Package omero :: Package gateway :: Class _PlateWrapper

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Class _PlateWrapper

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omero_model_PlateI class wrapper extends BlitzObjectWrapper.

Instance Methods

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__bstrap__(self)
Initialisation method which is implemented by subclasses to set their class variables etc.

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__prepare__(self)
Initialisation method which is implemented by subclasses to handle various init tasks

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__reset__(self)
Clears child cache, so next _listChildren will query the server

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_loadPlateAcquisitions(self)

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countPlateAcquisitions(self)

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listPlateAcquisitions(self)

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getNumberOfFields(self, pid=None)
Returns tuple of min and max of indexed collection of well samples per plate acquisition if exists

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_listChildren(self, **kwargs)
Lists Wells in this plate, not sorted.

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countChildren(self)
Counts available number of child objects.

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setGridSizeConstraints(self, row, col)
Makes sure the grid side count is the exact power of two of row and col arguments, keeping their ratio, that fits the existing well count.

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getGridSize(self)
Iterates all wells on plate to retrieve grid size as {'rows': rSize, 'columns':cSize} dict.

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getWellGrid(self, index=0)
Returns a grid of WellWrapper objects, indexed by [row][col].

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getColumnLabels(self)
Returns a list of labels for the columns on this plate.

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getRowLabels(self)
Returns a list of labels for the rows on this plate.

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exportOmeTiff(self)
Make sure full project export doesn't pick up wellsample images TODO: do we want to support this at all?

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_getQueryString(self)
Returns a query string for constructing custom queries, loading the screen for each plate.

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Inherited from BlitzObjectWrapper: __eq__, __getattr__, __init__, __loadedHotSwap__, __repr__, canAnnotate, canChgrp, canDelete, canEdit, canLink, canOwnerWrite, canWrite, countChildren_cached, creationEventDate, findChildByName, getAncestry, getAnnotation, getChildLinks, getDate, getDescription, getDetails, getId, getName, getOwner, getOwnerFullName, getOwnerOmeName, getParent, getParentLinks, isLeaded, isOwned, isPrivate, isPublic, isShared, linkAnnotation, listAnnotations, listChildren, listOrphanedAnnotations, listParents, removeAnnotations, save, saveAs, setDescription, setName, simpleMarshal, unlinkAnnotations, updateEventDate

Inherited from BlitzObjectWrapper (private): _getAnnotationLinks, _getChildWrapper, _getParentWrappers, _linkAnnotation, _linkObject, _loadAnnotationLinks, _moveLink

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

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Inherited from BlitzObjectWrapper: LINK_PARENT

Class Variables

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Inherited from BlitzObjectWrapper: CHILD_WRAPPER_CLASS, LINK_CHILD, LINK_CLASS, OMERO_CLASS, PARENT_WRAPPER_CLASS

Properties

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Inherited from object: __class__

Method Details

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bstrap(self)

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Initialisation method which is implemented by subclasses to set their class variables etc.

Overrides: BlitzObjectWrapper.__bstrap__: (inherited documentation)

prepare(self)

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Initialisation method which is implemented by subclasses to handle various init tasks

Overrides: BlitzObjectWrapper.__prepare__: (inherited documentation)

getNumberOfFields(self, pid=None)

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Returns tuple of min and max of indexed collection of well samples per plate acquisition if exists

Decorators:

@timeit

_listChildren(self, **kwargs)

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        Lists Wells in this plate, not sorted. Saves wells to _childcache map, where key is (row, column).
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        :rtype: list of omero.model.WellI objects
        :return: child objects.

Overrides: BlitzObjectWrapper._listChildren

countChildren(self)

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Counts available number of child objects.

:return: The number of child objects available :rtype: Long

Overrides: BlitzObjectWrapper.countChildren: (inherited documentation)

getGridSize(self)

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Iterates all wells on plate to retrieve grid size as {'rows': rSize, 'columns':cSize} dict.

:rtype: dict of {'rows': rSize, 'columns':cSize}

getWellGrid(self, index=0)

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Returns a grid of WellWrapper objects, indexed by [row][col].

:rtype: 2D array of WellWrappers. Empty well positions are None

getColumnLabels(self)

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Returns a list of labels for the columns on this plate. E.g. [1, 2, 3...] or ['A', 'B', 'C'...] etc

getRowLabels(self)

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Returns a list of labels for the rows on this plate. E.g. [1, 2, 3...] or ['A', 'B', 'C'...] etc

_getQueryString(self)

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Returns a query string for constructing custom queries, loading the screen for each plate.

Overrides: BlitzObjectWrapper._getQueryString