| Interface | Description |
|---|---|
| AmiraReader.PlaneReader |
This is the common interface for all formats, compressed or not.
|
| MetadataOptions |
Holds metadata-related options.
|
| PrairieMetadata.Value |
A value in a Prairie metadata dictionary.
|
| Class | Description |
|---|---|
| AFIReader |
AFIReader is the file format reader for Aperio AFI files.
|
| AIMReader |
AIMReader is the file format reader for .aim files.
|
| AliconaReader |
AliconaReader is the file format reader for Alicona AL3D files.
|
| AmiraReader |
This is a file format reader for AmiraMesh data.
|
| AnalyzeReader |
AnalyzeReader is the file format reader for Analyze 7.5 files.
|
| APLReader |
APLReader is the file format reader for Olympus APL files.
|
| APNGReader |
APNGReader is the file format reader for
Animated Portable Network Graphics (APNG) images.
|
| ARFReader |
ARFReader is the file format reader for Axon Raw Format (ARF) files,
produced by INDEC BioSystems's
Imaging Workbench
software.
|
| AVIReader |
AVIReader is the file format reader for AVI files.
|
| BaseTiffReader |
BaseTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
|
| BaseZeissReader |
BaseZeissReader contains common functionality required by
readers for Zeiss AxioVision formats.
|
| BDReader |
BDReader is the file format reader for BD Pathway datasets.
|
| BIFormatReader |
BIFormatReader is the superclass for file format readers
that use java.awt.image.BufferedImage as the native data type.
|
| BioRadGelReader |
BioRadGelReader is the file format reader for Bio-Rad gel files.
|
| BioRadReader |
BioRadReader is the file format reader for Bio-Rad PIC files.
|
| BioRadSCNReader |
BioRadSCNReader is the reader for Bio-Rad .scn files
|
| BMPReader |
BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
|
| BrukerReader |
BrukerReader is the file format reader for Bruker MRI files.
|
| BurleighReader |
BurleighReader is the file format reader for Burleigh .img files.
|
| CanonRawReader |
CanonRawReader is the file format reader for Canon RAW files.
|
| CellH5Reader |
Reader for CellH5 (HDF) files.
|
| CellomicsReader |
Reader for Cellomics C01 files.
|
| CellSensReader |
CellSensReader is the file format reader for cellSens .vsi files.
|
| CellVoyagerReader |
A bioformat reader for the Yokagawa Cellvoyager CV1000 automated microscope (
http://www.yokogawa.com/scanner/products/cv1000e.htm).
|
| CellVoyagerReader.AreaInfo | |
| CellVoyagerReader.ChannelInfo | |
| CellVoyagerReader.FieldInfo | |
| CellVoyagerReader.WellInfo | |
| CellWorxReader |
CellWorxReader is the file format reader for CellWorx .pnl files.
|
| DefaultMetadataOptions |
Default implementation of
MetadataOptions. |
| DeltavisionReader |
DeltavisionReader is the file format reader for Deltavision files.
|
| DeltavisionReader.DVExtHdrFields |
This private class structure holds the details for the extended header.
|
| DicomReader |
DicomReader is the file format reader for DICOM files.
|
| DNGReader |
DNGReader is the file format reader for Canon DNG (TIFF) files.
|
| DynamicMetadataOptions |
Configuration object for readers and writers.
|
| Ecat7Reader |
Ecat7Reader is the file format reader for ECAT 7 files.
|
| EPSReader |
Reader is the file format reader for Encapsulated PostScript (EPS) files.
|
| FakeReader |
FakeReader is the file format reader for faking input data.
|
| FEIReader |
FEIReader is the file format reader for FEI and Philips .img files.
|
| FEITiffReader |
FEITiffReader is the file format reader for TIFF files produced by various
FEI software.
|
| FilePatternReader | |
| FitsReader |
FitsReader is the file format reader for
Flexible Image Transport System (FITS) images.
|
| FlexReader |
FlexReader is a file format reader for Evotec Flex files.
|
| FlowSightReader | |
| FluoviewReader |
FluoviewReader is the file format reader for
Olympus Fluoview TIFF files AND Andor Bio-imaging Division (ABD) TIFF files.
|
| FujiReader |
FujiReader is the file format reader for Fuji LAS 3000 datasets.
|
| FV1000Reader |
FV1000Reader is the file format reader for Fluoview FV 1000 OIB and
Fluoview FV 1000 OIF files.
|
| GatanDM2Reader |
GatanDM2Reader is the file format reader for Gatan .dm2 files.
|
| GatanReader |
GatanReader is the file format reader for Gatan files.
|
| GelReader |
GelReader is the file format reader for
Molecular Dynamics GEL TIFF files.
|
| GIFReader |
GIFReader is the file format reader for Graphics Interchange Format
(GIF) files.
