchResultCollection.getDataObjects(int scopeId, Class<? extends DataObject> type) Get DataObjects filtered by scope and type
Class<? extends DataObject>	SearchResult.getType() Get the type (class) of objects to search for see DataObject
List<Class<? extends DataObject>>	SearchParameters.getTypes() Returns the types to search on.

Methods in omero.gateway.model with parameters of type DataObject

Modifier and Type	Method and Description
void	SearchResult.setObject(DataObject object) Set the found object

Method parameters in omero.gateway.model with type arguments of type DataObject

Modifier and Type	Method and Description
Map<Long,List<SearchResult>>	SearchResultCollection.getByGroup(Class<? extends DataObject> type) Get a perGroup map representation of the results, filtered by type
List<DataObject>	SearchResultCollection.getDataObjects(int scopeId, Class<? extends DataObject> type) Get DataObjects filtered by scope and type
List<SearchResult>	SearchResultCollection.getResults(int scopeId, Class<? extends DataObject> type) Get all results of a certain scope and/or type
void	TagAnnotationData.setDataObjects(Set<DataObject> dataObjects) Sets the collection of data objects related to that tag.
void	SearchResult.setType(Class<? extends DataObject> type) Set the type (class) of objects to search for see DataObject

Constructor parameters in omero.gateway.model with type arguments of type DataObject

Constructor and Description
SearchParameters(Set<SearchScope> scope, List<Class<? extends DataObject>> types, String query) Creates a new instance.
SearchResult(int scopeId, Class<? extends DataObject> type, long objectId, long groupId) Create a new instance

Uses of DataObject in omero.gateway.util

Methods in omero.gateway.util with type parameters of type DataObject

Modifier and Type	Method and Description
static <T extends DataObject> Collection<T>	PojoMapper.asCastedDataObjects(List objects) Converts each element of the collection into its corresponding DataObject.
static <K,V extends DataObject> Map<K,V>	PojoMapper.asDataObjectMap(Class<K> keyKlass, Class<V> valueKlass, String method, List objects) Converts each element of the list to a pair (key, value) in the map.
static <T extends DataObject> Collection<T>	PojoMapper.convertToDataObjects(Collection objects) Converts each element of the collection into its corresponding DataObject.
static <T extends DataObject> Collection<T>	Pojos.relativeComplement(Collection<T> coll1, Collection<T> coll2) Get the relative complement of coll1 in coll2

Methods in omero.gateway.util that return DataObject

Modifier and Type	Method and Description
static DataObject	PojoMapper.asDataObject(omero.model.IObject object) Converts the specified IObject into its corresponding DataObject.

Methods in omero.gateway.util that return types with arguments of type DataObject

Modifier and Type	Method and Description
static Class<? extends DataObject>	PojoMapper.getPojoType(Class<? extends omero.model.IObject> modelType) Get the pojo type for a an IObject class (Reverse of PojoMapper.getModelType(Class))

Methods in omero.gateway.util with parameters of type DataObject

Modifier and Type	Method and Description
static omero.model.IObject	ModelMapper.createIObject(DataObject child) Converts the specified DataObject into its corresponding IObject.
static omero.model.IObject	ModelMapper.createIObject(DataObject child, DataObject parent) Converts the specified DataObject into its corresponding IObject.

Method parameters in omero.gateway.util with type arguments of type DataObject

Modifier and Type	Method and Description
static Collection<Long>	Pojos.extractIds(Collection<? extends DataObject> pojos) Extract the (distinct) ids from a collection of DataObjects
static String	PojoMapper.getGraphType(Class<? extends DataObject> dataType) Returns the name of the data type which has to used for Graph actions, see Requests
static Class<? extends omero.model.IObject>	PojoMapper.getModelType(Class<? extends DataObject> pojoType) Converts the specified POJO into the corresponding model class.