|
| HamamatsuVMSReader |
HamamatsuVMSReader is the file format reader for Hamamatsu VMS datasets.
|
| HISReader |
HISReader is the file format reader for Hamamatsu .his files.
|
| HitachiReader |
HitachiReader is the file format reader for S-4800 files.
|
| HRDGDFReader |
HRDGDFReader is the file format reader for the Gridded Data Format used
by NOAA's Hurricane Research Division.
|
| I2IReader |
I2IReader is the file format reader for I2I files.
|
| ICSReader |
ICSReader is the file format reader for ICS (Image Cytometry Standard)
files.
|
| IM3Reader | |
| IM3Reader.BooleanIM3Record |
A record containing boolean values
|
| IM3Reader.ContainerRecord | |
| IM3Reader.FloatIM3Record | |
| IM3Reader.IM3Record | |
| IM3Reader.IntIM3Record | |
| IM3Reader.Spectrum | |
| IM3Reader.StringIM3Record | |
| ImaconReader |
ImaconReader is the file format reader for Imacon .fff (TIFF) files.
|
| ImageIOReader |
ImageIOReader is the superclass for file format readers
that use the javax.imageio package.
|
| ImagicReader |
ImagicReader is the file format reader for IMAGIC files.
|
| ImarisHDFReader |
Reader for Bitplane Imaris 5.5 (HDF) files.
|
| ImarisReader |
ImarisReader is the file format reader for Bitplane Imaris files.
|
| ImarisTiffReader |
ImarisTiffReader is the file format reader for
Bitplane Imaris 3 files (TIFF variant).
|
| IMODReader |
Reader for IMOD binary files.
|
| ImprovisionTiffReader |
ImprovisionTiffReader is the file format reader for
Improvision TIFF files.
|
| ImspectorReader |
ImspectorReader is the file format reader for Imspector .msr files.
|
| InCell3000Reader |
InCell3000Reader is the file format reader for InCell 3000.
|
| InCellReader |
InCellReader is the file format reader for InCell 1000/2000 datasets.
|
| INRReader |
INRReader is the file format reader for INR files.
|
| InveonReader |
InveonReader is the file format reader for Inveon files.
|
| IPLabReader |
IPLabReader is the file format reader for IPLab (.IPL) files.
|
| IPWReader |
IPWReader is the file format reader for Image-Pro Workspace (IPW) files.
|
| IvisionReader |
IvisionReader is the file format reader for IVision (.IPM) files.
|
| JEOLReader |
JEOLReader is the file format reader for JEOL files.
|
| JPEG2000MetadataParser |
A parser for JPEG 2000 metadata.
|
| JPEG2000Reader |
JPEG2000Reader is the file format reader for JPEG-2000 images.
|
| JPEGReader |
JPEGReader is the file format reader for JPEG images.
|
| JPEGReader.DefaultJPEGReader | |
| JPKReader |
JPKReader is the file format reader for JPK Instruments files.
|
| JPXReader |
JPXReader is the file format reader for JPX (3D JPEG-2000) images.
|
| KhorosReader |
Reader for Khoros XV files.
|
| KodakReader |
KodakReader is the file format reader for Kodak Molecular Imaging .bip files.
|
| L2DReader |
L2DReader is the file format reader for Li-Cor L2D datasets.
|
| LegacyND2Reader |
LegacyND2Reader is a file format reader for Nikon ND2 files that uses
the Nikon ND2 SDK - it is only usable on Windows machines.
|
| LegacyQTReader |
LegacyQTReader is a file format reader for QuickTime movie files.
|
| LeicaHandler |
SAX handler for parsing XML in Leica LIF and Leica TCS files.
|
| LeicaReader |
LeicaReader is the file format reader for Leica files.
|
| LeicaSCNReader |
LeicaSCNReader is the file format reader for Leica SCN TIFF files.
|
| LEOReader |
LEOReader is the file format reader for LEO EM files.
|
| LiFlimReader |
LiFlimReader is the file format reader for LI-FLIM files.
|
| LIFReader |
LIFReader is the file format reader for Leica LIF files.
|
| LIMReader |
LIMReader is the file format reader for Laboratory Imaging/Nikon LIM files.
|
| MetamorphHandler |
MetamorphTiffReader is the file format reader for TIFF files produced by
Metamorph software version 7.5 and above.
|
| MetamorphReader |
Reader is the file format reader for Metamorph STK files.
|
| MetamorphTiffReader |
MetamorphTiffReader is the file format reader for TIFF files produced by
Metamorph software version 7.5 and above.
|
| MIASReader |
MIASReader is the file format reader for Maia Scientific MIAS-2 datasets.
|
| MicromanagerReader |
MicromanagerReader is the file format reader for Micro-Manager files.
|
| MINCReader |
MINCReader is the file format reader for MINC MRI files.
|
| MinimalTiffReader |
MinimalTiffReader is the superclass for file format readers compatible with
or derived from the TIFF 6.0 file format.
|
| MNGReader |
MNGReader is the file format reader for Multiple-image Network Graphics
(MNG) files.
|
| MolecularImagingReader |
MolecularImagingReader is the file format reader for Molecular Imaging files.
|
| MRCReader |
MRCReader is the file format reader for MRC files.
|
| MRWReader |
MRWReader is the file format reader for Minolta MRW files.
|
| NAFReader |
NAFReader is the file format reader for Hamamatsu Aquacosmos NAF files.
|
| NativeND2Reader |
NativeND2Reader is the file format reader for Nikon ND2 files.
|
| NativeQTReader |
NativeQTReader is the file format reader for QuickTime movie files.
|
| ND2Handler |
DefaultHandler implementation for handling XML produced by Nikon Elements.
|
| ND2Reader |
ND2Reader is the file format reader for Nikon ND2 files.
|
| NDPIReader |
NDPIReader is the file format reader for Hamamatsu .ndpi files.
|
| NDPISReader |
NDPISReader is the file format reader for Hamamatsu .ndpis files.
|
| NiftiReader |
NiftiReader is the file format reader for NIfTI files.
|
| NikonElementsTiffReader |
NikonElementsTiffReader is the file format reader for TIFF files produced
by Nikon Elements.
|
| NikonReader |
NikonReader is the file format reader for Nikon NEF (TIFF) files.
|
| NikonTiffReader |
NikonTiffReader is the file format reader for Nikon TIFF files.
|
| NRRDReader |
File format reader for NRRD files; see http://teem.sourceforge.net/nrrd.
|
| OBFReader |
OBFReader is the file format reader for Imspector OBF files.
|
| OMETiffReader |
OMETiffReader is the file format reader for
OME-TIFF
files.
|
| OMEXMLReader |
OMEXMLReader is the file format reader for OME-XML files.
|
| OpenlabRawReader |
OpenlabRawReader is the file format reader for Openlab RAW files.
|
| OpenlabReader |
OpenlabReader is the file format reader for Openlab LIFF files.
|
| OperettaReader |
OperettaReader is the file format reader for PerkinElmer Operetta data.
|
| OxfordInstrumentsReader |
OxfordInstrumentsReader is the file format reader for
Oxford Instruments .top files.
|
| PCIReader |
PCIReader is the file format reader for SimplePCI (Compix) .cxd files.
|
| PCORAWReader |
PCORAWReader is the file format reader for PCORAW files.
|
| PCXReader |
PCXReader is the file format reader for PCX files (originally used by
PC Paintbrush; now used in Zeiss' LSM Image Browser).
|
| PDSReader |
PDSReader is the file format reader for Perkin Elmer densitometer files.
|
| PerkinElmerReader |
PerkinElmerReader is the file format reader for PerkinElmer files.
|
| PGMReader |
PGMReader is the file format reader for Portable Gray Map (PGM) images.
|
| PhotoshopTiffReader |
PhotoshopTiffReader is the file format reader for
Adobe Photoshop TIFF files.
|
| PictReader |
PictReader is the file format reader for Apple PICT files.
|
| PovrayReader |
PovrayReader is the file format reader for POV-Ray .df3 files.
|
| PQBinReader |
PQBinReader is the file format reader for PicoQuant .bin files.
|
| PrairieMetadata |
Metadata structure for Prairie Technologies' TIFF-based format.
|
| PrairieMetadata.ValueItem |
A leaf value with an actual
PrairieMetadata.ValueItem.value() as well as an optional
PrairieMetadata.ValueItem.description(). |
| PrairieMetadata.ValueTable |
A table of values.
|
| PrairieReader |
PrairieReader is the file format reader for
Prairie Technologies' TIFF variant.
|
| PSDReader |
PSDReader is the file format reader for Photoshop PSD files.
|
| PyramidTiffReader |
PyramidTiffReader is the file format reader for pyramid TIFFs.
|
| QTReader |
QTReader is the file format reader for QuickTime movie files.
|
| QuesantReader |
QuesantReader is the file format reader for Quesant .afm files.
|
| RHKReader |
RHKReader is the file format reader for RHK Technologies files.
|
| SBIGReader |
SBIGReader is the file format reader for SBIG files.
|
| ScanrReader |
ScanrReader is the file format reader for Olympus ScanR datasets.
|
| ScreenReader |
ScreenReader is a generic reader for files in non-HCS formats that have been
organized into a screen.
|
| SDTInfo |
SDTInfo encapsulates the header information for
Becker & Hickl SPC-Image SDT files.
|
| SDTReader |
SDTReader is the file format reader for
Becker & Hickl SPC-Image SDT files.
|
| SeikoReader |
SeikoReader is the file format reader for Seiko .xqd/.xqf files.
|
| SEQReader |
SEQReader is the file format reader for Image-Pro Sequence files.
|
| SIFReader |
SIFReader is the file format reader for Andor SIF files.
|
| SimplePCITiffReader |
SimplePCITiffReader is the file format reader for TIFF files produced by
SimplePCI software.
|
| SISReader |
SISReader is the file format reader for Olympus Soft Imaging Solutions
TIFF files.
|
| SlidebookReader |
SlidebookReader is the file format reader for 3I Slidebook files.
|
| SlidebookTiffReader | |
| SMCameraReader |
SMCameraReader is the file format reader for SM camera files.
|
| SPCReader |
SPCReader is the file format reader for
Becker & Hickl SPC-Image SPC FIFO files.
|
| SPEReader |
SPEReader is the file format reader for Princeton Instruments SPE .spe files.
|
| SpiderReader |
SpiderReader is the file format reader for SPIDER files.
|
| SVSReader |
SVSReader is the file format reader for Aperio SVS TIFF files.
|
| TargaReader |
File format reader for Truevision Targa files.
|
| TCSReader |
TCSReader is the file format reader for Leica TCS TIFF files and their
companion XML file.
|
| TextReader |
Reader for text files containing tables of data.
|
| TiffDelegateReader |
TiffDelegateReader is a file format reader for TIFF files.
|
| TiffJAIReader |
TiffJAIReader is a file format reader for TIFF images.
|
| TiffReader |
TiffReader is the file format reader for regular TIFF files,
not of any specific TIFF variant.
|
| TileJPEGReader |
Reader for decoding JPEG images using java.awt.Toolkit.
|
| TillVisionReader |
TillVisionReader is the file format reader for TillVision files.
|
| TopometrixReader |
TopometrixReader is the file format reader for TopoMetrix .tfr, .ffr,
.zfr, .zfp, and .2fl files.
|
| TrestleReader |
TrestleReader is the file format reader for Trestle slide datasets.
|
| UBMReader |
UBMReader is the file format reader for UBM .pr3 files.
|
| UnisokuReader |
UnisokuReader is the file format reader for Unisoku STM files.
|
| VarianFDFReader |
VarianFDFReader is the file format reader for Varian FDF files.
|
| VeecoReader |
VeecoReader is the file format reader for Veeco HDF files.
|
| VGSAMReader |
VGSAMReader is the file format reader for VG SAM .dti files.
|
| VisitechReader |
VisitechReader is the file format reader for Visitech XYS files.
|
| VolocityClippingReader |
VolocityClippingReader is the file format reader for Volocity library
clipping files.
|
| VolocityReader |
VolocityReader is the file format reader for Volocity library files.
|
| WATOPReader |
WATOPReader is the file format reader for WA Technology .wat files.
|
| WlzReader |
WlzReader is a file format reader for Woolz files.
|
| ZeissCZIReader |
ZeissCZIReader is the file format reader for Zeiss .czi files.
|
| ZeissCZIReader.AttachmentEntry | |
| ZeissCZIReader.Channel | |
| ZeissCZIReader.Coordinate | |
| ZeissCZIReader.DimensionEntry | |
| ZeissLMSReader |
Zeiss LMS reader for data from Zeiss CSM 700 systems.
|
| ZeissLSMReader |
ZeissLSMReader is the file format reader for Zeiss LSM files.
|
| ZeissTIFFHandler |
SAX handler for parsing XML in Zeiss TIFF files.
|
| ZeissTIFFReader |
ZeissTIFFReader is the file format reader for Zeiss AxioVision TIFF
files and their companion XML file.
|
| ZeissZVIReader |
ZeissZVIReader is the file format reader for Zeiss ZVI files.
|
| ZipReader |
Reader for Zip files.
|
| Enum | Description |
|---|---|
| BaseZeissReader.Charset | |
| BaseZeissReader.Context | |
| BaseZeissReader.DrawStyle |
Line drawing styles.
|
| BaseZeissReader.FeatureType |
Feature types.
|
| BaseZeissReader.FillStyle |
Fill styles.
|
| BaseZeissReader.LineEndPositions | |
| BaseZeissReader.LineEndStyle |
Line ending styles.
|
| BaseZeissReader.PointStyle |
Point styles.
|
| BaseZeissReader.TextAlignment | |
| MetadataLevel | |
| SPEReader.SpeHeaderEntry |
SpeHeaderEntry is an Enum which provides a list of all available SPE header entries along
with the offset value from the top of the header in bytes and their associated data type
|
| SPEReader.SpeHeaderType |
SpeHeaderType is an Enum representing the available data types stored in the SPE header
|
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